View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6690_low_14 (Length: 354)

Name: NF6690_low_14
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6690_low_14
NF6690_low_14
[»] chr1 (6 HSPs)
chr1 (88-347)||(2628184-2628443)
chr1 (131-212)||(21507138-21507219)
chr1 (129-262)||(48492751-48492885)
chr1 (224-275)||(43356848-43356899)
chr1 (224-266)||(11653102-11653144)
chr1 (227-263)||(13929313-13929349)
[»] scaffold0176 (1 HSPs)
scaffold0176 (142-283)||(16041-16182)
[»] chr3 (11 HSPs)
chr3 (132-288)||(31282501-31282657)
chr3 (132-288)||(55423390-55423546)
chr3 (128-183)||(46495596-46495651)
chr3 (201-263)||(21515283-21515344)
chr3 (133-189)||(40241671-40241727)
chr3 (229-283)||(40892157-40892211)
chr3 (201-271)||(40896781-40896851)
chr3 (201-275)||(46496859-46496933)
chr3 (128-187)||(21515570-21515629)
chr3 (225-266)||(1070090-1070131)
chr3 (207-275)||(17029669-17029737)
[»] chr7 (1 HSPs)
chr7 (129-262)||(44554727-44554860)
[»] chr6 (3 HSPs)
chr6 (128-185)||(7312242-7312299)
chr6 (227-266)||(31740334-31740373)
chr6 (128-181)||(24756986-24757039)
[»] chr8 (6 HSPs)
chr8 (131-261)||(3138823-3138953)
chr8 (131-212)||(42835932-42836013)
chr8 (224-266)||(23152499-23152541)
chr8 (224-262)||(24853383-24853421)
chr8 (227-263)||(36071440-36071476)
chr8 (227-263)||(37474098-37474134)
[»] chr4 (6 HSPs)
chr4 (193-283)||(20825438-20825527)
chr4 (132-203)||(28657081-28657152)
chr4 (132-275)||(11243717-11243860)
chr4 (137-187)||(9791742-9791792)
chr4 (174-283)||(28657154-28657263)
chr4 (227-263)||(44305041-44305077)
[»] chr2 (3 HSPs)
chr2 (224-263)||(2717837-2717876)
chr2 (224-266)||(23461237-23461279)
chr2 (227-267)||(11386638-11386678)
[»] chr5 (3 HSPs)
chr5 (224-266)||(43476283-43476325)
chr5 (227-263)||(328216-328252)
chr5 (227-263)||(19524001-19524037)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 88 - 347
Target Start/End: Original strand, 2628184 - 2628443
Alignment:
Q  88 gaagatgaagaaatgttnnnnnnnntagatgtttgtgatgcaatgttggtccacctaatacattttgagttaaagttaactgacatggatcaaattgact 187  Q
    |||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2628184 gaagatgaagaaatgttaaaaaaaatagatgtttgtgatgcaatgttggtccacctaatacattttgagttaaagttaactgacatggatcaaattgtct 2628283  T
Q  188 gatggagcatatttgagggaccaaacggaaatttcgtagagttaagggaccaaattgaaaacaagaaataagttaaagggccatttataaaattaaacct 287  Q
    || |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||    
T  2628284 gacggagcatatttgagggaccaaacggaaattttttagagttaagggaccaaattgaaaacaacaaataagttaaaggaccatttataaaattaagcct 2628383  T
Q  288 attttttaaaagtacataaagcggccccctaaagtgttgtttctggctcccctgatgtcc 347  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  2628384 attttttaaaagtacataaagcagccccctaaagtgttgtttctggctcccccgatgtcc 2628443  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 212
Target Start/End: Complemental strand, 21507219 - 21507138
Alignment:
Q  131 tgttggtccacctaatacattttgagttaaagttaactgacatggatcaaattgactgatggagcatatttgagggaccaaa 212  Q
    |||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| |||||| |||||| ||||||||    
T  21507219 tgttggtccacctaatacatttggaattaaagttaactgacgtggatcaaattgactgacggagcaaatttgaaggaccaaa 21507138  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 129 - 262
Target Start/End: Complemental strand, 48492885 - 48492751
Alignment:
Q  129 aatgttggtccacctaatacattttgagttaaa-gttaactgacatggatcaaattgactgatggagcatatttgagggacc-aaacggaaatttcgtag 226  Q
    ||||||||||||||  | |||||| |||||||| |||||| ||| |||||||| |||||||| ||||||||||||||||||| ||| ||||| ||  ||     
