View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6690_low_12 (Length: 359)

Name: NF6690_low_12
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6690_low_12
NF6690_low_12
[»] chr8 (10 HSPs)
chr8 (3-349)||(15703524-15703870)
chr8 (3-349)||(15697135-15697493)
chr8 (30-349)||(15711806-15712132)
chr8 (13-349)||(15805188-15805522)
chr8 (3-349)||(15813029-15813382)
chr8 (3-216)||(15799785-15800000)
chr8 (51-349)||(15722356-15722653)
chr8 (39-349)||(15764207-15764513)
chr8 (35-150)||(15692668-15692783)
chr8 (294-349)||(15799643-15799698)
[»] chr3 (6 HSPs)
chr3 (60-216)||(4547947-4548103)
chr3 (13-150)||(3080379-3080518)
chr3 (60-150)||(3094865-3094955)
chr3 (44-158)||(3122514-3122628)
chr3 (65-158)||(3102407-3102500)
chr3 (111-149)||(1077386-1077424)
[»] chr4 (13 HSPs)
chr4 (72-152)||(31724892-31724972)
chr4 (74-158)||(36370552-36370636)
chr4 (74-158)||(36376324-36376408)
chr4 (74-158)||(36429369-36429453)
chr4 (71-158)||(36419373-36419460)
chr4 (72-152)||(31717667-31717747)
chr4 (30-158)||(36366402-36366530)
chr4 (74-138)||(36399757-36399821)
chr4 (74-158)||(36435822-36435906)
chr4 (117-152)||(31702382-31702417)
chr4 (74-158)||(36389566-36389650)
chr4 (74-158)||(36407214-36407298)
chr4 (74-158)||(36412337-36412421)
[»] chr2 (3 HSPs)
chr2 (65-141)||(37713839-37713915)
chr2 (74-152)||(2662477-2662555)
chr2 (290-349)||(2672711-2672770)
[»] chr5 (1 HSPs)
chr5 (105-152)||(470063-470110)
[»] chr1 (2 HSPs)
chr1 (92-158)||(21917939-21918005)
chr1 (86-151)||(47771006-47771071)


Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 3 - 349
Target Start/End: Complemental strand, 15703870 - 15703524
Alignment:
Q  3 acgactgagtattatcaatggaatcacgaggacttttataccttcaccaggattctcgacttagagttatccatagagaccttaaagccagcaacgttct 102  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15703870 acgattgagtattatcaatggaatcacgaggacttttataccttcaccaggattctcgacttagagttatccatagagaccttaaagcctgcaacgttct 15703771  T
Q  103 tctagatgatgaaatgaatccaaaaatatcagattttggattggcaagaaaatttgagaaaggccaaagtcagacagaaacaaaaagagttatgggaacc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15703770 tctagatgatgaaatgaatccaaaaatatcagattttggattggcaagaaaatttgagaaaggccaaagtcagacagaaacaaaaagagttatgggaacc 15703671  T
Q  203 tagtaagtgttattgacaactctttttaaaacaaatattagaaaattttacattattcgcaactaacagtgatctgtgcattttaaacagcggatacatg 302  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15703670 tagcaagtgttattgacaactctttttaaaacaaatattagaaaattttacattattcgcaactaacagtgatctgtgcattttaaacagcggatacatg 15703571  T
Q  303 gctccagaatatgctatggctggattattttcagcgaaatctgatgt 349  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  15703570 gctccagaatatgctatggctggattattttcagtgaaatctgatgt 15703524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 3 - 349
Target Start/End: Complemental strand, 15697493 - 15697135
Alignment:
Q  3 acgactgagtattatcaatggaatcac--gaggacttttataccttcaccaggattctcgacttagagttatccatagagaccttaaagccagcaacgtt 100  Q
    |||||| |||||||||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||    
T  15697493 acgactaagtattatcaatggaatcgcaagaggacttttataccttcaccaagattctcgacttagagttatccatagagatctgaaagccagcaatgtt 15697394  T
Q  101 cttctagatgatgaaatgaatccaaaaatatcagattttggattggcaagaaaatttgagaaaggccaaagtcagacagaaacaaaaagagttatgggaa 200  Q
    ||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| |||||||||||| |||||||||||||||| || |    
T  15697393 cttctggatgatgaaatgaatccgaaaatatcagattttggattagcaaggaaatttgaaaaaggtcaaagtcagacaaaaacaaaaagagttattggca 15697294  T
Q  201 cctagtaagtg-ttattgacaactct-ttttaaaacaaatattagaaaattttacattattcgcaa--------ctaacagtgatctgtgcattttaaac 290  Q
    ||||||||||| |||||| ||||||| |||| ||||||||||||||||| || |||| |||| |||        || ||| ||  || |  | |||||||    
