View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_low_1 (Length: 605)
Name: NF6690_low_1
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_low_1 |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 18 - 598
Target Start/End: Complemental strand, 38235565 - 38234985
Alignment:
| Q |
18 |
aacttcatcttctcttgttcccggcacggtggcggcggtagtggtggtggagtagctgtagctgtaactctcacctacactgcatgtttctgaaatgaca |
117 |
Q |
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||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38235565 |
aacttcatcttctcttgtttccggcacggtggcggtggtggtggtggtggagtagctgtagctgtaactctcacctacactgcatgtttctgaaatgaca |
38235466 |
T |
|
| Q |
118 |
gaaatttcttcagaaggttcctcctccaatggttttttcatgatggggtcttttgtaatttccatattttgcatttgggtcattgtttcttgtgtcaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38235465 |
gaaatttcttcagaaggttcctcctccaatggttttttcatgatggggtcttttgtaatttccatattttgcatttgggtcattgtttcttgtgtcaaat |
38235366 |
T |
|
| Q |
218 |
ttggaacttgttggggtttggaaattggtgtttctgtttcaaatagaacttctttcacagattcctcttcaacaatatgtggtggtgattttgattgtgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38235365 |
ttggaacttgttggggtttggaaattggtgtttctgtttcaaatagaacttctttcacagattcctcttcaacaatatgtggtggtgattttgattgtgg |
38235266 |
T |
|
| Q |
318 |
tggtggaactttgcattttgcttcttgggtgaaattttgttggtttttgagggtattttggtcatcttttggggtgctgatacaacaacccatttgaaag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38235265 |
tggtggaactttgcattttgcttcttgggtgaaattttgttggtttttgagggtattttggtcatcttttggggtgctgatacaacaacccatttgaaag |
38235166 |
T |
|
| Q |
418 |
aaatgatgaagagagtgaaagtggtttagtggtaattgaaacaaggttgagttggatattgcatgtctaatttgattagcttggttttgaaattattgtt |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38235165 |
aaatgatgaagagagtgaaagtggtttagtggtaattgaaacaaggttgagttggatattgcatgcctaatttgattagcttggttttgaaattattgtt |
38235066 |
T |
|
| Q |
518 |
gattgaaaatggaaagagttaaacggctatagaagtgaagagtagaaggagcaacatagtggagtgagtatggatcaagat |
598 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38235065 |
gattgaaaatggaaagagttaaacggctatagaagtgaagagtagaaggagcaacatagtggagtgagtatggatcaagat |
38234985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 4e-52; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 179 - 311
Target Start/End: Complemental strand, 38644006 - 38643874
Alignment:
| Q |
179 |
ccatattttgcatttgggtcattgtttcttgtgtcaaatttggaacttgttggggtttggaaattggtgtttctgtttcaaatagaacttctttcacaga |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| || ||||||||||| |
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| T |
38644006 |
ccatattttgcatttgggtcattgtttcttgtgtcaaataaggaacttgttggggtttagaaattggtgtttctttttcaaatagtacctctttcacaga |
38643907 |
T |
|
| Q |
279 |
ttcctcttcaacaatatgtggtggtgattttga |
311 |
Q |
| |
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|||||||||||||||| |||||||||||||||| |
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| T |
38643906 |
ttcctcttcaacaatacgtggtggtgattttga |
38643874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 13597732 - 13597624
Alignment:
| Q |
18 |
aacttcatcttctcttgttcccggcacggtggcggcggtagtggtggtggagtagctgtagctgtaactctcacctacactgcatgtttctgaaatgaca |
117 |
Q |
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|||||| |||||||||||| ||||||||||||| | || | ||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
13597732 |
aacttcgtcttctcttgtttccggcacggtggcagtggc---gatggtggagtagttgtagctgtaactcccacctacactgcatggttctgaaatgaca |
13597636 |
T |
|
| Q |
118 |
gaaatttcttca |
129 |
Q |
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|||||||||||| |
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| T |
13597635 |
gaaatttcttca |
13597624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 13597502 - 13597450
Alignment:
| Q |
184 |
ttttgcatttgggtcattgtttcttgtgtcaaatttggaacttgttggggttt |
236 |
Q |
| |
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|||||||| |||||||| |||||| ||||||||||||||||||||| ||||| |
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| T |
13597502 |
ttttgcatacgggtcattatttcttatgtcaaatttggaacttgttgaggttt |
13597450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 212 - 292
Target Start/End: Original strand, 16823 - 16903
Alignment:
| Q |
212 |
tcaaatttggaacttgttggggtttggaaattggtgtttctgtttcaaatagaacttctttcacagattcctcttcaacaa |
292 |
Q |
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||||| |||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| |||||| |
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| T |
16823 |
tcaaagttggaacttgttggggtttgaaaattggtgtttctatgtcaaatagaacttctttcacagattcctctgcaacaa |
16903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 37609892 - 37609821
Alignment:
| Q |
58 |
gtggtggtggagtagctgtagctgtaactctcacctacactgcatgtttctgaaatgacagaaatttcttca |
129 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37609892 |
gtggcggtggagtagctgtagctgtaactcccacctacactgcatggttctgaaatgacagaaatttcttca |
37609821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 37609699 - 37609647
Alignment:
| Q |
184 |
ttttgcatttgggtcattgtttcttgtgtcaaatttggaacttgttggggttt |
236 |
Q |
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|||||||| ||||||||| |||||| ||||||||||||||||||||| ||||| |
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| T |
37609699 |
ttttgcatatgggtcattatttcttatgtcaaatttggaacttgttgaggttt |
37609647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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