View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6689_low_1 (Length: 455)

Name: NF6689_low_1
Description: NF6689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6689_low_1
NF6689_low_1
[»] chr4 (20 HSPs)
chr4 (19-244)||(30681153-30681378)
chr4 (396-446)||(14261279-14261329)
chr4 (402-446)||(25704886-25704930)
chr4 (402-446)||(44569072-44569116)
chr4 (403-446)||(21310656-21310699)
chr4 (403-446)||(24706246-24706289)
chr4 (404-446)||(12071795-12071837)
chr4 (406-446)||(21661537-21661577)
chr4 (406-446)||(21670301-21670341)
chr4 (402-446)||(22321266-22321310)
chr4 (411-446)||(40122494-40122529)
chr4 (396-442)||(19362192-19362238)
chr4 (401-446)||(20249011-20249056)
chr4 (405-446)||(21064996-21065037)
chr4 (403-440)||(34324617-34324654)
chr4 (402-439)||(39295418-39295455)
chr4 (414-446)||(50768097-50768129)
chr4 (404-446)||(19692957-19692999)
chr4 (404-446)||(19703542-19703584)
chr4 (402-442)||(24706486-24706526)
[»] chr6 (12 HSPs)
chr6 (397-446)||(8626717-8626766)
chr6 (397-446)||(13757442-13757491)
chr6 (402-446)||(1605813-1605857)
chr6 (396-446)||(4129661-4129711)
chr6 (404-446)||(7761535-7761577)
chr6 (404-446)||(29260427-29260469)
chr6 (402-446)||(15064693-15064737)
chr6 (403-446)||(8235860-8235903)
chr6 (403-446)||(17942678-17942721)
chr6 (404-446)||(31559738-31559780)
chr6 (397-430)||(1814588-1814621)
chr6 (402-442)||(15064933-15064973)
[»] chr8 (12 HSPs)
chr8 (400-446)||(3585686-3585732)
chr8 (401-446)||(43275396-43275441)
chr8 (402-446)||(11646323-11646367)
chr8 (402-446)||(30999522-30999566)
chr8 (403-446)||(36068315-36068358)
chr8 (404-446)||(7147148-7147190)
chr8 (404-446)||(37345806-37345848)
chr8 (404-446)||(40058303-40058345)
chr8 (404-446)||(40918731-40918773)
chr8 (401-446)||(2539927-2539972)
chr8 (402-446)||(11174221-11174265)
chr8 (403-446)||(35866848-35866891)
[»] chr1 (12 HSPs)
chr1 (400-446)||(284568-284614)
chr1 (401-446)||(24771903-24771948)
chr1 (402-446)||(40783655-40783699)
chr1 (404-446)||(23045279-23045321)
chr1 (401-446)||(33082979-33083024)
chr1 (404-444)||(321863-321903)
chr1 (403-446)||(23526474-23526517)
chr1 (403-446)||(51064753-51064796)
chr1 (404-446)||(47037852-47037894)
chr1 (397-442)||(3943766-3943811)
chr1 (401-442)||(41959812-41959853)
chr1 (400-436)||(40562282-40562318)
[»] chr2 (9 HSPs)
chr2 (401-446)||(23367024-23367069)
chr2 (403-446)||(22388137-22388180)
chr2 (399-446)||(39938405-39938452)
chr2 (401-446)||(1102736-1102781)
chr2 (404-445)||(37673743-37673784)
chr2 (402-446)||(3519142-3519186)
chr2 (398-446)||(12969734-12969782)
chr2 (404-446)||(1646522-1646564)
chr2 (404-446)||(40756911-40756953)
[»] chr5 (10 HSPs)
chr5 (398-446)||(11319791-11319839)
chr5 (402-446)||(12806851-12806895)
chr5 (403-446)||(30720491-30720534)
chr5 (404-446)||(36561099-36561141)
chr5 (404-446)||(40886610-40886652)
chr5 (403-446)||(23097723-23097766)
chr5 (404-446)||(25683229-25683271)
chr5 (411-445)||(25773885-25773919)
chr5 (403-446)||(10285057-10285100)
chr5 (402-446)||(37900621-37900665)
[»] chr3 (11 HSPs)
chr3 (386-446)||(46694092-46694152)
chr3 (403-446)||(19241667-19241710)
chr3 (403-446)||(29375367-29375410)
chr3 (403-446)||(36881515-36881558)
chr3 (404-446)||(13365078-13365120)
chr3 (396-434)||(13703459-13703497)
chr3 (404-446)||(32834989-32835031)
chr3 (398-446)||(3383311-3383359)
chr3 (402-442)||(19912177-19912217)
chr3 (402-442)||(38806344-38806384)
chr3 (402-446)||(48820575-48820619)
[»] chr7 (6 HSPs)
chr7 (403-446)||(27814046-27814089)
chr7 (403-446)||(40349196-40349239)
chr7 (402-446)||(36453122-36453166)
chr7 (403-446)||(25614352-25614395)
chr7 (402-446)||(47110685-47110729)
chr7 (404-446)||(10981743-10981785)
[»] scaffold1770 (1 HSPs)
scaffold1770 (396-446)||(396-446)
[»] scaffold0054 (1 HSPs)
scaffold0054 (404-446)||(45688-45730)
[»] scaffold0257 (1 HSPs)
scaffold0257 (404-442)||(23875-23913)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 30681378 - 30681153
Alignment:
Q  19 tgtctcaacgtaccgtgtttcaaatgttgacgtcgaacactaatgttatctcgtgttcttttcctattcttcattgaagcttgaaagttatggatgttat 118  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30681378 tgtctcaaggtaccgtggttcaaatgttgacgtcgaacactaatgttatctcgtgttcttttcctattcttcattgaagcttgaaagctatggatgttat 30681279  T
Q  119 ttttgtgctcgatctacctaagagtaaaccgctcaatctggttatggggttctcgtcatacgatgtgtttcctctatgacacattaacgcatcccgatgt 218  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||    
T  30681278 ttttgtgctcgatctacctgagagtaaactgctcaatctagttatggggttctcttcatacgatgtgtttcctctatgacacatcaacacatcccgatgt 30681179  T
Q  219 caaagattttgaacacggtaatgatg 244  Q
    ||||||||||||||||||| ||||||    
T  30681178 caaagattttgaacacggtgatgatg 30681153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 446
Target Start/End: Complemental strand, 14261329 - 14261279
