View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6689_low_5 (Length: 321)
Name: NF6689_low_5
Description: NF6689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6689_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 314
Target Start/End: Complemental strand, 27045663 - 27045359
Alignment:
| Q |
10 |
caatgaaatgccactctatgaaattgttaagttgatcaaagagtctaaaaagattgcttcctccactgattatgtcaaaaactcgatcgatcacactccg |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27045663 |
caatgaaatgccactctatgaaattgttaagttgatcaaagaggctaaaaagattgcttcctccactgattatgtcaaaaactcgatcgatcacactccg |
27045564 |
T |
|
| Q |
110 |
aagacggagcataagcaagattttagcatggacggtagcggtgcggtaacgattctgactgagtggaagcatttaggttttgttgatgaaaatagtatag |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27045563 |
gagacggagcataagcaagattttagcatggacggtagcggtgcggtaacgattctgactgagtggaagcatttaggttttgttgatgaaaataatatag |
27045464 |
T |
|
| Q |
210 |
attttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgcgtctttagaagggtgcattttcgcatctcctggtaaacttgatga |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27045463 |
attttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgcgtctttggaagggtgcattttcgcatctcctggtaaacttgatga |
27045364 |
T |
|
| Q |
310 |
tgatg |
314 |
Q |
| |
|
||||| |
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| T |
27045363 |
tgatg |
27045359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 267
Target Start/End: Complemental strand, 27105258 - 27105142
Alignment:
| Q |
148 |
cggtgcggtaacgattctgactgagtggaagcatttaggttttgttgatgaaaatagtatagattttggagggtatgaatcagtgaattttgtaccagca |
247 |
Q |
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|||||| |||||| ||||||| |||||||| |||||||||||| |||||| |||| |||||||||| ||| ||||| |||||||||| ||||||||| |
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| T |
27105258 |
cggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggaaatg---tagattttggtgggcatgaagcagtgaatttagtaccagca |
27105162 |
T |
|
| Q |
248 |
ccatgcaacatgtttgcgtc |
267 |
Q |
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||||||||| |||||||||| |
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| T |
27105161 |
ccatgcaacttgtttgcgtc |
27105142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 149 - 267
Target Start/End: Complemental strand, 27098258 - 27098143
Alignment:
| Q |
149 |
ggtgcggtaacgattctgactgagtggaagcatttaggttttgttgatgaaaatagtatagattttggagggtatgaatcagtgaattttgtaccagcac |
248 |
Q |
| |
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||||| |||||| ||||||| |||||||| |||||||||||| |||||| |||| |||||||||| ||| | ||| |||||||||| |||||||||| |
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| T |
27098258 |
ggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggaaatg---tagattttggtgggaacgaagcagtgaatttagtaccagcac |
27098162 |
T |
|
| Q |
249 |
catgcaacatgtttgcgtc |
267 |
Q |
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||||||||||||||||||| |
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| T |
27098161 |
catgcaacatgtttgcgtc |
27098143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 27069670 - 27069598
Alignment:
| Q |
12 |
atgaaatgccactctatgaaattgttaagttgatcaaagagtctaaaaagattgcttcctccactgattatgt |
84 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||| ||||||| ||| ||| | ||||||||||||| |
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| T |
27069670 |
atgaaatgccactctatgaaattgttaagctgattaaagagactaaaaatatttctttcaccactgattatgt |
27069598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 27098392 - 27098314
Alignment:
| Q |
12 |
atgaaatgccactctatgaaattgttaagttgatcaaagagtctaaaaagattgcttcctccactgattatgtcaaaaa |
90 |
Q |
| |
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|||||| |||||||||||||||| ||||| | |||| |||| ||||||| ||||||||| ||||||||| ||||||||| |
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| T |
27098392 |
atgaaaggccactctatgaaattattaagctcatcagagagactaaaaacattgcttccaccactgattttgtcaaaaa |
27098314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 27056559 - 27056480
Alignment:
| Q |
14 |
gaaatgccactctatgaaattgttaagttgatcaaagagtctaaaaagattgcttcctccactgattatgtcaaaaactc |
93 |
Q |
| |
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||||||||||||||||||||||||||| |||| |||||| ||||||| ||||||| | |||||||||||| |||||| |
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| T |
27056559 |
gaaatgccactctatgaaattgttaagctgattaaagagactaaaaatattgctttcattgctgattatgtcacaaactc |
27056480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 264
Target Start/End: Complemental strand, 27062411 - 27062354
Alignment:
| Q |
207 |
tagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgc |
264 |
Q |
| |
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||||||||||||| ||||||| |||||||||| |||| ||||||||||| ||| |||| |
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| T |
27062411 |
tagattttggaggttatgaattagtgaattttctacctgcaccatgcaagatgcttgc |
27062354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 27062603 - 27062522
Alignment:
| Q |
12 |
atgaaatgccactctatgaaattgttaagttgatcaaagagtctaaaaagattgcttcctccactgattatgtcaaaaactc |
93 |
Q |
| |
|
||||||||||||||||| |||| |||||| |||| |||||| ||||||| ||||||| | | |||||||||| | |||||| |
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| T |
27062603 |
atgaaatgccactctataaaatcgttaagctgattaaagagactaaaaatattgctttcactgctgattatgtaagaaactc |
27062522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 27105391 - 27105313
Alignment:
| Q |
12 |
atgaaatgccactctatgaaattgttaagttgatcaaagagtctaaaaagattgcttcctccactgattatgtcaaaaa |
90 |
Q |
| |
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|||||| |||||||||||||||| |||| | || | |||| ||||||| ||||||||| ||||||||| | ||||||| |
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| T |
27105391 |
atgaaaggccactctatgaaattattaacctaataagagagactaaaaacattgcttccaccactgattttatcaaaaa |
27105313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 19414212 - 19414159
Alignment:
| Q |
209 |
gattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgttt |
262 |
Q |
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||||||||||| | |||| |||| ||||||||| ||||||||||||||||||| |
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| T |
19414212 |
gattttggaggatttgaagcagttaattttgtaatagcaccatgcaacatgttt |
19414159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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