View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6690_low_16 (Length: 340)

Name: NF6690_low_16
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6690_low_16
NF6690_low_16
[»] chr1 (16 HSPs)
chr1 (1-151)||(2077856-2078006)
chr1 (3-146)||(10494369-10494507)
chr1 (240-319)||(2077677-2077756)
chr1 (3-135)||(14351675-14351803)
chr1 (6-133)||(25537288-25537411)
chr1 (57-148)||(29099165-29099251)
chr1 (56-138)||(8038966-8039043)
chr1 (3-85)||(11814222-11814304)
chr1 (58-148)||(27787171-27787256)
chr1 (240-319)||(14351460-14351540)
chr1 (240-318)||(10494612-10494691)
chr1 (106-148)||(15495643-15495685)
chr1 (7-76)||(15495562-15495631)
chr1 (105-148)||(26842360-26842403)
chr1 (214-248)||(2077759-2077793)
chr1 (57-135)||(47896453-47896526)
[»] chr5 (17 HSPs)
chr5 (1-149)||(42269241-42269384)
chr5 (1-151)||(40600318-40600463)
chr5 (3-102)||(26331548-26331647)
chr5 (3-102)||(26331890-26331989)
chr5 (7-148)||(34574574-34574710)
chr5 (240-318)||(42269060-42269139)
chr5 (240-319)||(40600138-40600218)
chr5 (3-135)||(12155790-12155918)
chr5 (4-99)||(42220996-42221091)
chr5 (106-148)||(40680641-40680683)
chr5 (240-319)||(12156054-12156134)
chr5 (69-148)||(23247164-23247238)
chr5 (69-147)||(30248271-30248344)
chr5 (3-76)||(40680556-40680629)
chr5 (106-135)||(11470498-11470527)
chr5 (251-319)||(34574457-34574526)
chr5 (254-293)||(26331693-26331733)
[»] chr7 (8 HSPs)
chr7 (3-149)||(43048128-43048269)
chr7 (3-103)||(24717588-24717688)
chr7 (3-103)||(31038670-31038770)
chr7 (240-319)||(43047946-43048026)
chr7 (45-135)||(21590980-21591065)
chr7 (240-319)||(24717821-24717901)
chr7 (4-73)||(7437040-7437109)
chr7 (60-148)||(32978849-32978932)
[»] chr2 (15 HSPs)
chr2 (3-149)||(9910148-9910289)
chr2 (3-135)||(38531853-38531981)
chr2 (27-133)||(6186758-6186858)
chr2 (34-148)||(40899831-40899940)
chr2 (34-135)||(14951332-14951428)
chr2 (240-319)||(6186540-6186620)
chr2 (240-319)||(14951106-14951186)
chr2 (3-103)||(28165375-28165475)
chr2 (65-149)||(33544035-33544114)
chr2 (1-76)||(6705188-6705263)
chr2 (16-103)||(27888362-27888448)
chr2 (106-148)||(6705275-6705317)
chr2 (240-313)||(38531634-38531707)
chr2 (212-318)||(9910352-9910470)
chr2 (58-148)||(1532929-1533014)
[»] scaffold0974 (2 HSPs)
scaffold0974 (3-149)||(2843-2980)
scaffold0974 (212-319)||(2661-2780)
[»] chr8 (7 HSPs)
chr8 (6-149)||(5514856-5514993)
chr8 (3-145)||(15050471-15050608)
chr8 (43-129)||(39580501-39580582)
chr8 (240-319)||(5515095-5515175)
chr8 (213-313)||(3763251-3763363)
chr8 (106-148)||(10181734-10181776)
chr8 (1-103)||(25142572-25142674)
[»] chr4 (11 HSPs)
chr4 (245-319)||(55728445-55728519)
chr4 (7-132)||(42678047-42678166)
chr4 (3-135)||(56092747-56092874)
chr4 (3-148)||(12130191-12130330)
chr4 (34-135)||(52635217-52635313)
chr4 (3-103)||(45872699-45872799)
chr4 (27-133)||(55728214-55728316)
chr4 (106-148)||(14440873-14440915)
chr4 (251-311)||(52635469-52635530)
chr4 (42-82)||(14440824-14440864)
chr4 (16-103)||(44496493-44496578)
[»] chr6 (12 HSPs)
chr6 (3-147)||(10772434-10772566)
chr6 (7-72)||(78460-78525)
chr6 (240-278)||(10772669-10772707)
chr6 (106-148)||(31026713-31026755)
chr6 (251-319)||(24842972-24843041)
chr6 (57-89)||(11366489-11366521)
chr6 (240-319)||(24350456-24350536)
chr6 (240-319)||(30845197-30845277)
chr6 (36-135)||(9566546-9566639)
chr6 (106-149)||(24842818-24842861)
chr6 (17-85)||(10670487-10670555)
chr6 (3-103)||(32748010-32748110)
[»] chr3 (7 HSPs)
chr3 (34-135)||(31625562-31625658)
chr3 (60-149)||(31698825-31698909)
chr3 (4-144)||(3460873-3461008)
chr3 (34-135)||(52984785-52984881)
chr3 (240-319)||(31699011-31699091)
chr3 (3-148)||(46743317-46743457)
chr3 (249-296)||(3460756-3460804)
[»] scaffold0083 (1 HSPs)
scaffold0083 (3-103)||(2715-2815)
[»] scaffold0027 (1 HSPs)
scaffold0027 (17-147)||(2483-2606)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 2078006 - 2077856
Alignment:
Q  1 ataaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  2078006 ataaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgtcgtatatatgcggaaaacccaaacaaacacccattcatcaaatac 2077907  T
Q  101 aaattaaacttctacaaacaaaccaaaaacacccttcactgagggcccctg 151  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2077906 aaattaaacttctacaaacaaaccaaaaacacccttcactaagggcccctg 2077856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 10494369 - 10494507
Alignment:
Q  3 aaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaa 102  Q
    ||||||||  |||||||||||||||| ||| ||||| |||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||      
T  10494369 aaggaatgtctggctaggagacttaaatagcaacatacaaaggaaaagtgtgttgtatatatgcagaacacccaaacaaacactcatacatcaaatac-- 10494466  T
Q  103 attaaacttctacaaacaaaccaaaaacacccttcactgagggc 146  Q
       |||||||||||||||||||||||| ||||| |||| |||||    
T  10494467 ---aaacttctacaaacaaaccaaaaataccctccactaagggc 10494507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 2077756 - 2077677
Alignment:
Q  240 tgcaaaacccatccaaaataatcatcaaacctaccaaaactcgtgtaaccgcactttacttttcttctgcagttcagcgc 319  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2077756 tgcaaaacccatccaaaataatcatcaaacctaccaaaactcctgtaaccgcactttacttttcttctgcagttcagcgc 2077677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 14351803 - 14351675
Alignment:
Q  3 aaggaatgcttggctaggagacttaa-gtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaataca 101  Q
    |||||||||| | ||||||  ||||| |||| ||||| |||||||||| ||||| ||||||||||||||||||||||||||||  ||| |||||||||      
T  14351803 aaggaatgctagactaggaatcttaaagtagcaacatacaaaggaaaagtgtgtcgtatatatgcggaacacccaaacaaacaaccatacatcaaata-- 14351706  T
