View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_high_12 (Length: 320)
Name: NF6690_high_12
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_high_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 38184291 - 38183968
Alignment:
| Q |
1 |
tgatgatgttcttgctcaggcctttcagattgatgctaaacaggttgatgaaataaagacaaaggttgctcctaagaagacttaatttataatgttcaag |
100 |
Q |
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| T |
38184291 |
tgatgatgttcttgctcaggcctttcagattgatgctaaacaggttgatgaaataaagacaaaggttgctcctaagaagacttaatttataatgttcaag |
38184192 |
T |
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| Q |
101 |
aggggaaaaaagttcagtgttttgactgttttcaatcatttttactttctatttttgaaaataattcttgaagggttatgatgattattgtatttgtacc |
200 |
Q |
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| T |
38184191 |
aggggaaaaaagttcagtgttttgactgttttcaatcatttttactttctatttttgaaaataattcttgaagggttatgatgattattgtatttgtacc |
38184092 |
T |
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| Q |
201 |
atttattatggtgttacatatagtaagtgcg--------tgttgatgatat---taataataatgcaaattctatgaactatgaagtaggtagaatgtgt |
289 |
Q |
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| T |
38184091 |
atttattatggtgttacatatagtaagtacgtgttgaactgttgatgatattaataataataatgcaaatt-------ctatgaagtagctagaatgtgt |
38183999 |
T |
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| Q |
290 |
cacattttatgtgggatatattgtttctttc |
320 |
Q |
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| T |
38183998 |
cacattttatgtgggatatattgtttctttc |
38183968 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 49011404 - 49011331
Alignment:
| Q |
230 |
cgtgttgatgatattaataataatgcaaattctatgaactatgaagtaggtagaatgtgtcacattttatgtgggatatat |
310 |
Q |
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| T |
49011404 |
cgtgttgatgatattaataataatgcaaattcta-------tgaagtagctagaatatgtcaaattttatgtgggatatat |
49011331 |
T |
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