T  15697293 cctagtaagtgtttattggcaactctattttcaaacaaatattagaaaagttcacataattcacaactctgagtctgacaatgtacttttgactttaaac 15697194  T
Q  291 agcggatacatggctccagaatatgctatggctggattattttcagcgaaatctgatgt 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  15697193 agcggatacatggctccagaatatgctatggctggattattttcagtgaaatccgatgt 15697135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 30 - 349
Target Start/End: Complemental strand, 15712132 - 15711806
Alignment:
Q  30 gaggacttttataccttcaccaggattctcgacttagagttatccatagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaat 129  Q
    ||||||| ||||| |||||| |||||||||||||||||||||||||||||||  | ||||| ||||| || ||| | || ||||||||||||||||||||    
T  15712132 gaggactgttatatcttcacgaggattctcgacttagagttatccatagagatatgaaagcaagcaatgtacttttggacgatgaaatgaatccaaaaat 15712033  T
Q  130 atcagattttggattggcaagaaaatttgagaaaggccaaagtcagacagaaacaaaaagagttatgggaacctagtaagtgttattgacaactctt-tt 228  Q
    |||||| ||||||||||||||||  ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||| ||    
T  15712032 atcagactttggattggcaagaaggtttgaaaaaggccaaagtcagacagaaacaaaaagagtcatgggaacctagtaagtgtcatcgacaactcttctt 15711933  T
Q  229 ta------aaacaaatattagaaaattttacattattcgcaactaacagtgatctgtgcattttaaacagcggatacatggctccagaatatgctatggc 322  Q
    ||      ||| || ||  |||||| || | ||||||| ||||| |||||| ||| |  |||||||| ||||||||||||||||||||||||||||||||    
T  15711932 tatatatgaaaaaagtaacagaaaacttcatattattcacaactgacagtgttctattgattttaaatagcggatacatggctccagaatatgctatggc 15711833  T
Q  323 tggattattttcagcgaaatctgatgt 349  Q
    ||| |||||||||| ||| ||||||||    
T  15711832 tgggttattttcagtgaagtctgatgt 15711806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 15805522 - 15805188
Alignment:
Q  13 attatcaatggaat--cacgaggacttttataccttcaccaggattctcgacttagagttatccatagagaccttaaagccagcaacgttcttctagatg 110  Q
    ||||||||||||||  ||  ||||||  ||||||||||  ||||||||||||||||||| ||||| ||||| || ||||||||||| |||||||||||||    
T  15805522 attatcaatggaattgcaaaaggactgctataccttcatgaggattctcgacttagagtaatccacagagatctgaaagccagcaatgttcttctagatg 15805423  T
Q  111 atgaaatgaatccaaaaatatcagattttggattggcaagaaaatttgagaaaggccaaagtcagacagaaacaaaaagagttatgggaacctagtaagt 210  Q
    |||||||||||||||||||||||||||||||||| ||||| | |||||| ||||  ||| | | |||| ||||| |||||||| | || ||||||||||     
T  15805422 atgaaatgaatccaaaaatatcagattttggattagcaaggagatttgaaaaagatcaatgcccgacaaaaacagaaagagtttttggcacctagtaagc 15805323  T
Q  211 gttattgacaactctttttaaaacaaatattagaaaattttacattattcgcaactaacagtgatctgtgcattttaaacagcggatacatggctccaga 310  Q
     ||||||  || | |||| ||| ||||||||| ||| ||| |||| |||| ||||| ||||   | | |  |||||| |||| |||||||||||||||||    
T  15805322 attattggaaagt-ttttcaaagcaaatattataaattttcacatgattcacaactgacag---tattttaattttatacagtggatacatggctccaga 15805227  T
Q  311 atatgctatggctggattattttcagcgaaatctgatgt 349  Q
    ||||||||||||||| |||||||||| |||||| |||||    
T  15805226 atatgctatggctggcttattttcagtgaaatccgatgt 15805188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 3 - 349
Target Start/End: Complemental strand, 15813382 - 15813029
Alignment:
Q  3 acgactgagtattatcaatggaatcac--gaggacttttataccttcaccaggattctcgacttagagttatccatagagaccttaaagccagcaacgtt 100  Q
    |||||| || |||||||| |||||| |  |||||||| ||||||||||  ||||||||| ||||||||| ||||| ||||| || ||||| ||||| |||    
T  15813382 acgactaagcattatcaaaggaatcgcaagaggacttctataccttcatgaggattctccacttagagtaatccacagagatctgaaagcgagcaatgtt 15813283  T
Q  101 cttctagatgatgaaatgaatccaaaaatatcagattttggattggcaagaaaatttgagaaaggccaaagtcagacagaaacaaaaagagttatgggaa 200  Q
    ||||| |||||||||||||||||||||||||| ||||||||||| |||||   |||||| ||||  ||| |||| ||| | |||||||||||||| || |    