Q  102 aattaaacttctacaaacaaaccaaaaacaccct 135  Q
       ||||||||||||||||||| ||||| |||||    
T  14351705 ---taaacttctacaaacaaactaaaaataccct 14351675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 133
Target Start/End: Original strand, 25537288 - 25537411
Alignment:
Q  6 gaatgcttggctaggagacttaagtagg-aacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaaat 104  Q
    ||||||| |||||||||||||||  |   ||||| || ||||||| ||||| ||||||||||||||||| ||||||||||| |||  |||||||||        
T  25537288 gaatgctaggctaggagacttaaaaaaacaacatacacaggaaaagtgtgtcgtatatatgcggaacacacaaacaaacacccatgtatcaaatac---- 25537383  T
Q  105 taaacttctacaaacaaaccaaaaacacc 133  Q
     ||||||||||||||||||||||||||||    
T  25537384 -aaacttctacaaacaaaccaaaaacacc 25537411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 29099165 - 29099251
Alignment:
Q  57 gtatatatgcggaacacccaaacaaacactcattcatcaaatacaaattaaacttctacaaacaaaccaaaaacacccttcactgagggccc 148  Q
    ||||||||||||||||   ||||||||||||||  ||||||||||||     ||||||| ||||||||||||||||||| ||||||||||||    
T  29099165 gtatatatgcggaacatataaacaaacactcatgtatcaaatacaaa-----cttctacgaacaaaccaaaaacaccctccactgagggccc 29099251  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 8038966 - 8039043
Alignment:
Q  56 tgtatatatgcggaacacccaaacaaacactcattcatcaaatacaaattaaacttctacaaacaaaccaaaaacacccttca 138  Q
    |||||||||||||||||||||||||||||||||| |||||||||     ||||||| ||| | || |||||||||||||||||    
T  8038966 tgtatatatgcggaacacccaaacaaacactcatgcatcaaata-----taaacttttacgagcagaccaaaaacacccttca 8039043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 11814222 - 11814304
Alignment:
Q  3 aaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacac 85  Q
    |||||| ||||||||||||||||||| ||| ||||| |||||||| | ||||   |||||||||| |||||||||||||||||    
T  11814222 aaggaaagcttggctaggagacttaaatagcaacatacaaaggaacattgtgccttatatatgcgaaacacccaaacaaacac 11814304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 27787256 - 27787171
Alignment:
Q  58 tatatatgcggaacacccaaacaaacactcattcatcaaatacaaattaaacttctacaaacaaaccaaaaacacccttcactgagggccc 148  Q
    |||||||||||||||||||||||||||  |||  ||||||||||||     ||||||||| |||| |||||||||||| ||||||||||||    
T  27787256 tatatatgcggaacacccaaacaaacagccatgtatcaaatacaaa-----cttctacaagcaaatcaaaaacaccctccactgagggccc 27787171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 14351540 - 14351460
Alignment:
Q  240 tgcaaaacccatccaaaataatcatcaaacctacc-aaaactcgtgtaaccgcactttacttttcttctgcagttcagcgc 319  Q
    |||||||||| |||||||||| ||||||||||||| |||||||| |||| ||||| || ||| ||||| |||||| |||||    
T  14351540 tgcaaaacccctccaaaataaccatcaaacctaccaaaaactcgcgtaatcgcacattgcttctcttcagcagttgagcgc 14351460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 10494612 - 10494691
Alignment:
Q  240 tgcaaaacccatccaaaataatcatcaaacctaccaaaact-cgtgtaaccgcactttacttttcttctgcagttcagcg 318  Q
    |||||||||| |  ||||||| ||||||||||||||||| | ||||||||||||||||  || |||||||||||| ||||    
T  10494612 tgcaaaacccctataaaataaccatcaaacctaccaaaaatccgtgtaaccgcactttctttctcttctgcagttgagcg 10494691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 15495643 - 15495685
Alignment:
Q  106 aaacttctacaaacaaaccaaaaacacccttcactgagggccc 148  Q
    ||||||||||||||||| |||||||||||| ||||||||||||    
T  15495643 aaacttctacaaacaaatcaaaaacaccctccactgagggccc 15495685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 15495562 - 15495631
Alignment:
Q  7 aatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacaccca 76  Q
    |||||| |||||||||||||||  || ||||| |||||||||| ||||   |||||||||||||||||||    
T  15495562 aatgctaggctaggagacttaaaaagcaacatacaaaggaaaagtgtgccttatatatgcggaacaccca 15495631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 26842403 - 26842360
Alignment:
Q  105 taaacttctacaaacaaaccaaaaacacccttcactgagggccc 148  Q
    |||||||||||||||||||||||||||||||  || ||||||||    
T  26842403 taaacttctacaaacaaaccaaaaacaccctctacagagggccc 26842360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 2077793 - 2077759
Alignment:
Q  214 ctgagcaatagcagaaacaagtcttgtgcaaaacc 248  Q
    ||||||||||||| |||||||||||||||||||||    
T  2077793 ctgagcaatagcataaacaagtcttgtgcaaaacc 2077759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 47896453 - 47896526
Alignment:
Q  57 gtatatatgcggaacacccaaacaaacactcattcatcaaatacaaattaaacttctacaaacaaaccaaaaacaccct 135  Q
    |||||||||||||||| |||||||||||| |||  ||||||||     ||||||| ||| | |||||||||||||||||    
T  47896453 gtatatatgcggaacatccaaacaaacacccatgtatcaaata-----taaacttttacgagcaaaccaaaaacaccct 47896526  T

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Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 42269384 - 42269241
Alignment:
Q  1 ataaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatac 100  Q
    ||||||||||||| |||||||||||||||||||||||| || || |||| ||||||||||||||||||||||| |||||||||| |||| ||||||||||    
T  42269384 ataaggaatgcttagctaggagacttaagtaggaacatacagagaaaaagtgtgttgtatatatgcggaacactcaaacaaacattcatgcatcaaatac 42269285  T
Q  101 aaattaaacttctacaaacaaaccaaaaacacccttcactgagggcccc 149  Q
         |||||||||||||||||||||||||||||| || |||| |||||    
T  42269284 -----aaacttctacaaacaaaccaaaaacaccctccattgagagcccc 42269241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 40600463 - 40600318
Alignment:
Q  1 ataaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatac 100  Q
    |||||||||| |||| ||||||||||||||||||| || |||||||||| |||| ||| |||||| ||||||||||||||||||||||| ||||||||||    
T  40600463 ataaggaatgtttggttaggagacttaagtaggaatatacaaaggaaaagtgtggtgtgtatatgtggaacacccaaacaaacactcatgcatcaaatac 40600364  T
