View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6690_low_15 (Length: 351)

Name: NF6690_low_15
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6690_low_15
NF6690_low_15
[»] chr2 (3 HSPs)
chr2 (51-99)||(17616578-17616626)
chr2 (213-282)||(7501378-7501446)
chr2 (56-100)||(17698334-17698378)
[»] chr8 (1 HSPs)
chr8 (213-279)||(24279642-24279707)
[»] chr4 (1 HSPs)
chr4 (9-82)||(23056985-23057059)
[»] chr1 (3 HSPs)
chr1 (213-279)||(37701557-37701622)
chr1 (213-279)||(37683895-37683960)
chr1 (14-72)||(38336811-38336869)
[»] chr6 (1 HSPs)
chr6 (214-282)||(21528877-21528944)
[»] chr3 (1 HSPs)
chr3 (214-282)||(51229546-51229613)
[»] chr7 (1 HSPs)
chr7 (214-268)||(43779796-43779849)
[»] chr5 (1 HSPs)
chr5 (213-278)||(23023852-23023916)


Alignment Details
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 17616578 - 17616626
Alignment:
Q  51 ccaccaccggatctactcaaattcgtccatccgaccacgaccctgccgt 99  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||||||    
T  17616578 ccaccgccggatctactcaaatccgtccatccaaccacgaccctgccgt 17616626  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 7501378 - 7501446
Alignment:
Q  213 gcatagttttaaaactcggatcggtgatcaacttgataaagggtactgggtcactgagtcattggttcaa 282  Q
    |||||||||||||||||||| |||||||| ||| | |  ||||||||||||||| | |||||||||||||    
T  7501378 gcatagttttaaaactcggaccggtgatcgactcggt-cagggtactgggtcacagggtcattggttcaa 7501446  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 17698334 - 17698378
Alignment:
Q  56 accggatctactcaaattcgtccatccgaccacgaccctgccgtc 100  Q
    ||||||||||||||||| ||||  ||| |||||||||||||||||    
T  17698334 accggatctactcaaatccgtctctcctaccacgaccctgccgtc 17698378  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 24279707 - 24279642
Alignment:
Q  213 gcatagttttaaaactcggatcggtgatcaacttgataaagggtactgggtcactgagtcattggtt 279  Q
    ||||||||||||||||||||||||| ||  ||||||   ||| ||||||||||||||||||||||||    
T  24279707 gcatagttttaaaactcggatcggtcattgacttga-cgaggttactgggtcactgagtcattggtt 24279642  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 23057059 - 23056985
Alignment:
Q  9 caccaccatcacccatcctccatctcaccaccgccgttcacccc-accaccggatctactcaaattcgtccatcc 82  Q
    ||||| |||||| |||||| |  |||||||||| |||||||||| |||||||||||||||||||||  |||||||    
T  23057059 caccatcatcactcatccttctcctcaccaccgtcgttcacccccaccaccggatctactcaaatttttccatcc 23056985  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 37701622 - 37701557
Alignment:
Q  213 gcatagttttaaaactcggatcggtgatcaacttgataaagggtactgggtcactgagtcattggtt 279  Q
    ||||||||||||||||||||  |||||||||||   ||| |||||||| ||||||||||||||||||    
T  37701622 gcatagttttaaaactcggactggtgatcaactcagtaa-gggtactgcgtcactgagtcattggtt 37701557  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 37683895 - 37683960
Alignment:
Q  213 gcatagttttaaaactcggatcggtgatcaacttgataaagggtactgggtcactgagtcattggtt 279  Q
    ||||||||||||||||||||   ||||||||||   ||| |||||||| ||||||||||||||||||    
T  37683895 gcatagttttaaaactcggactagtgatcaactcagtaa-gggtactgcgtcactgagtcattggtt 37683960  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 38336811 - 38336869
Alignment:
Q  14 ccatcacccatcctccatctcaccaccgccgttcaccccaccaccggatctactcaaat 72  Q
    |||||||||||||| |   |||||||||||||||||||||||| || | ||||||||||    
T  38336811 ccatcacccatccttctcttcaccaccgccgttcaccccaccatcgaaactactcaaat 38336869  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 21528944 - 21528877
Alignment:
Q  214 catagttttaaaactcggatcggtgatcaacttgataaagggtactgggtcactgagtcattggttcaa 282  Q
    ||||||||||||||||||| |||||||| ||| | |  ||||||||||||||| | |||||||||||||    
T  21528944 catagttttaaaactcggaccggtgatcgactcggt-cagggtactgggtcacagggtcattggttcaa 21528877  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 51229613 - 51229546
Alignment:
Q  214 catagttttaaaactcggatcggtgatcaacttgataaagggtactgggtcactgagtcattggttcaa 282  Q
    ||||||||||||||||||| |||||||| ||| | |  ||||||||||||||| | |||||||||||||    
T  51229613 catagttttaaaactcggaccggtgatcgactcggt-cagggtactgggtcacagggtcattggttcaa 51229546  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 43779849 - 43779796
Alignment:
Q  214 catagttttaaaactcggatcggtgatcaacttgataaagggtactgggtcactg 268  Q
    |||||||||||||||||||||||||||| ||| | | ||||||| ||||||||||    
T  43779849 catagttttaaaactcggatcggtgatcgactcggt-aagggtattgggtcactg 43779796  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 23023852 - 23023916
Alignment:
Q  213 gcatagttttaaaactcggatcggtgatcaacttgataaagggtactgggtcactgagtcattggt 278  Q
    |||||||||||||||||| | |||||||| ||| | | |||||||||| ||||||| |||||||||    
T  23023852 gcatagttttaaaactcgaaccggtgatcgactcggt-aagggtactgagtcactgggtcattggt 23023916  T

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