T  15813282 cttctggatgatgaaatgaatccaaaaatatctgattttggattagcaagggcatttgaaaaagatcaatgtcatacaaagacaaaaagagttattggca 15813183  T
Q  201 cctagtaagtgttattgacaactctttttaaaacaaata--ttagaaaattttacattattcgcaactaacagtgatctgtgcattt----taaacagcg 294  Q
    ||||||| | |||||||| ||||| ||||||||||||||  |||||||| ||||||| |||| ||||| ||| || ||| |  ||||    || | || |    
T  15813182 cctagtacgggttattgaaaactc-ttttaaaacaaatatgttagaaaaatttacatgattcacaactgacattgttctcttgattttatatatatagtg 15813084  T
Q  295 gatacatggctccagaatatgctatggctggattattttcagcgaaatctgatgt 349  Q
    ||||||||||||||||||| ||||||||||| |||||||||| |||||| |||||    
T  15813083 gatacatggctccagaatacgctatggctgggttattttcagtgaaatccgatgt 15813029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 15800000 - 15799785
Alignment:
Q  3 acgactgagtattatcaatggaat--cacgaggacttttataccttcaccaggattctcgacttagagttatccatagagaccttaaagccagcaacgtt 100  Q
    |||||| || ||||||||||||||  || ||||| |  ||||||||||  ||||||||||||||||||| ||||| ||||| || ||||||||||| |||    
T  15800000 acgactaagcattatcaatggaattgcaagaggattgctataccttcatgaggattctcgacttagagtaatccacagagatctgaaagccagcaatgtt 15799901  T
Q  101 cttctagatgatgaaatgaatccaaaaatatcagattttggattggcaagaaaatttgagaaaggccaaagtcagacagaaacaaaaagagttatgggaa 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| |||||||| |||||||||||||| | || |    
T  15799900 cttctggatgatgaaatgaatccaaaaatatcagattttggattggcaagaacatttgataaagaccaatgtcagacaaaaacaaaaagagtttttggca 15799801  T
Q  201 cctagtaagtgttatt 216  Q
    ||||||| ||||||||    
T  15799800 cctagtatgtgttatt 15799785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 51 - 349
Target Start/End: Complemental strand, 15722653 - 15722356
Alignment:
Q  51 aggattctcgacttagagttatccatagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcagattttggattggcaag 150  Q
    |||| |||||||||||||| |||||| |||| || |||||||||||||||||||| ||   |||||||||||||||||||||||||||||| ||||||||    
T  15722653 aggactctcgacttagagtcatccatcgagatctgaaagccagcaacgttcttctggacagtgaaatgaatccaaaaatatcagattttggtttggcaag 15722554  T
Q  151 aaaatttgagaaaggccaaagtcagacagaaacaaaaagagttatgggaacctagtaagtgttattgacaactctttt-taaaacaaatattagaaaatt 249  Q
    ||||||||| |  || | || | ||||| |||||||||||||| | || ||||||||||| |||||| ||| |||||| | || ||||||||||||||||    
T  15722553 aaaatttgaaagcggacgaattgagacaaaaacaaaaagagttgttggtacctagtaagtattattggcaattcttttctgaatcaaatattagaaaatt 15722454  T
Q  250 ttacattat-tcgcaactaacagtgatctgtgcattttaaacagcggatacatggctccagaatatgctatggctggattattttcagcgaaatctgatg 348  Q
       ||| || |  |||||||||    ||| |  |||||||||||||||||||||||||||||||||||||||| |||| | |||||||  ||||| ||||    
T  15722453 ccccataatcttacaactaaca---ttctattgattttaaacagcggatacatggctccagaatatgctatggttggagtgttttcagttaaatccgatg 15722357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 39 - 349
Target Start/End: Complemental strand, 15764513 - 15764207
Alignment:
Q  39 tataccttcaccaggattctcgacttagagttatccatagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcagattt 138  Q
    ||||||||||  ||||||||||||||||||| ||||| || || || ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||    
T  15764513 tataccttcatgaggattctcgacttagagtaatccacagggatctgaaagctagcaatgttcttctggatgatgaaatgaatccaaaaatatcagattt 15764414  T
Q  139 tggattggcaagaaaatttgagaaaggccaaagtcagacagaaacaaaaagagttatgggaacctagtaagtgttattgacaactctttttaaaacaaat 238  Q
    ||| || ||||| | |||||| ||||  ||| |||  | | ||||||| |||||||| ||||||||||||| |||| |  |||  |||||||||||  ||    
T  15764413 tgggttagcaaggacatttgaaaaagatcaatgtccaagaaaaacaaatagagttatcggaacctagtaagcgttagttgcaa--ctttttaaaac--at 15764318  T
Q  239 attagaaaattttacattattcgcaactaacagtgatctgtgcattttaaacagcggatacatggctccagaatatgctatggctggattattttcagcg 338  Q
    || |||| |||| |||| |||| ||| | | | || ||| |  | |||  | || |||||||||||||||||||||||||||||||| |||||||| | |    