Alignment:
Q  396 ttatttaatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  14261329 ttatttcatactccctccgtttcataatacttgtccattttagagaataat 14261279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 25704930 - 25704886
Alignment:
Q  402 aatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  25704930 aatactccctccgtttcataatacttgtccattttagagaataat 25704886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 44569116 - 44569072
Alignment:
Q  402 aatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  44569116 aatactccctccgtttcataatacttgtccattttagagaataat 44569072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 21310699 - 21310656
Alignment:
Q  403 atactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  21310699 atactccctccgtttcataatacttgtccattttagagaataat 21310656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 24706246 - 24706289
Alignment:
Q  403 atactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  24706246 atactccctccgtttcataatacttgtccattttagagaataat 24706289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 12071837 - 12071795
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  12071837 tactccctccgtttcataatacttgtccattttagagaataat 12071795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 446
Target Start/End: Original strand, 21661537 - 21661577
Alignment:
Q  406 ctccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  21661537 ctccctccgtttcataatacttgtccattttagagaataat 21661577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 446
Target Start/End: Original strand, 21670301 - 21670341
Alignment:
Q  406 ctccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  21670301 ctccctccgtttcataatacttgtccattttagagaataat 21670341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 22321266 - 22321310
Alignment:
Q  402 aatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||||| |||||||||||||||||||| |||||||||||||||    
T  22321266 aatactccctccgtttcataatacttgtctattttagagaataat 22321310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 411 - 446
Target Start/End: Original strand, 40122494 - 40122529
Alignment:
Q  411 tccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||||||||||||||||||||||||||||||||    
T  40122494 tccgtttcataatacttgtccattttagagaataat 40122529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 442
Target Start/End: Complemental strand, 19362238 - 19362192
Alignment:
Q  396 ttatttaatactccatccgtttcataatacttgtccattttagagaa 442  Q
    |||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  19362238 ttatttaatacttcatccgtttcaaaatacatgtccattttagagaa 19362192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 446
Target Start/End: Original strand, 20249011 - 20249056
Alignment:
Q  401 taatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||||  |||||||||||||||||||||||||| |||||||||    
T  20249011 taatactcactccgtttcataatacttgtccattttggagaataat 20249056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 446
Target Start/End: Complemental strand, 21065037 - 21064996
Alignment:
Q  405 actccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||| ||||||||||||||||||| ||||||||||||||||    
T  21065037 actccctccgtttcataatacttgttcattttagagaataat 21064996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 440
Target Start/End: Original strand, 34324617 - 34324654
Alignment:
Q  403 atactccatccgtttcataatacttgtccattttagag 440  Q
    |||||||||| |||||||||||||||||||||||||||    
T  34324617 atactccatctgtttcataatacttgtccattttagag 34324654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 439
Target Start/End: Complemental strand, 39295455 - 39295418
Alignment:
Q  402 aatactccatccgtttcataatacttgtccattttaga 439  Q
    |||||||| |||||||||||||||||||||||||||||    
T  39295455 aatactccttccgtttcataatacttgtccattttaga 39295418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 446
Target Start/End: Complemental strand, 50768129 - 50768097
Alignment:
Q  414 gtttcataatacttgtccattttagagaataat 446  Q
    |||||||||||||||||||||||||||||||||    
T  50768129 gtttcataatacttgtccattttagagaataat 50768097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 19692999 - 19692957
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||||||||| ||| |||||||||| |||||||||||||||    
T  19692999 tactccatccgtatcacaatacttgtctattttagagaataat 19692957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 19703584 - 19703542
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||||||||| ||| |||||||||| |||||||||||||||    
T  19703584 tactccatccgtatcacaatacttgtctattttagagaataat 19703542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 442
Target Start/End: Complemental strand, 24706526 - 24706486
Alignment:
Q  402 aatactccatccgtttcataatacttgtccattttagagaa 442  Q
    |||||||||||||||||| ||||| |||||||||| |||||    