Q  101 aaattaaacttctacaaacaaaccaaaaacacccttcactgagggcccctg 151  Q
         ||||||| |||||||||||||||||||||| ||| |||||||||||    
T  40600363 -----aaacttcaacaaacaaaccaaaaacaccctccaccgagggcccctg 40600318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 26331647 - 26331548
Alignment:
Q  3 aaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaa 102  Q
    |||||||||| |||||||||| ||||  || ||||| |||||||||| ||| | |||||||||||||||| ||||||||||||||||  |||||||||||    
T  26331647 aaggaatgctaggctaggagatttaaaaagcaacatacaaaggaaaagtgtttcgtatatatgcggaacatccaaacaaacactcatgtatcaaatacaa 26331548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 26331989 - 26331890
Alignment:
Q  3 aaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaa 102  Q
    |||||||||| |||||||||| ||||  || ||||| |||||||||| ||| | |||||||||||||||| ||||||||||||||||  |||||||||||    
T  26331989 aaggaatgctaggctaggagatttaaaaagcaacatacaaaggaaaagtgtttcgtatatatgcggaacatccaaacaaacactcatgtatcaaatacaa 26331890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 34574710 - 34574574
Alignment:
Q  7 aatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaaatta 106  Q
    |||||| | |||||| |||||| ||| ||||| ||||| |||| ||||| |||||||  |||||||| ||| ||||||||||| |||||||| |     |    
T  34574710 aatgctagactaggatacttaaatagcaacatacaaagaaaaagtgtgtcgtatatacacggaacactcaagcaaacactcatacatcaaatgc-----a 34574616  T
Q  107 aacttctacaaacaaaccaaaaacacccttcactgagggccc 148  Q
    |||||||| |||||||||||||||| ||| ||||||||||||    
T  34574615 aacttctaaaaacaaaccaaaaacaacctccactgagggccc 34574574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 42269139 - 42269060
Alignment:
Q  240 tgcaaaacccatccaaaataatcatcaaacctacc-aaaactcgtgtaaccgcactttacttttcttctgcagttcagcg 318  Q
    ||||||||||||||||||||| |||||| |||||| |||||||| ||||||||||||| ||| |||||||||||| ||||    
T  42269139 tgcaaaacccatccaaaataaccatcaatcctaccaaaaactcgggtaaccgcactttgcttctcttctgcagttgagcg 42269060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 40600218 - 40600138
Alignment:
Q  240 tgcaaaacccatccaaaataatcatcaaacctacc-aaaactcgtgtaaccgcactttacttttcttctgcagttcagcgc 319  Q
    |||||||||| |||||||||| ||||||||||||| ||||||||| |||| ||||||| ||| |||||||||||| |||||    
T  40600218 tgcaaaacccgtccaaaataaccatcaaacctaccaaaaactcgtataactgcactttgcttctcttctgcagttgagcgc 40600138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 12155790 - 12155918
Alignment:
Q  3 aaggaatgcttggctaggagacttaa-gtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaataca 101  Q
    |||||||||| | ||||||  ||||| |||| ||||| ||||| |||| || |  |||| |||||||||||| |||||||||| |||| |||||||||      
T  12155790 aaggaatgctagactaggaatcttaaagtagcaacatacaaagaaaaagtgcgccgtatgtatgcggaacactcaaacaaacaatcatacatcaaata-- 12155887  T
Q  102 aattaaacttctacaaacaaaccaaaaacaccct 135  Q
       ||||||||||||||||||||||||| |||||    
T  12155888 ---taaacttctacaaacaaaccaaaaataccct 12155918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 42220996 - 42221091
Alignment:
Q  4 aggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaata 99  Q
    ||||| ||| ||||||||||||||| ||| ||||| |||||||||| |||    ||| ||||||||||||  |||||||||||||| |||||||||    
T  42220996 aggaaggctaggctaggagacttaaatagcaacatacaaaggaaaaatgtaccatatgtatgcggaacactaaaacaaacactcatacatcaaata 42221091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 40680641 - 40680683
Alignment:
Q  106 aaacttctacaaacaaaccaaaaacacccttcactgagggccc 148  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  40680641 aaacttctacaaacaaaccaaaaacaccctccactgagggccc 40680683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 12156054 - 12156134
Alignment:
Q  240 tgcaaaacccatccaaaataatcatcaaacctacc-aaaactcgtgtaaccgcactttacttttcttctgcagttcagcgc 319  Q
    |||||||||| |||||||||| ||||||||||||| |||||||| |||| ||||| || ||| ||||| |||||| |||||    
T  12156054 tgcaaaacccctccaaaataaccatcaaacctaccaaaaactcgcgtaatcgcaccttgcttctcttcagcagttgagcgc 12156134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 23247238 - 23247164
Alignment:
Q  69 aacacccaaacaaacactcattcatcaaatacaaattaaacttctacaaacaaaccaaaaacacccttcactgagggccc 148  Q
    ||||| ||||||||||||||| |||||||||||||     | ||||||||||||||||||||| ||| ||| ||||||||    
T  23247238 aacactcaaacaaacactcatacatcaaatacaaa-----cgtctacaaacaaaccaaaaacatcctccaccgagggccc 23247164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 30248271 - 30248344
Alignment:
Q  69 aacacccaaacaaacactcattcatcaaatacaaattaaacttctacaaacaaaccaaaaacacccttcactgagggcc 147  Q
    ||||| |||||||||||||||  ||||||||||||     | ||||||||||||||||||||||||| |||| ||||||    
T  30248271 aacactcaaacaaacactcatatatcaaatacaaa-----cgtctacaaacaaaccaaaaacaccctccactaagggcc 30248344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 40680556 - 40680629
Alignment:
Q  3 aaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacaccca 76  Q
    |||||||||| || || |||||||||  || ||||| |||||||||| ||||  ||||||||||||||||||||    
T  40680556 aaggaatgctaggttaagagacttaaaaagcaacatacaaaggaaaagtgtgccgtatatatgcggaacaccca 40680629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 135
Target Start/End: Original strand, 11470498 - 11470527
Alignment:
Q  106 aaacttctacaaacaaaccaaaaacaccct 135  Q
    ||||||||||||||||||||||||||||||    
T  11470498 aaacttctacaaacaaaccaaaaacaccct 11470527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 34574526 - 34574457
Alignment:
Q  251 tccaaaataatcatcaaacctacc-aaaactcgtgtaaccgcactttacttttcttctgcagttcagcgc 319  Q
    |||||||||| ||||||||||||| |||| ||||| |||||||| || ||| |||||| ||||| |||||    
