View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_low_13 (Length: 358)
Name: NF6690_low_13
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 66 - 339
Target Start/End: Original strand, 6454314 - 6454587
Alignment:
| Q |
66 |
agtactctatactataccctaattaaatcacatcctaaaatgcacactttattttcacctttgttagaaccagacctatctttaaacataagtcttcctt |
165 |
Q |
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| T |
6454314 |
agtactctatactataccctaattaaatcacatcctaaaatgcatactttattttcacctttgttagaaccagacctatctttaaacataagtcttcctt |
6454413 |
T |
|
| Q |
166 |
ctaatatttctgattctaaacccaaaggaataacaaatatatgttcaatatcaactacttctgattcagctagtagtggaagtgagttaagcaatgaaaa |
265 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
6454414 |
ctaatatttctgattctgaacccaaaggaataacaaatatatgttcaatatcaactacttctgattcagctagtagtggaagtgaattaagccatgaaaa |
6454513 |
T |
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| Q |
266 |
tccatttagctatcctcatcaacgtgacccaacattgagattaggctttggaaattcagatttgatggatccac |
339 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6454514 |
tccatttatctatcctcatcaacgtgacccaacattgagattaggctttggaaattcagatttgatgaatccac |
6454587 |
T |
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