View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_high_4 (Length: 524)
Name: NF6690_high_4
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Complemental strand, 35243578 - 35243145
Alignment:
| Q |
19 |
aaagagaagcttcactatgtgttcaagatcaatcaaactttagaaatgaagccaattaccattggccttatttgccctaaacccctctggttttttctca |
118 |
Q |
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| T |
35243578 |
aaagagaagcttcactatgtgttcaagatcaatcaaactttagaaatgaagccaattatcattggccttatttgccctaaacccctctggttttttctca |
35243479 |
T |
|
| Q |
119 |
caaaataacatgcacaacaaccccttgcaagcacatatatattggcaagcaacccataaagcaacatataaattttattataacagtgtaactgtcaggt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35243478 |
caaaataacatgcacaacaaccccttgcaagcacatatatattggcaagcaacccataaagcaacatataaattttattataacagtgtaactgtcaggt |
35243379 |
T |
|
| Q |
219 |
cacagaagtagtatgtgaattgattaaaacataactagaaaaacccctgcacccctgaatcgatgcaatattttgaatatgaattgatatgaatttcttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35243378 |
cacagaagtagtatgtgaattgattaaaacataactagaaaaacccctgcacccctgaatcgatgcaatattttgaatatgaattgatatgaatttcttt |
35243279 |
T |
|
| Q |
319 |
aaattcagacacatctctgataaaatggacggagacatgtactgtttcagcttacatcatgcagcaaaaggcgacagcaattcaaaattatatcatatcc |
418 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35243278 |
aaattcagacacatctctgataaaatgaacggagtcatgtactgtttcagcttacatcatgcagcaaaaggcgacagcaattcaaaattatatcatatcc |
35243179 |
T |
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| Q |
419 |
caaaatttggattgaatatgtggcttaaggtata |
452 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
35243178 |
caaaatttagattgaatatgtggcttaaggtata |
35243145 |
T |
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