View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_low_19 (Length: 323)
Name: NF6690_low_19
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 305
Target Start/End: Original strand, 40466047 - 40466345
Alignment:
| Q |
7 |
gagatggattatgtgaagaagtgtaagagggtatggggaagcaacaatagattatttccagaagaaagtggcagtggcagctatgggaaattatcaaaag |
106 |
Q |
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| T |
40466047 |
gagatggattatgtgaagaagtgtaagagggtatggggaagcaacaatagattatttccagaagaaagtggcagtggcagctatgggaaattaccaaaag |
40466146 |
T |
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| Q |
107 |
agagtcacaaaaaccaaaaggatagtactaagaaaacaccacatggttgtctttgtgtctacgttggagcagagagacaaagattcgtaatcaagatcaa |
206 |
Q |
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| T |
40466147 |
agagtcacaaaaaacaaaaggatagtactaagaagccaccacatggttgtctttgtgtctacgttggaccagagagacaaagattcgtaatcaagatcaa |
40466246 |
T |
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| Q |
207 |
aatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttccttgtgatgttga |
305 |
Q |
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| T |
40466247 |
aatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttccttgtgatgttga |
40466345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 305
Target Start/End: Original strand, 40489017 - 40489327
Alignment:
| Q |
7 |
gagatggattatgtgaagaagtgtaagagggtatggggaagcaacaatagatt--att-tccagaagaaagt---ggcagtggcagctatgggaaattat |
100 |
Q |
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| T |
40489017 |
gagatggattttgtgaagaagtgtaaacgggtattgggaagcaataatagattgcatgatccagaagaaagtagtggcagtggcagctatggcaaattat |
40489116 |
T |
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| Q |
101 |
caaaagagagtcacaaaaaccaaaaggatagtac------taagaaaacaccacatggttgtctttgtgtctacgttggagcagagagacaaagattcgt |
194 |
Q |
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| T |
40489117 |
cagagaagagtcgcaaaaagcaaaaggataataacaataataagaaaacaccacatggttgtctttgtgtctacgttggaccagagagacaaagattcgt |
40489216 |
T |
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| Q |
195 |
aatcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttcct |
294 |
Q |
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| T |
40489217 |
aatcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttcct |
40489316 |
T |
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| Q |
295 |
tgtgatgttga |
305 |
Q |
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| T |
40489317 |
tgtgatgttga |
40489327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 7 - 306
Target Start/End: Original strand, 40472380 - 40472682
Alignment:
| Q |
7 |
gagatggattatgtgaagaagtgtaagagggtatggggaagcaacaatagattatttccagaagaaagtggcagtggcagctatgggaaattatcaaaag |
106 |
Q |
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| T |
40472380 |
gagatggattttttgaagaagtgtaagagggtatggggaagcaacaagagattatatccagaagaaagtggtagtggtagatatggcaagttatcagaga |
40472479 |
T |
|
| Q |
107 |
agagtcacaaaaaccaaaaggatagtactaagaaaa---caccacatggttgtctttgtgtctacgttggagcagagagacaaagattcgtaatcaagat |
203 |
Q |
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| T |
40472480 |
agtgccccaaaaagaaaaaggatattaataataagaatccaccacatggttatatttgtgtctacgttggaccagagagacaaagattcataatcaagat |
40472579 |
T |
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| Q |
204 |
caaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttccttgtgatgtt |
303 |
Q |
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| T |
40472580 |
caaaatattcaaccatcctttgttcaaaactcttttggaagatgttgagaacgaatatggatatagaaacgatggtcctctatggtttccttgtgacgtt |
40472679 |
T |
|
| Q |
304 |
gat |
306 |
Q |
| |
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||| |
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| T |
40472680 |
gat |
40472682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 40480377 - 40480456
Alignment:
| Q |
226 |
tttaaaactcttttagaagatgttgagaatgaatatggatatagaaatgatggtcctctatggcttccttgtgatgttga |
305 |
Q |
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| T |
40480377 |
tttaaaactcttttagaagatgttgacaatgaatatggatataaaagtgatggtcctctatggcttccttgtgacgttga |
40480456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 7624788 - 7624847
Alignment:
| Q |
197 |
tcaagatcaaaatattcaaccatcctttgtttaaaactcttttagaagatgttgagaatg |
256 |
Q |
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| T |
7624788 |
tcaagatcagaatattcaatcaccctttgtttaaaactcttttaggagctgttgagaatg |
7624847 |
T |
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