T  48492885 aatgttggtccaccatagacatttggagttaaaagttaacagacttggatcaatttgactgacggagcatatttgagggaccaaaaaggaaaatt-ttaa 48492787  T
Q  227 agttaagggaccaaattgaaaacaagaaataagtta 262  Q
    ||||| ||||||||| ||||||||| ||||||||||    
T  48492786 agttatgggaccaaaatgaaaacaacaaataagtta 48492751  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 43356899 - 43356848
Alignment:
Q  224 tagagttaagggaccaaattgaaaacaagaaataagttaaagggccatttat 275  Q
    |||||||||||||||||||||||||||| ||||||||| |||| ||||||||    
T  43356899 tagagttaagggaccaaattgaaaacaacaaataagttgaaggaccatttat 43356848  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 11653102 - 11653144
Alignment:
Q  224 tagagttaagggaccaaattgaaaacaagaaataagttaaagg 266  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||    
T  11653102 tagagttaagggaccaaaatgaaaccaaaaaataagttaaagg 11653144  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 13929349 - 13929313
Alignment:
Q  227 agttaagggaccaaattgaaaacaagaaataagttaa 263  Q
    ||||||||||||||||||||||| | |||||||||||    
T  13929349 agttaagggaccaaattgaaaaccaaaaataagttaa 13929313  T

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Target: scaffold0176 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 142 - 283
Target Start/End: Complemental strand, 16182 - 16041
Alignment:
Q  142 ctaatacattttgagttaaagttaactgacatggatcaaattgactgatggagcatatttgagggaccaaac--ggaaatttcgtagagttaagggacca 239  Q
    ||||||| |||||||||||||||||||||||| ||||||| |||||||  || |||||||||||||||||||  | ||||||  || |||||||||| ||    
T  16182 ctaatacgttttgagttaaagttaactgacatagatcaaactgactgacagatcatatttgagggaccaaacaagaaaattt--taaagttaagggatca 16085  T
Q  240 aattgaaaacaagaaataagttaaagggccatttataaaattaa 283  Q
    ||| |||||||| ||||||||||| || ||||||||| ||||||    
T  16084 aatcgaaaacaacaaataagttaagggaccatttatataattaa 16041  T

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Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 132 - 288
Target Start/End: Original strand, 31282501 - 31282657
Alignment:
Q  132 gttggtccacctaatacattttgagttaaagttaactgacatggatcaaattgactgatggagcatatttgagggaccaaacggaaatttcgtagagtta 231  Q
    |||||||||||||| | |||| | ||| ||||||||||| |||||| ||| ||||||| ||||||||||||| ||||||||  |||| ||  |||| |||    
T  31282501 gttggtccacctaagatatttggggttgaagttaactgaaatggattaaaatgactgacggagcatatttgaaggaccaaaatgaaaatttttagaatta 31282600  T
Q  232 agggaccaaattgaaaacaagaaataagttaaagggccatttataaaattaaaccta 288  Q
    |||||||| || |||||||| ||||||||| | || ||||||||| |||||| ||||    
T  31282601 agggaccatatcgaaaacaacaaataagttgagggaccatttatataattaagccta 31282657  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 288
Target Start/End: Complemental strand, 55423546 - 55423390
Alignment:
Q  132 gttggtccacctaatacattttgagttaaagttaactgacatggatcaaattgactgatggagcatatttgagggaccaaacggaaatttcgtagagtta 231  Q
    |||||||||||||| |||||| | ||| ||||||||||| ||| || ||| ||||| | ||||||||||||| ||||||||  |||||||  ||||  ||    
T  55423546 gttggtccacctaagacatttggggttgaagttaactgaaatgaattaaaatgacttacggagcatatttgaaggaccaaaatgaaattttttagaaata 55423447  T
Q  232 agggaccaaattgaaaacaagaaataagttaaagggccatttataaaattaaaccta 288  Q
    |||||||| || |||||||| ||||||||| |  | ||||||||| |||||| ||||    
T  55423446 agggaccatatcgaaaacaacaaataagttgagtgaccatttatataattaagccta 55423390  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 46495651 - 46495596
Alignment:
Q  128 caatgttggtccacctaatacattttgagttaaagttaactgacatggatcaaatt 183  Q
    |||||||||| |||||||||||||| |  |||||||||||||||||||||||||||    