T  15764317 atcagaagatttcacatgattcacaattgaaaatgttctattgactttttatagtggatacatggctccagaatatgctatggctgggttattttcggtg 15764218  T
Q  339 aaatctgatgt 349  Q
    ||||| |||||    
T  15764217 aaatccgatgt 15764207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 150
Target Start/End: Complemental strand, 15692783 - 15692668
Alignment:
Q  35 cttttataccttcaccaggattctcgacttagagttatccatagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcag 134  Q
    ||||||||||| ||  |||| ||| || | ||||| || |||||||| || ||||| ||||| |||||  ||||| ||||||||||||| ||||||||||    
T  15692783 cttttatacctccatgaggactctagattaagagtaattcatagagatctcaaagctagcaatgttctattagatcatgaaatgaatcccaaaatatcag 15692684  T
Q  135 attttggattggcaag 150  Q
    ||||||||||||||||    
T  15692683 attttggattggcaag 15692668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 15799698 - 15799643
Alignment:
Q  294 ggatacatggctccagaatatgctatggctggattattttcagcgaaatctgatgt 349  Q
    |||||||||||||| ||||| ||||||||||| |||||||||| |||||| |||||    
T  15799698 ggatacatggctcctgaatacgctatggctgggttattttcagtgaaatccgatgt 15799643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 60 - 216
Target Start/End: Complemental strand, 4548103 - 4547947
Alignment:
Q  60 gacttagagttatccatagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcagattttggattggcaagaaaatttga 159  Q
    |||||||||| |||||||||||||| ||||| || || |||||| ||||| | || ||||||||||||||||| |||||||||||||||||   ||||||    
T  4548103 gacttagagtaatccatagagacctaaaagcaagtaatgttcttttagatcaagagatgaatccaaaaatatctgattttggattggcaagggcatttga 4548004  T
Q  160 gaaaggccaaagtcagacagaaacaaaaagagttatgggaacctagtaagtgttatt 216  Q
     ||||| ||||||||   | | |||| |||| ||||||| || ||||| ||||||||    
T  4548003 aaaaggtcaaagtcaagaaaacacaagaagaattatgggcacatagtatgtgttatt 4547947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 3080379 - 3080518
Alignment:
Q  13 attatcaatggaat--cacgaggacttttataccttcaccaggattctcgacttagagttatccatagagaccttaaagccagcaacgttcttctagatg 110  Q
    ||||||||||||||  ||  |||||| |||||||||||  | || ||| |||||||||| |||||||||||||| ||||| || || |||||  |||||     
T  3080379 attatcaatggaattgcaaaaggactcttataccttcatgaagactctagacttagagtaatccatagagacctaaaagcaagtaatgttctattagatc 3080478  T
Q  111 atgaaatgaatccaaaaatatcagattttggattggcaag 150  Q
    | || ||||||||||||||||| |||||||||||||||||    
T  3080479 aagagatgaatccaaaaatatctgattttggattggcaag 3080518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 3094865 - 3094955
Alignment:
Q  60 gacttagagttatccatagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcagattttggattggcaag 150  Q
    |||| ||||| |||||||||||||| ||||| || || |||||  ||||| | || ||||||||||||||||| |||||||||||||||||    
T  3094865 gactaagagtaatccatagagacctaaaagcaagtaatgttctcttagatcaagagatgaatccaaaaatatctgattttggattggcaag 3094955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 3122514 - 3122628
Alignment:
Q  44 cttcaccaggattctcgacttagagttatccatagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcagattttggat 143  Q
    |||||| |||| ||| |||| || ||||| || |||||||| |||||||||||  || |  ||||| ||||||||||||||||||| ||||| ||||||     
T  3122514 cttcacgaggactctagactcagggttattcacagagacctgaaagccagcaatattttgttagatcatgaaatgaatccaaaaatttcagactttggac 3122613  T
Q  144 tggcaagaaaatttg 158  Q
    | ||||||| |||||    
T  3122614 tagcaagaacatttg 3122628  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 158
Target Start/End: Original strand, 3102407 - 3102500
Alignment:
Q  65 agagttatccatagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcagattttggattggcaagaaaatttg 158  Q
    |||||||| || |||||||| ||||| |||||  ||||  ||||| | ||||||||||||||||| |||||||||||| | ||||||| |||||    
