View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6689_high_3 (Length: 418)
Name: NF6689_high_3
Description: NF6689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6689_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Complemental strand, 27046605 - 27046215
Alignment:
| Q |
18 |
aaatgttactaatgatttgttatagcataaatttatgtgtttgtatccaaacaccgtttatttatttatttatgcttgtgaccatagaagaatgcctcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | |
|
|
| T |
27046605 |
aaatgttactaatgatttgttatagcataaatttatgtgtgtgtatccaaacaccgtttatttatttatttatgcttgtgatcatagaagaatgtctcgt |
27046506 |
T |
|
| Q |
118 |
taatgaatcatataggcacactttcttatatcttcaacttctatannnnnnncctcaaaccactaaaccaacttctcaatccgtttcccaggtagaatag |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27046505 |
taatgaatcatataggctcactttcttatatcttcaacttctatatttttttcctcaaaccactaaaccaacttctcaatccgtttcccaggtagaatag |
27046406 |
T |
|
| Q |
218 |
tgagacatgccggagacggaagacttagagtcgagtttggttttgatggtgcagaatatggtgttccattcttagaagcaactgctaattgcaccctttc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27046405 |
tgagacatgccggagacggaagacttagagtcgagtttggtgttggtggtgcagaatatggtgttccattcttagaagcaactgctaattgcaccctttc |
27046306 |
T |
|
| Q |
318 |
ttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttgatgttccttctcctcaagataaaaattaccctttg |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27046305 |
ttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttgatgttccttctcctcaagataaaaattaccctttg |
27046215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 178 - 408
Target Start/End: Complemental strand, 27086504 - 27086274
Alignment:
| Q |
178 |
cactaaaccaacttctcaatccgtttcccaggtagaatagtgagacatgccggagacggaagacttagagtcgagtttggttttgatggtgcagaatatg |
277 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||| |||||| |||||| || ||||||||||||||||||||||||||| ||| || ||||||||||| |
|
|
| T |
27086504 |
cactaaaccaacttctcactccatttcccaggtagactagtgaaacatgctggtgacggaagacttagagtcgagtttggtgttggtgatgcagaatatg |
27086405 |
T |
|
| Q |
278 |
gtgttccattcttagaagcaactgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttgatgt |
377 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
27086404 |
gtgttccattcttagaagcatatgctaattgcaccctttcttctcttcattacttggacaatactgacacagaaattgcaaaagacttggtgcttgatat |
27086305 |
T |
|
| Q |
378 |
tccttctcctcaagataaaaattaccctttg |
408 |
Q |
| |
|
|||||||||| | ||||||| |||||||||| |
|
|
| T |
27086304 |
tccttctcctaaggataaaagttaccctttg |
27086274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 174 - 408
Target Start/End: Complemental strand, 27042030 - 27041796
Alignment:
| Q |
174 |
aaaccactaaaccaacttctcaatccgtttcccaggtagaatagtgagacatgccggagacggaagacttagagtcgagtttggttttgatggtgcagaa |
273 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||||||||||| |||||| |||||| || || |||||||||||||||||||||||| | | |||||||||| |
|
|
| T |
27042030 |
aaaccactaaaccaacatctcactgcgtttcccaggtagactagtgaaacatgctggtgatggaagacttagagtcgagtttggtctaggtggtgcagaa |
27041931 |
T |
|
| Q |
274 |
tatggtgttccattcttagaagcaactgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttg |
373 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27041930 |
tatggtgttccattcttagaagcatatgctaattgcaccctttcttctcttcattacttggacaatactgacacagaaattgcaaaagacttggtgcttg |
27041831 |
T |
|
| Q |
374 |
atgttccttctcctcaagataaaaattaccctttg |
408 |
Q |
| |
|
|| ||||||||||| | ||||||| |||||||||| |
|
|
| T |
27041830 |
atattccttctcctaaggataaaagttaccctttg |
27041796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 270 - 408
Target Start/End: Complemental strand, 27063283 - 27063145
Alignment:
| Q |
270 |
agaatatggtgttccattcttagaagcaactgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtg |
369 |
Q |
| |
|
||||| ||| ||||| ||||| |||||||||||||| ||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||| | |||||| |
|
|
| T |
27063283 |
agaatttggcgttccgttcttggaagcaactgctaactgcacactttcttctcttcattacctggacaatactaacacagaaattgcaaaacatttggtg |
27063184 |
T |
|
| Q |
370 |
cttgatgttccttctcctcaagataaaaattaccctttg |
408 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27063183 |
cttgatcttccttctcctcaagataaaaattaccctttg |
27063145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 266 - 408
Target Start/End: Complemental strand, 27070360 - 27070218
Alignment:
| Q |
266 |
gtgcagaatatggtgttccattcttagaagcaactgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagactt |
365 |
Q |
| |
|
||||||||| ||| ||||| ||||| |||||||||||||| ||||| |||||||| ||||||||| ||||||||||| |||| || ||||||||| | || |
|
|
| T |
27070360 |
gtgcagaatttggcgttccgttcttggaagcaactgctaactgcacactttcttcccttcattacctggacaatactaacactgaaattgcaaaacattt |
27070261 |
T |
|
| Q |
366 |
ggtgcttgatgttccttctcctcaagataaaaattaccctttg |
408 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||||||||||||||| |
|
|
| T |
27070260 |
ggtgcttgattttcctactcctcaggataaaaattaccctttg |
27070218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 274 - 375
Target Start/End: Complemental strand, 27099065 - 27098964
Alignment:
| Q |
274 |
tatggtgttccattcttagaagcaactgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttg |
373 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| ||||||||||||||| || |||||||||||||||| |||||||| ||||||||| | |||||||||| |
|
|
| T |
27099065 |
tatggtgttccattcttggaagcaattgctaactgcaccctttcttctattaattacttggacaataccgacacagaaattgcaaaacatttggtgcttg |
27098966 |
T |
|
| Q |
374 |
at |
375 |
Q |
| |
|
|| |
|
|
| T |
27098965 |
at |
27098964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 274 - 360
Target Start/End: Complemental strand, 27106064 - 27105978
Alignment:
| Q |
274 |
tatggtgttccattcttagaagcaactgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaa |
360 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| ||||||||||||||| || |||||||||||||||| |||||||| ||||||||| |
|
|
| T |
27106064 |
tatggtgttccattcttggaagcaagtgctaactgcaccctttcttctattaattacttggacaataccgacacagaaattgcaaaa |
27105978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 27086555 - 27086522
Alignment:
| Q |
16 |
caaaatgttactaatgatttgttatagcataaat |
49 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
27086555 |
caaaatgttactaatgaattgttatagcataaat |
27086522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 395
Target Start/End: Complemental strand, 19415089 - 19414961
Alignment:
| Q |
267 |
tgcagaatatggtgttccattcttagaagcaactgctaattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttg |
366 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||||||||| |||| |||| ||||||| |||||||||||||| | |||||||| | |||||| | ||| |
|
|
| T |
19415089 |
tgcagaatttggagttccattcttggaagcaactgctaactgcagccttgattctcttaattacttggacaatgcagacacagaagtggcaaaacaattg |
19414990 |
T |
|
| Q |
367 |
gtgcttgatgttccttctcctcaagataa |
395 |
Q |
| |
|
||| ||||| |||||| ||||||||||| |
|
|
| T |
19414989 |
gtgtttgatcctccttcccctcaagataa |
19414961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University