T  24706526 aatactccatccgtttcaaaatacatgtccattttggagaa 24706486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 397 - 446
Target Start/End: Complemental strand, 8626766 - 8626717
Alignment:
Q  397 tatttaatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8626766 tatttaatactccctccgtttcataatacttgtccattttagagaataat 8626717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 397 - 446
Target Start/End: Complemental strand, 13757491 - 13757442
Alignment:
Q  397 tatttaatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13757491 tatttgatactccatccgtttcataatacttgtccattttagagaataat 13757442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 1605857 - 1605813
Alignment:
Q  402 aatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  1605857 aatactccctccgtttcataatacttgtccattttagagaataat 1605813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 396 - 446
Target Start/End: Complemental strand, 4129711 - 4129661
Alignment:
Q  396 ttatttaatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||| |||||| ||||||||||||||||||||||||||||| ||||||    
T  4129711 ttatttattactccctccgtttcataatacttgtccattttagaaaataat 4129661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 7761577 - 7761535
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  7761577 tactccctccgtttcataatacttgtccattttagagaataat 7761535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 29260469 - 29260427
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  29260469 tactccctccgtttcataatacttgtccattttagagaataat 29260427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 15064693 - 15064737
Alignment:
Q  402 aatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||||| |||||||||||||||||||||||||| |||||||||    
T  15064693 aatactccctccgtttcataatacttgtccattttggagaataat 15064737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 8235903 - 8235860
Alignment:
Q  403 atactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||| |||||||||||||||||||||| |||||||||||||||    
T  8235903 atacttcatccgtttcataatacttgtctattttagagaataat 8235860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 17942721 - 17942678
Alignment:
Q  403 atactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||| |||||||||||||||||||||||||| |||||||||    
T  17942721 atactccctccgtttcataatacttgtccattttggagaataat 17942678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 31559738 - 31559780
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| ||||||||||||||||| ||||||||||||||||||    
T  31559738 tactccctccgtttcataatacttctccattttagagaataat 31559780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 430
Target Start/End: Original strand, 1814588 - 1814621
Alignment:
Q  397 tatttaatactccatccgtttcataatacttgtc 430  Q
    ||||||||||||||||||||||| ||||||||||    
T  1814588 tatttaatactccatccgtttcacaatacttgtc 1814621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 442
Target Start/End: Complemental strand, 15064973 - 15064933
Alignment:
Q  402 aatactccatccgtttcataatacttgtccattttagagaa 442  Q
    |||||||| ||||||||| ||||| ||||||||||||||||    
T  15064973 aatactccctccgtttcaaaatacatgtccattttagagaa 15064933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 3585732 - 3585686
Alignment:
Q  400 ttaatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  3585732 ttaatactccatccgtttcataatacttgtctattttagagaataat 3585686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 446
Target Start/End: Original strand, 43275396 - 43275441
Alignment:
Q  401 taatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  43275396 taatactccctccgtttcataatacttgtccattttagagaataat 43275441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 11646323 - 11646367
Alignment:
Q  402 aatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  11646323 aatactccctccgtttcataatacttgtccattttagagaataat 11646367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 30999522 - 30999566
Alignment:
Q  402 aatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  30999522 aatactccctccgtttcataatacttgtccattttagagaataat 30999566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 36068358 - 36068315
Alignment:
Q  403 atactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  36068358 atactccctccgtttcataatacttgtccattttagagaataat 36068315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 7147190 - 7147148
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  7147190 tactccctccgtttcataatacttgtccattttagagaataat 7147148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 37345848 - 37345806
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  37345848 tactccttccgtttcataatacttgtccattttagagaataat 37345806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 40058303 - 40058345
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  40058303 tactccctccgtttcataatacttgtccattttagagaataat 40058345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 40918731 - 40918773