T  34574526 tccaaaataaccatcaaacctaccaaaaaatcgtgcaaccgcaccttgcttctcttctacagttgagcgc 34574457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 26331733 - 26331693
Alignment:
Q  254 aaaataatcatcaaacctacc-aaaactcgtgtaaccgcac 293  Q
    ||||||||||||||||||||| ||||||| |||||||||||    
T  26331733 aaaataatcatcaaacctaccaaaaactcatgtaaccgcac 26331693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 43048269 - 43048128
Alignment:
Q  3 aaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaa 102  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||| ||||| |||||||||  |||||| |||||||||| |||| ||||||||||      
T  43048269 aaggaatgcttggttaggagacttaagtaggaacatacaaaggaaaaatgtgtcgtatatatgtagaacactcaaacaaacaatcatgcatcaaatac-- 43048172  T
Q  103 attaaacttctacaaacaaaccaaaaacacccttcactgagggcccc 149  Q
       ||||||||||||||||||||||||||||||  ||||||||||||    
T  43048171 ---aaacttctacaaacaaaccaaaaacaccctctactgagggcccc 43048128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 24717588 - 24717688
Alignment:
Q  3 aaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaa 102  Q
    ||||||||||| |||| |||||||||||||||| || ||||| |||| |||| ||||||||||||||||||||||||||||| |||| ||||||||||||    
T  24717588 aaggaatgcttagctatgagacttaagtaggaagatacaaagaaaaagtgtgatgtatatatgcggaacacccaaacaaacattcatgcatcaaatacaa 24717687  T
Q  103 a 103  Q
    |    
T  24717688 a 24717688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 31038670 - 31038770
Alignment:
Q  3 aaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaa 102  Q
    |||||||||| ||||| || |||||| ||| ||||| |||||||||| ||||| |||||||  |||||||| ||||||||||||||| |||||||| |||    
T  31038670 aaggaatgctaggctaagatacttaaatagcaacatacaaaggaaaagtgtgtcgtatatacacggaacactcaaacaaacactcatacatcaaatgcaa 31038769  T
Q  103 a 103  Q
    |    
T  31038770 a 31038770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 43048026 - 43047946
Alignment:
Q  240 tgcaaaacccatccaaaataatcatcaaacctaccaaaactc-gtgtaaccgcactttacttttcttctgcagttcagcgc 319  Q
    ||||||| ||||||||||||| ||||||||||||||||| || |||||||||||||||  || |||||||||||| |||||    
T  43048026 tgcaaaatccatccaaaataaccatcaaacctaccaaaaatctgtgtaaccgcactttgtttctcttctgcagttgagcgc 43047946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 21591065 - 21590980
Alignment:
Q  45 gaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaaattaaacttctacaaacaaaccaaaaacaccct 135  Q
    ||||| ||||| |||||||||| ||||||||||||||||   |||  |||||||||     |||||| |||||||||||||||||||||||    
T  21591065 gaaaagtgtgtcgtatatatgcagaacacccaaacaaacctccatgtatcaaatac-----aaacttttacaaacaaaccaaaaacaccct 21590980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 24717821 - 24717901
Alignment:
Q  240 tgcaaaacccatccaaaataatcatcaaacctaccaaaactcgtg-taaccgcactttacttttcttctgcagttcagcgc 319  Q
    ||||||||||||||||||||| |||||| ||||||||||  |  | |||||||||||| ||| |||| ||||||| |||||    
T  24717821 tgcaaaacccatccaaaataaccatcaatcctaccaaaaaaccaggtaaccgcactttgcttctcttttgcagttgagcgc 24717901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 7437040 - 7437109
Alignment:
Q  4 aggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacac 73  Q
    |||| |||| ||||||||||||||| ||| ||||| ||||| |||| |||   |||||||||||||||||    
T  7437040 aggattgctaggctaggagacttaaatagcaacatacaaagaaaaagtgtaccgtatatatgcggaacac 7437109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 32978849 - 32978932
Alignment:
Q  60 tatatgcggaacacccaaacaaacactcattcatcaaatacaaattaaacttctacaaacaaaccaaaaacacccttcactgagggccc 148  Q
    |||||||||| || ||||||||||||||||  |||||| ||     |||||||||||| ||||  ||||||||||| ||||||| ||||    
T  32978849 tatatgcggatcatccaaacaaacactcatgtatcaaaaac-----aaacttctacaagcaaataaaaaacaccctccactgagcgccc 32978932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 9910148 - 9910289
Alignment:
Q  3 aaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaa 102  Q
    |||||||| ||||||| ||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||| |||   |||||||       
T  9910148 aaggaatgtttggctatgagacttaagtaggaacatacaaaggaaaagtgtgtcgtatatatgcggaacatccaaacaaacacccatgattcaaata--- 9910244  T
Q  103 attaaacttctacaaacaaaccaaaaacacccttcactgagggcccc 149  Q
      |||||||||||| |||||||||||||||||| |||||| ||||||    
T  9910245 --taaacttctacatacaaaccaaaaacaccctccactgaaggcccc 9910289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 38531981 - 38531853
Alignment:
Q  3 aaggaatgcttggctaggagacttaa-gtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaataca 101  Q
    |||||| ||| | ||||||| ||||| |||| ||||| ||||| |||| |||||||||||||| ||||||| |||||||||||||||| ||||||||||     
T  38531981 aaggaacgctagactaggagtcttaaagtagcaacatacaaagaaaaagtgtgttgtatatatacggaacatccaaacaaacactcatacatcaaatac- 38531883  T
Q  102 aattaaacttctacaaacaaaccaaaaacaccct 135  Q
        ||||||||||| | ||||||||||||||||    
T  38531882 ----aaacttctacatataaaccaaaaacaccct 38531853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 6186858 - 6186758
Alignment:
Q  27 aagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaaattaaacttctacaaacaaaccaa 126  Q
    |||||| ||||| |||| ||||| |||||  |||||||||||| |||||||||||||| ||||||||||||||     ||||||||||||||||||||||    
T  6186858 aagtagaaacatacaaatgaaaagtgtgta-tatatatgcggagcacccaaacaaacaatcattcatcaaata-----taaacttctacaaacaaaccaa 6186765  T
Q  127 aaacacc 133  Q
    |||||||    
T  6186764 aaacacc 6186758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 40899831 - 40899940
Alignment:
Q  34 aacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaaattaaacttctacaaacaaaccaaaaacacc 133  Q
    ||||| |||||||||| ||||| |||||||||| |||||| ||||||||| | |||  ||||||||||||     ||||||||||||||||||||||| |    