T  46495651 caatgttggttcacctaatacatttgggtttaaagttaactgacatggatcaaatt 46495596  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 21515344 - 21515283
Alignment:
Q  201 tgagggaccaaacggaaatttcgtagagttaagggaccaaattgaaaacaagaaataagttaa 263  Q
    |||||||||||||||||||||  ||||||||| ||||||||| |||||||| |||||||||||    
T  21515344 tgagggaccaaacggaaattttttagagttaa-ggaccaaatcgaaaacaacaaataagttaa 21515283  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 40241671 - 40241727
Alignment:
Q  133 ttggtccacctaatacattttgagttaaagttaactgacatggatcaaattgactga 189  Q
    |||||| ||||||||||||| |||||||||| ||||||||| ||||||| |||||||    
T  40241671 ttggtcgacctaatacatttggagttaaagtcaactgacattgatcaaactgactga 40241727  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 40892211 - 40892157
Alignment:
Q  229 ttaagggaccaaattgaaaacaagaaataagttaaagggccatttataaaattaa 283  Q
    |||||||| ||||||||||||||||||||||||||  | ||||||||| ||||||    
T  40892211 ttaagggatcaaattgaaaacaagaaataagttaagagaccatttatataattaa 40892157  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 40896781 - 40896851
Alignment:
Q  201 tgagggaccaaacggaaatttcgtagagttaagggaccaaattgaaaacaagaaataagttaaagggccat 271  Q
    |||||||||||| ||||||||  |||| |||||| |||||||  ||||||| |||||||||||||| ||||    
T  40896781 tgagggaccaaatggaaattttttagaattaaggaaccaaatcaaaaacaacaaataagttaaaggaccat 40896851  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 275
Target Start/End: Original strand, 46496859 - 46496933
Alignment:
Q  201 tgagggaccaaacggaaatttcgtagagttaagggaccaaattgaaaacaagaaataagttaaagggccatttat 275  Q
    ||||||||||||  |||||||  || |||||||||||||||| |||||||| ||||||||| | || ||||||||    
T  46496859 tgagggaccaaattgaaattttttaaagttaagggaccaaatcgaaaacaacaaataagttgagggaccatttat 46496933  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 21515570 - 21515629
Alignment:
Q  128 caatgttggtccacctaatacattttgagttaaagttaactgacatggatcaaattgact 187  Q
    |||| ||| |||||||||||||||| |||||||||||||| ||||  |||||| ||||||    
T  21515570 caatattgatccacctaatacatttggagttaaagttaaccgacagagatcaatttgact 21515629  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 1070090 - 1070131
Alignment:
Q  225 agagttaagggaccaaattgaaaacaagaaataagttaaagg 266  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||    
T  1070090 agagttaagggaccaaaatgaaaccaaaaaataagttaaagg 1070131  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 17029737 - 17029669
Alignment:
Q  207 accaaacggaaatttcgtagagttaagggaccaaattgaaaacaagaaataagttaaagggccatttat 275  Q
    |||||||||||||||  || | |||||||||||||| ||||| || ||||||||||  || ||||||||    
T  17029737 accaaacggaaattttttaaaattaagggaccaaatcgaaaagaacaaataagttatgggaccatttat 17029669  T

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Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 129 - 262
Target Start/End: Original strand, 44554727 - 44554860
Alignment:
Q  129 aatgttggtccacctaatacattttgagttaaagttaactgacatggatcaaattgactgatggagcatatttgagggaccaaacggaaatttcgtagag 228  Q
    ||||||||||||||  | |||||| |||||||||||||  ||| |||||||| |||||||| ||||||||||||||||||||||  ||||     || ||    
T  44554727 aatgttggtccaccatagacatttggagttaaagttaatagacttggatcaatttgactgacggagcatatttgagggaccaaaaagaaaaaatttaaag 44554826  T
Q  229 ttaagggaccaaattgaaaacaagaaataagtta 262  Q
    ||| ||||||||| ||||||||| ||||||||||    
T  44554827 ttatgggaccaaaatgaaaacaacaaataagtta 44554860  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 7312242 - 7312299
Alignment:
Q  128 caatgttggtccacctaatacattttgagttaaagttaactgacatggatcaaattga 185  Q