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  40918731 tactccctccgtttcataatacttgtccattttagagaataat 40918773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 401 - 446
Target Start/End: Original strand, 2539927 - 2539972
Alignment:
Q  401 taatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  2539927 taatactccttccgtttcataatacttgtccattttaaagaataat 2539972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 11174221 - 11174265
Alignment:
Q  402 aatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||||| ||||||||||||||||||| ||||||| ||||||||    
T  11174221 aatactccctccgtttcataatacttgttcattttaaagaataat 11174265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 35866891 - 35866848
Alignment:
Q  403 atactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||||||||||||| |||||||||| ||||| |||||||||    
T  35866891 atactccatccgtttcacaatacttgtctattttggagaataat 35866848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 284614 - 284568
Alignment:
Q  400 ttaatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  284614 ttaatactccctccgtttcataatacttgtccattttagagaataat 284568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 446
Target Start/End: Original strand, 24771903 - 24771948
Alignment:
Q  401 taatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  24771903 taatactccctccgtttcataatacttgtccattttagagaataat 24771948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 40783655 - 40783699
Alignment:
Q  402 aatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  40783655 aatactccctccgtttcataatacttgtccattttagagaataat 40783699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 23045279 - 23045321
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  23045279 tactccctccgtttcataatacttgtccattttagagaataat 23045321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 401 - 446
Target Start/End: Complemental strand, 33083024 - 33082979
Alignment:
Q  401 taatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  33083024 taatactccctccgtttcataatacttgtccattttaaagaataat 33082979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 444
Target Start/End: Complemental strand, 321903 - 321863
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaata 444  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  321903 tactccctccgtttcataatacttgtccattttagagaata 321863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 23526517 - 23526474
Alignment:
Q  403 atactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||    
T  23526517 atactccctccgtttcataatacttgtccattttgaagaataat 23526474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 51064753 - 51064796
Alignment:
Q  403 atactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||| || |||||| ||||||||||||||||||||||||||    
T  51064753 atactccgtctgtttcacaatacttgtccattttagagaataat 51064796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 47037852 - 47037894
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| |||||||||||||||||||| |||||| ||||||||    
T  47037852 tactccctccgtttcataatacttgtctattttaaagaataat 47037894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 442
Target Start/End: Complemental strand, 3943811 - 3943766
Alignment:
Q  397 tatttaatactccatccgtttcataatacttgtccattttagagaa 442  Q
    |||||| |||||| ||||||||| ||||| ||||||||||||||||    
T  3943811 tatttagtactccctccgtttcaaaatacatgtccattttagagaa 3943766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 442
Target Start/End: Complemental strand, 41959853 - 41959812
Alignment:
Q  401 taatactccatccgtttcataatacttgtccattttagagaa 442  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||    
T  41959853 taatactccctccgtttcaaaatacatgtccattttagagaa 41959812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 436
Target Start/End: Original strand, 40562282 - 40562318
Alignment:
Q  400 ttaatactccatccgtttcataatacttgtccatttt 436  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  40562282 ttaatacttcatccgttttataatacttgtccatttt 40562318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 446
Target Start/End: Complemental strand, 23367069 - 23367024
Alignment:
Q  401 taatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  23367069 taatactccctccgtttcataatacttgtccattttagagaataat 23367024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 22388137 - 22388180
Alignment:
Q  403 atactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  22388137 atactccctccgtttcataatacttgtccattttagagaataat 22388180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 446
Target Start/End: Complemental strand, 39938452 - 39938405
Alignment:
Q  399 tttaatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  39938452 tttaatactccctccgttttataatacttgtccattttagagaataat 39938405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 401 - 446
