View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6690_high_23 (Length: 242)
Name: NF6690_high_23
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_high_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 18887625 - 18887832
Alignment:
| Q |
17 |
catttaccaatgaattatataagtcataaagtttccctgatgaggtggatcatgttattccatcgcagcaaaatgtgnnnnnnn--atgcgtgttcatct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| ||||| |
|
|
| T |
18887625 |
catttaccaatgaattatataagtcataaaatttccctgatgaggtggatcatgttattccatcgcaacaaaatgtgtttttttttatgtgtgtacatct |
18887724 |
T |
|
| Q |
115 |
tgctaatttaaatcttagtcccatatgnnnnnnnnatgaggtggacattattgaagctgagggtttgcaatcgataaacattacaaaagtttggattgcg |
214 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18887725 |
tgctaatttaaatcttggtcccatatgttttttt-atgaggtggacattattgaagctgagggtttgcaatcgatagacattacaaaagtttggattgcg |
18887823 |
T |
|
| Q |
215 |
aaaatgcat |
223 |
Q |
| |
|
||||||||| |
|
|
| T |
18887824 |
aaaatgcat |
18887832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 12806107 - 12806051
Alignment:
| Q |
17 |
catttaccaatgaattatata--agtcataaagtttccctgatgaggtggatcatgt |
71 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||| || |||||||||||||||| |
|
|
| T |
12806107 |
catttaacaatgaattatatataagtcataaagtttctctaatgaggtggatcatgt |
12806051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 6941522 - 6941598
Alignment:
| Q |
17 |
catttaccaatgaattatataagtcataaagtttccctgatgaggtggatcatgttattccatcgcagcaaaatgtg |
93 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| || |||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
6941522 |
catttaacaatgaattatataaagcataaagtttctctaatgaggtggatcatgtcattccatcatagcaaaatgtg |
6941598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University