    ||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||    
T  7312242 caatgttggtccatctaatacatttggggttaaagttaactgacatggatcaaattga 7312299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 266
Target Start/End: Original strand, 31740334 - 31740373
Alignment:
Q  227 agttaagggaccaaattgaaaacaagaaataagttaaagg 266  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  31740334 agttaagggaccaaattgaaaacaaaaaataagttaaagg 31740373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 24757039 - 24756986
Alignment:
Q  128 caatgttggtccacctaatacattttgagttaaagttaactgacatggatcaaa 181  Q
    |||||||| |||| ||||||| |||   ||||||||||||||||||||||||||    
T  24757039 caatgttgctccatctaatacttttgtggttaaagttaactgacatggatcaaa 24756986  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 261
Target Start/End: Original strand, 3138823 - 3138953
Alignment:
Q  131 tgttggtccacctaatacattttgagttaaagttaactgacatggatcaaattgactgatggagcatatttgagggac-caaacggaaatttcgtagagt 229  Q
    |||||||| |||||||| |||| | |||||||||||||||| ||||||||||||||| | ||||||||||| | ||||  ||| |||||  |  ||||||    
T  3138823 tgttggtctacctaatatatttggggttaaagttaactgacttggatcaaattgactaacggagcatatttaaaggactaaaaaggaaaaat-ttagagt 3138921  T
Q  230 taagggaccaaattgaaaacaagaaataagtt 261  Q
    || | ||||||| ||||||||| |||||||||    
T  3138922 tatgagaccaaaatgaaaacaacaaataagtt 3138953  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 212
Target Start/End: Complemental strand, 42836013 - 42835932
Alignment:
Q  131 tgttggtccacctaatacattttgagttaaagttaactgacatggatcaaattgactgatggagcatatttgagggaccaaa 212  Q
    ||||||||||||||||| |||| | ||||||||||||| || | ||||||| ||||| | ||| ||||||| | ||||||||    
T  42836013 tgttggtccacctaatatatttggggttaaagttaactcactttgatcaaactgactaacggaccatatttaaaggaccaaa 42835932  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 23152499 - 23152541
Alignment:
Q  224 tagagttaagggaccaaattgaaaacaagaaataagttaaagg 266  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||    
T  23152499 tagagttaagggaccaaagtgaaaccaaaaaataagttaaagg 23152541  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 24853383 - 24853421
Alignment:
Q  224 tagagttaagggaccaaattgaaaacaagaaataagtta 262  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  24853383 tagagttatgggaccaaattgaaaacaacaaataagtta 24853421  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 36071440 - 36071476
Alignment:
Q  227 agttaagggaccaaattgaaaacaagaaataagttaa 263  Q
    ||||||||||||||||||||||||| | |||||||||    
T  36071440 agttaagggaccaaattgaaaacaaaatataagttaa 36071476  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 37474098 - 37474134
Alignment:
Q  227 agttaagggaccaaattgaaaacaagaaataagttaa 263  Q
    ||||||||||||||||||||||| | |||||||||||    
T  37474098 agttaagggaccaaattgaaaaccataaataagttaa 37474134  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 283
Target Start/End: Complemental strand, 20825527 - 20825438
Alignment:
Q  193 agcatatttgagggaccaaacggaaatttcgtagagttaagggaccaaattgaaaacaagaaataagttaaagggccatttataaaattaa 283  Q
    ||||||||||||||||||||  |||||||  |||| |||| ||||||||| |||||||| ||||||||| |||| ||||||||| ||||||    
T  20825527 agcatatttgagggaccaaatagaaattttttagaattaaaggaccaaatcgaaaacaacaaataagtt-aaggaccatttatacaattaa 20825438  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 28657081 - 28657152
Alignment:
Q  132 gttggtccacctaatacattttgagttaaagttaactgacatggatcaaattgactgatggagcatatttga 203  Q
    |||||||||||||| |||||| | ||||||||||||||| |||||| ||| ||||||| | |||||||||||    