T  40899831 aacatacaaaggaaaagtgtgtcgtatatatgcagaacactcaaacaaacccccatgtatcaaatacaaa-----cttctacaaacaaaccaaaaacatc 40899925  T
Q  134 cttcactgagggccc 148  Q
    || ||||||||||||    
T  40899926 ctccactgagggccc 40899940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 14951428 - 14951332
Alignment:
Q  34 aacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaaattaaacttctacaaacaaaccaaaaacacc 133  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||||||||||  ||| |||||||||     ||||||||||| |||||||| ||||||||    
T  14951428 aacatacaaaggaaaagtgtgtcgtatatatgcggaacacccaaacaaacaaccatacatcaaata-----taaacttctacgaacaaaccgaaaacacc 14951334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 6186620 - 6186540
Alignment:
Q  240 tgcaaaacccatccaaaataatcatcaaacctaccaaaa-ctcgtgtaaccgcactttacttttcttctgcagttcagcgc 319  Q
    |||||||||| | ||||||||| ||||||| |||||||| ||||||||| |||||||||||| |||||||||||| |||||    
T  6186620 tgcaaaaccccttcaaaataattatcaaacttaccaaaaactcgtgtaatcgcactttacttctcttctgcagttgagcgc 6186540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 14951186 - 14951106
Alignment:
Q  240 tgcaaaacccatccaaaataatcatcaaacctacc-aaaactcgtgtaaccgcactttacttttcttctgcagttcagcgc 319  Q
    |||||||||| |||||||||| ||||||||||||| ||||||||||||| ||||| || ||| |||||||||||| |||||    
T  14951186 tgcaaaacccctccaaaataaccatcaaacctaccaaaaactcgtgtaatcgcacattgcttctcttctgcagttgagcgc 14951106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 28165475 - 28165375
Alignment:
Q  3 aaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaa 102  Q
    |||||||||| ||||| || |||||| ||| |||||  ||||||||| ||||| |||||||  |||||||| ||||||||||||||| |||||||| |||    
T  28165475 aaggaatgctaggctaagatacttaaatagcaacatataaaggaaaagtgtgtcgtatatacacggaacactcaaacaaacactcatacatcaaatgcaa 28165376  T
Q  103 a 103  Q
    |    
T  28165375 a 28165375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 33544035 - 33544114
Alignment:
Q  65 gcggaacacccaaacaaacactcattcatcaaatacaaattaaacttctacaaacaaaccaaaaacacccttcactgagggcccc 149  Q
    ||||||||| ||||||||||| ||| |||||||||||||     | ||||||||||||||||||||||||| |||||||||||||    
T  33544035 gcggaacactcaaacaaacacccatacatcaaatacaaa-----cgtctacaaacaaaccaaaaacaccctccactgagggcccc 33544114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 6705188 - 6705263
Alignment:
Q  1 ataaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacaccca 76  Q
    |||||||||||| |||||||||||||||  |  ||||| |||||||||| ||||| ||||||||||||||||||||    
T  6705188 ataaggaatgctaggctaggagacttaaaaaacaacatacaaaggaaaagtgtgtcgtatatatgcggaacaccca 6705263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 27888362 - 27888448
Alignment:
Q  16 ctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaaa 103  Q
    |||||||| ||||  || ||||| |||||||||| |||   |||||||||||||||||||||||||||||||||  ||||||||||||    
T  27888362 ctaggagaattaaagagcaacatacaaaggaaaagtgtcc-gtatatatgcggaacacccaaacaaacactcatgtatcaaatacaaa 27888448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 6705275 - 6705317
Alignment:
Q  106 aaacttctacaaacaaaccaaaaacacccttcactgagggccc 148  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  6705275 aaacttctacaaacaaaccaaaaacaccctccactgagggccc 6705317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 313
Target Start/End: Complemental strand, 38531707 - 38531634
Alignment:
Q  240 tgcaaaacccatccaaaataatcatcaaacctaccaaaa-ctcgtgtaaccgcactttacttttcttctgcagtt 313  Q
    |||||||||| ||||||| || ||||||||||||||||| | ||||||||||||| || ||||||||||||||||    
T  38531707 tgcaaaaccc-tccaaaagaaccatcaaacctaccaaaaacccgtgtaaccgcaccttgcttttcttctgcagtt 38531634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 318
Target Start/End: Original strand, 9910352 - 9910470
Alignment:
Q  212 gcctgagcaatagcagaaacaagtcttgtg-----------caaaacccatccaaaataatcatcaaacctaccaaaa-ctcgtgtaaccgcactttact 299  Q
    ||||||||||||||||||||||||||||||           ||||||||||| |||||||  ||||| |||||||||| |||||||||||| |||||  |    
T  9910352 gcctgagcaatagcagaaacaagtcttgtgacaaaccgttgcaaaacccatcaaaaataactatcaatcctaccaaaaactcgtgtaaccgtactttgtt 9910451  T
Q  300 tttcttctgcagttcagcg 318  Q
    | |||||||||||| ||||    
T  9910452 tctcttctgcagttgagcg 9910470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 1532929 - 1533014
Alignment:
Q  58 tatatatgcggaacacccaaacaaacactcattcatcaaatacaaattaaacttctacaaacaaaccaaaaacacccttcactgagggccc 148  Q
    ||||||||||||||| |||||||| ||  |||  |||||||||     ||||||||||||  |||||||||||||||| |||| |||||||    
T  1532929 tatatatgcggaacatccaaacaatcatccatgtatcaaatac-----aaacttctacaagtaaaccaaaaacaccctccactaagggccc 1533014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 2980 - 2843
Alignment:
Q  3 aaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaa 102  Q
    |||||||| |||||||||||||||||||||||||||  ||| ||||| ||||| ||||||||| ||||||||||    ||||||||| ||||||||||      
T  2980 aaggaatgtttggctaggagacttaagtaggaacatataaaagaaaagtgtgtcgtatatatgtggaacaccca----aacactcatgcatcaaatac-- 2887  T
Q  103 attaaacttctacaaacaaaccaaaaacacccttcactgagggcccc 149  Q
       ||||||||||||||||||| |||||||||| |||| ||| ||||    
T  2886 ---aaacttctacaaacaaacctaaaacaccctccactaaggccccc 2843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 319
Target Start/End: Complemental strand, 2780 - 2661
Alignment:
Q  212 gcctgagcaatagcagaaacaagtcttgtgcaaaacc-----------catccaaaataatcatcaaacctaccaaaa-ctcgtgtaaccgcactttact 299  Q
    ||||||||||||||||||||||||||||||| |||||           |||| |||||||||||||| |||||||||| ||| |||||||||||||| ||    