Target Start/End: Complemental strand, 1102781 - 1102736
Alignment:
Q  401 taatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||    
T  1102781 taatactccctccgtttcataatacttgtccatttgagagaataat 1102736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 445
Target Start/End: Original strand, 37673743 - 37673784
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataa 445  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  37673743 tactccttccgtttcataatacttgtccattttagagaataa 37673784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 3519186 - 3519142
Alignment:
Q  402 aatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| | ||||||||||||||||||||||||||||||||||||    
T  3519186 aatacttcctccgtttcataatacttgtccattttagagaataat 3519142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 446
Target Start/End: Original strand, 12969734 - 12969782
Alignment:
Q  398 atttaatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||| |||||| |||||||||||||||||||||||||| |||||||||    
T  12969734 atttattactccctccgtttcataatacttgtccattttggagaataat 12969782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 1646564 - 1646522
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| ||||||||||||||| ||||||||||||||||||||    
T  1646564 tactccctccgtttcataatacctgtccattttagagaataat 1646522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 40756911 - 40756953
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| |||||||||||||||||||||||||| |||||||||    
T  40756911 tactccctccgtttcataatacttgtccattttggagaataat 40756953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 398 - 446
Target Start/End: Complemental strand, 11319839 - 11319791
Alignment:
Q  398 atttaatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||    
T  11319839 atttaatacttcatccgtttcataatacttgtctattttagagaataat 11319791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 12806851 - 12806895
Alignment:
Q  402 aatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  12806851 aatactccctccgtttcataatacttgtccattttagagaataat 12806895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 30720491 - 30720534
Alignment:
Q  403 atactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  30720491 atactccctccgtttcataatacttgtccattttagagaataat 30720534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 36561099 - 36561141
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  36561099 tactccctccgtttcataatacttgtccattttagagaataat 36561141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 40886610 - 40886652
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  40886610 tactccctccgtttcataatacttgtccattttagagaataat 40886652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 23097723 - 23097766
Alignment:
Q  403 atactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||| |||||||||||||||||||||||||| |||||||||    
T  23097723 atactccttccgtttcataatacttgtccattttggagaataat 23097766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 25683229 - 25683271
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| |||||||||||||||||||||||||| |||||||||    
T  25683229 tactccctccgtttcataatacttgtccattttggagaataat 25683271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 445
Target Start/End: Complemental strand, 25773919 - 25773885
Alignment:
Q  411 tccgtttcataatacttgtccattttagagaataa 445  Q
    |||||||||||||||||||||||||||||||||||    
T  25773919 tccgtttcataatacttgtccattttagagaataa 25773885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 10285057 - 10285100
Alignment:
Q  403 atactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||    
T  10285057 atactccctccgtttcataatacttgtctattttaaagaataat 10285100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 37900621 - 37900665
Alignment:
Q  402 aatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||||| |||||||||||||||||||| |||||  ||||||||    
T  37900621 aatactccttccgtttcataatacttgtctattttgaagaataat 37900665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 386 - 446
Target Start/End: Original strand, 46694092 - 46694152
Alignment:
Q  386 taattaactcttatttaatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||| |||||| | ||| |||||| ||||||||||||||||||||||||||||||||||||    
T  46694092 taatgaactctaagttactactccctccgtttcataatacttgtccattttagagaataat 46694152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 19241667 - 19241710
Alignment:
Q  403 atactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  19241667 atactccctccgtttcataatacttgtccattttagagaataat 19241710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 29375410 - 29375367
Alignment:
Q  403 atactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  29375410 atactccctccgtttcataatacttgtccattttagagaataat 29375367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 36881558 - 36881515