T  3102407 agagttattcacagagacctgaaagctagcaatattctattagatcaagaaatgaatccaaaaatctcagattttggacttgcaagaacatttg 3102500  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 1077386 - 1077424
Alignment:
Q  111 atgaaatgaatccaaaaatatcagattttggattggcaa 149  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  1077386 atgatatgaatccaaaaatatcagattttggcttggcaa 1077424  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 31724892 - 31724972
Alignment:
Q  72 tccatagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcagattttggattggcaagaa 152  Q
    ||||||||||||| |||  |||||| ||| | |||||||||    ||||||||||||||||||||||||||||||| ||||    
T  31724892 tccatagagacctcaaaagcagcaatgttttactagatgatactttgaatccaaaaatatcagattttggattggctagaa 31724972  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 36370552 - 36370636
Alignment:
Q  74 catagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcagattttggattggcaagaaaatttg 158  Q
    |||||||| || ||||||||||| ||||| || |||| |||||||||||| ||||| |||||||||||  |||| |||| |||||    
T  36370552 catagagatctaaaagccagcaatgttctccttgatgctgaaatgaatcccaaaatctcagattttggtatggctagaatatttg 36370636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 36376324 - 36376408
Alignment:
Q  74 catagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcagattttggattggcaagaaaatttg 158  Q
    |||||||| || ||||||||||||||||| || |||| || ||||||||| ||||| |||||||||||  |||| |||| |||||    
T  36376324 catagagatctaaaagccagcaacgttctcctcgatgctgcaatgaatcccaaaatctcagattttggtatggctagaatatttg 36376408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 36429369 - 36429453
Alignment:
Q  74 catagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcagattttggattggcaagaaaatttg 158  Q
    |||||||| || ||||||||||||||||| || |||| || ||||||||| ||||| |||||||||||  |||| |||| |||||    
T  36429369 catagagatctaaaagccagcaacgttctcctcgatgctgcaatgaatcccaaaatctcagattttggtatggctagaatatttg 36429453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 36419373 - 36419460
Alignment:
Q  71 atccatagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcagattttggattggcaagaaaatttg 158  Q
    ||||||||||| || ||||||||||||||||| || |||| || ||||||||| ||||| || ||||||||  |||| |||| |||||    
T  36419373 atccatagagatctaaaagccagcaacgttctccttgatgctgtaatgaatcccaaaatctcggattttggtatggctagaatatttg 36419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 31717667 - 31717747
Alignment:
Q  72 tccatagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcagattttggattggcaagaa 152  Q
    |||||||||| || |||  |||||| ||| | |||||||||    ||||||||||||||||||||||||||||||| ||||    
T  31717667 tccatagagatctcaaaagcagcaatgttttactagatgatactttgaatccaaaaatatcagattttggattggctagaa 31717747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 36366402 - 36366530
Alignment:
Q  30 gaggacttttataccttcaccaggattctcgacttagagttatccatagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaat 129  Q
    |||||||| | || |||||||| |||||| || ||||  | ||||||||||| ||||| || |||||| |||| || ||||  || ||||||||||| ||    
T  36366402 gaggacttctgtatcttcaccaagattctagatttaggatcatccatagagatcttaaggcaagcaacattctacttgatggagagatgaatccaaagat 36366501  T
Q  130 atcagattttggattggcaagaaaatttg 158  Q
    |||||| || ||  ||||||||| |||||    
T  36366502 atcagacttcgggatggcaagaatatttg 36366530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 36399757 - 36399821
Alignment:
Q  74 catagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcagattt 138  Q
    |||||||| || ||||||||||| ||||| || |||| |||||||||||| ||||| ||||||||    
T  36399757 catagagatctaaaagccagcaatgttctccttgatgctgaaatgaatcccaaaatctcagattt 36399821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 36435822 - 36435906
Alignment:
Q  74 catagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcagattttggattggcaagaaaatttg 158  Q