T  2780 gcctgagcaatagcagaaacaagtcttgtgccaaaccgttgcaaatcccatctaaaataatcatcaatcctaccaaaaactcatgtaaccgcactttgct 2681  T
Q  300 tttcttctgcagttcagcgc 319  Q
    | ||||||||||||||||||    
T  2680 tctcttctgcagttcagcgc 2661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 149
Target Start/End: Original strand, 5514856 - 5514993
Alignment:
Q  6 gaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaaatt 105  Q
    ||||||||  ||||||||||||||||||||||| ||||| || | ||||| |||||||||||||||||||||||||| |  ||| | ||||| ||         
T  5514856 gaatgcttaactaggagacttaagtaggaacatacaaagaaagagtgtgtcgtatatatgcggaacacccaaacaaagatccatgcgtcaaa-ac----- 5514949  T
Q  106 aaacttctacaaacaaaccaaaaacacccttcactgagggcccc 149  Q
    ||||||||||||| |||||||||||||||| |||||||||||||    
T  5514950 aaacttctacaaataaaccaaaaacaccctccactgagggcccc 5514993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 15050608 - 15050471
Alignment:
Q  3 aaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaa 102  Q
    |||||||||| |||||||||| ||||  |  ||||| || ||||||| ||||  ||||||||||||||||| ||||||||||| |||  |||||||||      
T  15050608 aaggaatgctaggctaggagaattaaaaaacaacatacacaggaaaagtgtgccgtatatatgcggaacacacaaacaaacacccatgtatcaaatac-- 15050511  T
Q  103 attaaacttctacaaacaaaccaaaaacacccttcactgaggg 145  Q
       |||||||||||||||||||||||||||||||||| |||||    
T  15050510 ---aaacttctacaaacaaaccaaaaacacccttcacggaggg 15050471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 39580582 - 39580501
Alignment:
Q  43 aggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaaattaaacttctacaaacaaaccaaaaa 129  Q
    ||||||| ||||| ||||||||||||||||| |||||||||||||||  |||||||||     |||||||||| |||||||||||||    
T  39580582 aggaaaagtgtgtcgtatatatgcggaacacacaaacaaacactcatgtatcaaatac-----aaacttctactaacaaaccaaaaa 39580501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 5515095 - 5515175
Alignment:
Q  240 tgcaaaacccatccaaaataatcatcaaacctacc-aaaactcgtgtaaccgcactttacttttcttctgcagttcagcgc 319  Q
    ||||||| ||||||||||||| |||||| |||||| ||||| || ||||||||||||| ||| |||||||||||| |||||    
T  5515095 tgcaaaatccatccaaaataaccatcaatcctaccaaaaacccgggtaaccgcactttgcttctcttctgcagttgagcgc 5515175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 313
Target Start/End: Complemental strand, 3763363 - 3763251
Alignment:
Q  213 cctgagcaatagcagaaacaagtcttg-----------tgcaaaacccatccaaaataatcatcaaacctacc-aaaactcgtgtaaccgcactttactt 300  Q
    |||||||||||||||||||||||||||           |||||||| ||||||||||||||||||| |||||| |||||  || |||| ||||||| |||    
T  3763363 cctgagcaatagcagaaacaagtcttgtgccaaaccattgcaaaactcatccaaaataatcatcaatcctaccaaaaacctgtataactgcacttttctt 3763264  T
Q  301 ttcttctgcagtt 313  Q
     ||||||||||||    
T  3763263 ctcttctgcagtt 3763251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 10181734 - 10181776
Alignment:
Q  106 aaacttctacaaacaaaccaaaaacacccttcactgagggccc 148  Q
    |||||||||||| ||||||||||||||||| ||| ||||||||    
T  10181734 aaacttctacaagcaaaccaaaaacaccctccaccgagggccc 10181776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 25142572 - 25142674
Alignment:
Q  1 ataaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatac 100  Q
    |||||||||||| | ||| || |||||| ||  ||||  |||||||||| ||||| ||||||   |||||||| ||||||||||||||| ||| |||| |    
T  25142572 ataaggaatgctagactaagatacttaaataacaacaaacaaaggaaaagtgtgtcgtatatccacggaacactcaaacaaacactcatacattaaatgc 25142671  T
Q  101 aaa 103  Q
    |||    
T  25142672 aaa 25142674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 245 - 319
Target Start/End: Original strand, 55728445 - 55728519
Alignment:
Q  245 aacccatccaaaataatcatcaaacctaccaaaactcgtgtaaccgcactttacttttcttctgcagttcagcgc 319  Q
    ||||| |||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||    
T  55728445 aacccctccaaaataaccatcaaacctaccaaaactcgtgtaatcgcactttgcttttcttctgcagttgagcgc 55728519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 42678166 - 42678047
Alignment:
Q  7 aatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaaatta 106  Q
    |||||| |||||||||||||||  || |||||  ||||||||| ||| | ||||||||| |||||||||||||||||| |||| ||||||||||     |    
T  42678166 aatgctaggctaggagacttaaaaagtaacataaaaaggaaaagtgtctcgtatatatgtggaacacccaaacaaaca-tcatgcatcaaatac-----a 42678073  T
Q  107 aacttctacaaacaaaccaaaaacac 132  Q
    ||||||||||||||||||||||||||    
T  42678072 aacttctacaaacaaaccaaaaacac 42678047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 56092874 - 56092747
Alignment:
Q  3 aaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaa 102  Q
    |||||||||| |||||||||| ||||  |  || || || ||||||| ||||| ||||||||||||||||| ||||||||||  |||  |||||||||      
T  56092874 aaggaatgctaggctaggagaattaaaaaacaatatacacaggaaaagtgtgtcgtatatatgcggaacacacaaacaaacatccatgtatcaaatac-- 56092777  T
Q  103 attaaacttctacaaacaaaccaaaaacaccct 135  Q
       ||||||||||||||||||||||||||||||    
T  56092776 ---aaacttctacaaacaaaccaaaaacaccct 56092747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 12130191 - 12130330
Alignment:
Q  3 aaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaa 102  Q
    |||||||||| |||||||||||||||  || | ||| || | ||||| |||| |||||||||||||||||||||||||||||| |||  | ||||||       
T  12130191 aaggaatgctaggctaggagacttaaaaagcatcatacagaagaaaagtgtgatgtatatatgcggaacacccaaacaaacacccatgta-caaata--- 12130286  T
Q  103 attaaacttctacaaacaaaccaaaaacacccttcactgagggccc 148  Q
       |||||| |||||||||||||||||||| || ||||||| ||||    
T  12130287 --gaaacttttacaaacaaaccaaaaacactctccactgagagccc 12130330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 135
Target Start/End: Original strand, 52635217 - 52635313
Alignment:
Q  34 aacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaaattaaacttctacaaacaaaccaaaaacacc 133  Q
    ||||| ||||| |||| ||||| || |||||||||||||||||||||||||  ||| |||||||||     |||||||||| ||||||||||||||||||    
T  52635217 aacatacaaagaaaaagtgtgtcgtgtatatgcggaacacccaaacaaacaaccatacatcaaata-----taaacttctagaaacaaaccaaaaacacc 52635311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 45872699 - 45872799
Alignment:
Q  3 aaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaa 102  Q
    ||||||| || ||||| |||||||||  |  ||||| ||||| |||| |||   ||||||||||||||||||||||||||||||||   |||||||||||    
T  45872699 aaggaatactaggctatgagacttaaaaaacaacatacaaagaaaaagtgttccgtatatatgcggaacacccaaacaaacactcacatatcaaatacaa 45872798  T
Q  103 a 103  Q
    |    
T  45872799 a 45872799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 133
Target Start/End: Original strand, 55728214 - 55728316
Alignment:
Q  27 aagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaac-actcattcatcaaatacaaattaaacttctacaaacaaacca 125  Q
    |||||| ||||| |||||||||  ||| | || |||||||||||| ||||||||||| || ||| |||||||||     ||||||||||||||||||| |    
T  55728214 aagtagcaacatacaaaggaaaggtgtatcgtgtatatgcggaacgcccaaacaaacaacccatacatcaaata-----taaacttctacaaacaaacta 55728308  T
Q  126 aaaacacc 133  Q
    ||||||||    
T  55728309 aaaacacc 55728316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 14440873 - 14440915
Alignment:
Q  106 aaacttctacaaacaaaccaaaaacacccttcactgagggccc 148  Q
    |||||||||||||||||||||||||||||| ||  ||||||||    
T  14440873 aaacttctacaaacaaaccaaaaacaccctccatggagggccc 14440915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 52635469 - 52635530
Alignment:
Q  251 tccaaaataatcatcaaacctacc-aaaactcgtgtaaccgcactttacttttcttctgcag 311  Q
    |||||||||| ||||||||||||| ||||||||||||| | ||| || ||| ||||||||||    
T  52635469 tccaaaataaccatcaaacctaccaaaaactcgtgtaatcacacattgcttctcttctgcag 52635530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 14440824 - 14440864
Alignment:
Q  42 aaggaaaactgtgttgtatatatgcggaacacccaaacaaa 82  Q
    |||||||| | ||| ||||||||||||||||||||||||||    
T  14440824 aaggaaaagtttgtcgtatatatgcggaacacccaaacaaa 14440864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 44496493 - 44496578
Alignment:
Q  16 ctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaaa 103  Q
    ||||||||||||| ||| ||||| ||||| |||| ||||| |  |||| ||||||||| |||||| |||| |||  ||||||||||||    
T  44496493 ctaggagacttaaatagcaacatacaaagaaaaagtgtgtcg--tatacgcggaacactcaaacagacacccatatatcaaatacaaa 44496578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 147
Target Start/End: Original strand, 10772434 - 10772566
Alignment:
Q  3 aaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaa 102  Q
    |||||||||||||||||||||||     |||||| | |||||||||| ||||  ||||||||||||||||| ||  ||||||||||| || |||||||||    
T  10772434 aaggaatgcttggctaggagact-----aggaacgtacaaaggaaaagtgtgccgtatatatgcggaacacaca--caaacactcatgcagcaaatacaa 10772526  T
Q  103 attaaacttctacaaacaaaccaaaaacacccttcactgagggcc 147  Q
    |     |||||||||| |||||||||||||||| |||||||||||    
T  10772527 a-----cttctacaaataaaccaaaaacaccctccactgagggcc 10772566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 78460 - 78525
Alignment:
Q  7 aatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaaca 72  Q
    |||||||||||||||||||||| ||||||||| |||||||||| || |  ||||||||||||||||    
T  78460 aatgcttggctaggagacttaaataggaacatacaaaggaaaagtgagccgtatatatgcggaaca 78525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 10772669 - 10772707
Alignment:
Q  240 tgcaaaacccatccaaaataatcatcaaacctaccaaaa 278  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  10772669 tgcaaaacccatccaaaataaccatcaaacctaccaaaa 10772707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 31026755 - 31026713
Alignment:
Q  106 aaacttctacaaacaaaccaaaaacacccttcactgagggccc 148  Q
    ||||| |||||||||||||||||||||||| ||||||||||||    
T  31026755 aaactcctacaaacaaaccaaaaacaccctccactgagggccc 31026713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 24842972 - 24843041
Alignment:
Q  251 tccaaaataatcatcaaacctaccaaaa-ctcgtgtaaccgcactttacttttcttctgcagttcagcgc 319  Q
    ||||||| || ||||||||||||||||| | ||||||||||||| || ||| |||||||||||| |||||    
T  24842972 tccaaaagaaccatcaaacctaccaaaaacccgtgtaaccgcaccttgcttctcttctgcagttgagcgc 24843041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 11366489 - 11366521
Alignment:
Q  57 gtatatatgcggaacacccaaacaaacactcat 89  Q
    |||||||||||||||||||||||||||||||||    
T  11366489 gtatatatgcggaacacccaaacaaacactcat 11366521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 24350536 - 24350456
Alignment:
Q  240 tgcaaaacccatccaaaataatcatcaaacctaccaaaa-ctcgtgtaaccgcactttacttttcttctgcagttcagcgc 319  Q
    |||||||||| |||||||||| |||||||| |||||||| ||||||||| | ||| || ||| ||||||| |||| |||||    
T  24350536 tgcaaaacccctccaaaataaccatcaaacttaccaaaaactcgtgtaatcacacattgcttctcttctgtagttgagcgc 24350456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 30845197 - 30845277
Alignment:
Q  240 tgcaaaacccatccaaaataatcatcaaacctaccaaaact-cgtgtaaccgcactttacttttcttctgcagttcagcgc 319  Q
    |||||||||| |||||||||| ||||||||||||||||| | |  |||||||||| || ||| |||||| ||||| |||||    
T  30845197 tgcaaaacccctccaaaataaccatcaaacctaccaaaaatccaggtaaccgcaccttgcttctcttctacagttgagcgc 30845277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 9566546 - 9566639
Alignment:
Q  36 catgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaaattaaacttctacaaacaaaccaaaaacaccct 135  Q
    |||||||||||||| |||   |||||||||||||| || |||||||||||||||  ||||||||     ||||||| |||||  ||||||||||||||||    