Alignment:
Q  403 atactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  36881558 atactccctccgtttcataatacttgtccattttagagaataat 36881515  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 13365120 - 13365078
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  13365120 tactccctccgtttcataatacttgtccattttagagaataat 13365078  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 434
Target Start/End: Complemental strand, 13703497 - 13703459
Alignment:
Q  396 ttatttaatactccatccgtttcataatacttgtccatt 434  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  13703497 ttattttatactccatccgtttcataatacttgtccatt 13703459  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 32834989 - 32835031
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| |||||||||||||||||||||||| |||||||||||    
T  32834989 tactccctccgtttcataatacttgtccattgtagagaataat 32835031  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 446
Target Start/End: Complemental strand, 3383359 - 3383311
Alignment:
Q  398 atttaatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||| |||||| | ||||| ||||||||||||||||||||||||||||    
T  3383359 atttattactcctttcgttttataatacttgtccattttagagaataat 3383311  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 442
Target Start/End: Complemental strand, 19912217 - 19912177
Alignment:
Q  402 aatactccatccgtttcataatacttgtccattttagagaa 442  Q
    |||||||| ||||||||| ||||| ||||||||||||||||    
T  19912217 aatactccctccgtttcaaaatacatgtccattttagagaa 19912177  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 442
Target Start/End: Complemental strand, 38806384 - 38806344
Alignment:
Q  402 aatactccatccgtttcataatacttgtccattttagagaa 442  Q
    |||||||| ||||||||| ||||| ||||||||||||||||    
T  38806384 aatactccctccgtttcaaaatacatgtccattttagagaa 38806344  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 48820619 - 48820575
Alignment:
Q  402 aatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| | ||||||||||||||||||||||||||| | ||||||    
T  48820619 aatacttcctccgtttcataatacttgtccattttaaaaaataat 48820575  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 27814089 - 27814046
Alignment:
Q  403 atactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  27814089 atactccctccgtttcataatacttgtccattttagagaataat 27814046  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 40349239 - 40349196
Alignment:
Q  403 atactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  40349239 atactccctccgtttcataatacttgtccattttagagaataat 40349196  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 36453122 - 36453166
Alignment:
Q  402 aatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||||  ||||||||||||||||||||||||||||||||||||    
T  36453122 aatactctctccgtttcataatacttgtccattttagagaataat 36453166  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 25614352 - 25614395
Alignment:
Q  403 atactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||| |||||||||||||| |||||||||||||||||||||    
T  25614352 atactccctccgtttcataataattgtccattttagagaataat 25614395  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 47110729 - 47110685
Alignment:
Q  402 aatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||||| ||||||||||||||||| | ||||||||||||||||    
T  47110729 aatactccctccgtttcataatacttattcattttagagaataat 47110685  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 10981785 - 10981743
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| ||| |||||||||| |||||||||||||||||||||    
T  10981785 tactccctccatttcataatatttgtccattttagagaataat 10981743  T

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Target: scaffold1770 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 396 - 446
Target Start/End: Complemental strand, 446 - 396
Alignment:
Q  396 ttatttaatactccatccgtttcataatacttgtccattttagagaataat 446  Q
    ||||||| |||||| ||||||||||||||||||||||||||||| ||||||    
T  446 ttatttattactccctccgtttcataatacttgtccattttagaaaataat 396  T

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Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 45730 - 45688
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaataat 446  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  45730 tactccctccgtttcataatacttgtccattttagagaataat 45688  T

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Target: scaffold0257 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 442
Target Start/End: Complemental strand, 23913 - 23875
Alignment:
Q  404 tactccatccgtttcataatacttgtccattttagagaa 442  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  23913 tactccatccgtttcaaaatacatgtccattttagagaa 23875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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