    |||||||| || ||||||||||| ||||| || |||| || ||||||||| ||||| |||||||||||  |||| |||| |||||    
T  36435822 catagagatctaaaagccagcaatgttctccttgatgctgcaatgaatcccaaaatctcagattttggtatggctagaatatttg 36435906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 31702382 - 31702417
Alignment:
Q  117 tgaatccaaaaatatcagattttggattggcaagaa 152  Q
    ||||||||||||||||||||||||||||||| ||||    
T  31702382 tgaatccaaaaatatcagattttggattggctagaa 31702417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 36389566 - 36389650
Alignment:
Q  74 catagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcagattttggattggcaagaaaatttg 158  Q
    ||||||||||| ||||||||||| ||||| || || | || |||||| || ||||| |||||||||||  |||| |||| |||||    
T  36389566 catagagacctaaaagccagcaatgttctccttgacgctgcaatgaaccctaaaatctcagattttggtatggctagaatatttg 36389650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 36407214 - 36407298
Alignment:
Q  74 catagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcagattttggattggcaagaaaatttg 158  Q
    |||||||| || ||||||||||| ||||| || || | || ||||||||| ||||| |||||||||||  |||| |||| |||||    
T  36407214 catagagatctaaaagccagcaatgttctccttgacgctgcaatgaatcccaaaatctcagattttggtatggctagaatatttg 36407298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 36412337 - 36412421
Alignment:
Q  74 catagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcagattttggattggcaagaaaatttg 158  Q
    |||||||| || ||||||||||| ||||| || || | || ||||||||| ||||| |||||||||||  |||| |||| |||||    
T  36412337 catagagatctaaaagccagcaatgttctccttgacgctgcaatgaatcccaaaatctcagattttggtatggctagaatatttg 36412421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 37713915 - 37713839
Alignment:
Q  65 agagttatccatagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcagattttgg 141  Q
    ||||| || ||||||||||||||| | |||||| ||||| |||||||||| |||| |||||| |||||||| |||||    
T  37713915 agagtgattcatagagaccttaaaacaagcaacattcttttagatgatgagatgattccaaagatatcagactttgg 37713839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 2662555 - 2662477
Alignment:
Q  74 catagagaccttaaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcagattttggattggcaagaa 152  Q
    |||||||| || ||||| ||||| |||||| ||||||  ||||||||||||||||| || || |||||| |||||||||    
T  2662555 catagagatctaaaagcaagcaatgttcttttagatggcgaaatgaatccaaaaatttctgactttggaatggcaagaa 2662477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 2672711 - 2672770
Alignment:
Q  290 cagcggatacatggctccagaatatgctatggctggattattttcagcgaaatctgatgt 349  Q
    ||||||||| ||| ||||||||||||| |||| |||||  ||||| ||||||||||||||    
T  2672711 cagcggatatatgtctccagaatatgcaatgggtggatatttttctgcgaaatctgatgt 2672770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 470110 - 470063
Alignment:
Q  105 tagatgatgaaatgaatccaaaaatatcagattttggattggcaagaa 152  Q
    |||||||  |||||||||||||||||||||||||||| ||||||||||    
T  470110 tagatgacaaaatgaatccaaaaatatcagattttggtttggcaagaa 470063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 21918005 - 21917939
Alignment:
Q  92 agcaacgttcttctagatgatgaaatgaatccaaaaatatcagattttggattggcaagaaaatttg 158  Q
    |||||| ||||||||||||| || ||| | |||||||| |||||||||||| | ||||||| |||||    
T  21918005 agcaacattcttctagatgaggagatgcaaccaaaaatctcagattttggaatagcaagaacatttg 21917939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 47771006 - 47771071
Alignment:
Q  86 aaagccagcaacgttcttctagatgatgaaatgaatccaaaaatatcagattttggattggcaaga 151  Q
    ||||| |||||| ||||  |||| ||||| |||||||| || ||||| ||||||||||||||||||    
T  47771006 aaagcaagcaacattctcttagacgatgagatgaatcctaagatatctgattttggattggcaaga 47771071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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