T  9566546 catgcaaaggaaaagtgtcc-gtatatatgcggaatactcaaacaaacactcatctatcaaata-----taaacttttacaagtaaaccaaaaacaccct 9566639  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 24842818 - 24842861
Alignment:
Q  106 aaacttctacaaacaaaccaaaaacacccttcactgagggcccc 149  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||    
T  24842818 aaacttctacaaacaaaccaaaaacaccctctactaagggcccc 24842861  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 10670555 - 10670487
Alignment:
Q  17 taggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacac 85  Q
    ||||||||||||  |  ||||| |||||||||| | ||| |||||||||| ||||| ||||||||||||    
T  10670555 taggagacttaaaaaacaacatacaaaggaaaagtttgtcgtatatatgcagaacatccaaacaaacac 10670487  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 32748110 - 32748010
Alignment:
Q  3 aaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaa 102  Q
    |||||||||| ||||| || |||||| ||| ||||| |||||||| | ||||  || ||||  |||||||| ||||||||||| | | |||||||| |||    
T  32748110 aaggaatgctaggctaagatacttaaatagcaacatacaaaggaatagtgtgccgtgtatacacggaacactcaaacaaacacccgtacatcaaatgcaa 32748011  T
Q  103 a 103  Q
    |    
T  32748010 a 32748010  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 135
Target Start/End: Original strand, 31625562 - 31625658
Alignment:
Q  34 aacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaaattaaacttctacaaacaaaccaaaaacacc 133  Q
    ||||| |||||||||| ||||| ||||||||| ||||||||||||||||||| ||  ||||||||||     |||||||||| |||||||||||||||||    
T  31625562 aacatacaaaggaaaagtgtgtcgtatatatgtggaacacccaaacaaacacccaaacatcaaatac-----aaacttctaccaacaaaccaaaaacacc 31625656  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 31698825 - 31698909
Alignment:
Q  60 tatatgcggaacacccaaacaaacactcattcatcaaatacaaattaaacttctacaaacaaaccaaaaacacccttcactgagggcccc 149  Q
    |||||| |||||||||||| |||||||||| |||||||||||||     |||||||||||||||||||||||||||||||| ||| ||||    
T  31698825 tatatgtggaacacccaaataaacactcatacatcaaatacaaa-----cttctacaaacaaaccaaaaacacccttcactaaggacccc 31698909  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 3461008 - 3460873
Alignment:
Q  4 aggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaaa 103  Q
    ||||||||| |||||| |||||||| ||| ||||| |||||||||| |||   ||||||| |||||||||  |||||||||| ||| ||||||||| |||    
T  3461008 aggaatgctaggctagaagacttaaatagcaacatacaaaggaaaagtgtaccgtatatacgcggaacactgaaacaaacacccatacatcaaataaaaa 3460909  T
Q  104 ttaaacttctacaaacaaaccaaaaacacccttcactgagg 144  Q
    ||     ||| ||||||||||||||||||||| ||| ||||    
T  3460908 tt-----tcttcaaacaaaccaaaaacaccctccacggagg 3460873  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 52984881 - 52984785
Alignment:
Q  34 aacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaaattaaacttctacaaacaaaccaaaaacacc 133  Q
    ||||| ||||| |||| ||||| || |||||||| |||||||||||||||| | || |||||||||     ||||||||||| |||||||||||||||||    
T  52984881 aacatacaaagaaaaagtgtgtcgtgtatatgcgaaacacccaaacaaacaatgatacatcaaata-----taaacttctactaacaaaccaaaaacacc 52984787  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 31699011 - 31699091
Alignment:
Q  240 tgcaaaacccatccaaaataatcatcaaacctacc-aaaactcgtgtaaccgcactttacttttcttctgcagttcagcgc 319  Q
    ||||||||||||||||||||| ||| || |||||| ||||| |||||||||||||| | ||| |||||||||||| |||||    
T  31699011 tgcaaaacccatccaaaataaccatgaatcctaccaaaaacccgtgtaaccgcactctgcttctcttctgcagttgagcgc 31699091  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 148
Target Start/End: Complemental strand, 46743457 - 46743317
Alignment:
Q  3 aaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaa 102  Q
    ||||||||||  | ||||||| ||||  || ||||| ||||  |||| ||| | |||||| ||||||||| |||||||| ||| |||  |||||||||||    
T  46743457 aaggaatgctaagttaggagatttaaagagcaacatacaaacaaaaagtgtttcgtatatgtgcggaacatccaaacaatcacccatgtatcaaatacaa 46743358  T
Q  103 attaaacttctacaaacaaaccaaaaacacccttcactgagggccc 148  Q
    |     ||||||||| ||||||||||||||| | ||||||||||||    
T  46743357 a-----cttctacaagcaaaccaaaaacaccatccactgagggccc 46743317  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 296
Target Start/End: Complemental strand, 3460804 - 3460756
Alignment:
Q  249 catccaaaataatcatcaaacctaccaaaact-cgtgtaaccgcacttt 296  Q
    |||||||||||| ||||||||||||||||| | |||| |||||||||||    
T  3460804 catccaaaataaccatcaaacctaccaaaaatccgtgcaaccgcacttt 3460756  T

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Target: scaffold0083 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 2715 - 2815
Alignment:
Q  3 aaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaa 102  Q
    |||||||||| | |||||||||||||  || ||||| |||||||||| ||||  |||||||||||||||| ||||||||| || | |  |||||||||||    
T  2715 aaggaatgctagactaggagacttaacaagcaacatacaaaggaaaagtgtgccgtatatatgcggaacatccaaacaaagacccttgtatcaaatacaa 2814  T
Q  103 a 103  Q
    |    
T  2815 a 2815  T

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Target: scaffold0027 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 2483 - 2606
Alignment:
Q  17 taggagacttaagtaggaacatgcaaaggaaaactgtgttgtatatatgcggaacacccaaacaaacactcattcatcaaatacaaattaaacttctaca 116  Q
    |||||||||||| ||| ||||| |||||||||| || | |  |||||||||| |||| |||||||||| |  | ||||||||||||||      ||||||    
T  2483 taggagacttaaatagcaacatacaaaggaaaagtgcgct--atatatgcgggacactcaaacaaacatttgtacatcaaatacaaat-----gtctaca 2575  T
Q  117 aacaaaccaaaaacacccttcactgagggcc 147  Q
    ||||||||||||||||||| || ||||||||    
T  2576 aacaaaccaaaaacaccctccattgagggcc 2606  T

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