T  28657081 gttggtccacctaagacatttggggttaaagttaactgaaatggattaaaatgactgacgaagcatatttga 28657152  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 275
Target Start/End: Original strand, 11243717 - 11243860
Alignment:
Q  132 gttggtccacctaatacattttgagttaaagttaactgacatggatcaaattgactgatggagcatatttgaggga--ccaaacggaaatttcgtagagt 229  Q
    |||||||||||||| |||||| |  |||||||||||| |||||||||||| |||||||   | |||||||||  ||    ||| | ||||||  ||||||    
T  11243717 gttggtccacctaagacatttgggattaaagttaactaacatggatcaaactgactgacataacatatttgaatgattgaaaaagaaaattt--tagagt 11243814  T
Q  230 taagggaccaaattgaaaacaagaaataagttaaagggccatttat 275  Q
    |||||||||||||  ||||||| ||||||||| | || ||||||||    
T  11243815 taagggaccaaatctaaaacaacaaataagttgagggaccatttat 11243860  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 9791742 - 9791792
Alignment:
Q  137 tccacctaatacattttgagttaaagttaactgacatggatcaaattgact 187  Q
    |||||||||||||||| | ||||| |||||||||||| ||||||| |||||    
T  9791742 tccacctaatacatttggggttaatgttaactgacattgatcaaactgact 9791792  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 283
Target Start/End: Original strand, 28657154 - 28657263
Alignment:
Q  174 ggatcaaattgactgatggagcatatttgagggaccaaac-ggaaatttcgtagagttaagggaccaaattgaaaacaagaaataagttaaagggccatt 272  Q
    |||| ||| ||||||| ||||||||||||| ||||||||  ||||| ||  |||| ||||||||||| || |||||||| |||||| || | || |||||    
T  28657154 ggattaaaatgactgacggagcatatttgaaggaccaaaatggaaaattt-tagaattaagggaccatatcgaaaacaacaaataaattgagggaccatt 28657252  T
Q  273 tataaaattaa 283  Q
    |||| ||||||    
T  28657253 tatataattaa 28657263  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 44305041 - 44305077
Alignment:
Q  227 agttaagggaccaaattgaaaacaagaaataagttaa 263  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  44305041 agttaggggaccaaattgaaaacaaaaaataagttaa 44305077  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 2717837 - 2717876
Alignment:
Q  224 tagagttaagggaccaaattgaaaacaagaaataagttaa 263  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  2717837 tagagttaagggaccaaattgaaaacaacaaataagttaa 2717876  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 23461279 - 23461237
Alignment:
Q  224 tagagttaagggaccaaattgaaaacaagaaataagttaaagg 266  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||    
T  23461279 tagagttaagggaccaaaatgaaaccaaaaaataagttaaagg 23461237  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 11386678 - 11386638
Alignment:
Q  227 agttaagggaccaaattgaaaacaagaaataagttaaaggg 267  Q
    ||||||||||||||||| ||||| | |||||||||||||||    
T  11386678 agttaagggaccaaattaaaaactaaaaataagttaaaggg 11386638  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 43476283 - 43476325
Alignment:
Q  224 tagagttaagggaccaaattgaaaacaagaaataagttaaagg 266  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||    
T  43476283 tagagttaagggaccaaaatgaaaccaaaaaataagttaaagg 43476325  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 328216 - 328252
Alignment:
Q  227 agttaagggaccaaattgaaaacaagaaataagttaa 263  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  328216 agttaggggaccaaattgaaaacaaaaaataagttaa 328252  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 19524037 - 19524001
Alignment:
Q  227 agttaagggaccaaattgaaaacaagaaataagttaa 263  Q
    ||||||||||||||||||||||| | |||||||||||    
T  19524037 agttaagggaccaaattgaaaaccaaaaataagttaa 19524001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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