View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_low_2 (Length: 587)
Name: NF6690_low_2
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_low_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 34 - 587
Target Start/End: Original strand, 8403091 - 8403645
Alignment:
| Q |
34 |
ttgctcaataatgaattaaaattctcaaattgcaatgcaggcaaaatataatgtttatcgtcaacattatcattttagaactatgtttgaaccatgccgc |
133 |
Q |
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| T |
8403091 |
ttgctcaataatgaattaaaattctcaaattgcaatggaggcaaaagataatggttatcgtcaacattatcattttagaactatgtttgaaccatgccgc |
8403190 |
T |
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| Q |
134 |
tattcatttgtcccttttgctcattaacatttccaagattcatgtgaatatgacatttttt--gttaattagaggatacatcatttttgttcatatcatg |
231 |
Q |
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| T |
8403191 |
tattcatttgtcccttttgctcattaacatttccaagattcatgtgaatatggcattttttttgttaattaggggatacatcatttt-gttcatatcatg |
8403289 |
T |
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| Q |
232 |
gagaatatttccctgtccgggttgtgtcaacgcccaacacttggttcaatctggccatctaggtggccaaaattgatcaagcattgtaatatatattcat |
331 |
Q |
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| T |
8403290 |
gagaatatttccctatccgggttgcgtcaacgcccaacacttggttcaatctggccatctaggtggccaaaattgatcaagcattgttatatatattcat |
8403389 |
T |
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| Q |
332 |
caagcatttttgtacccattgtatttattatgagaaaaatgggagtacattatacaattctctaacatgtgttaagtaagagtttcacctcaaacgttca |
431 |
Q |
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| T |
8403390 |
caagcattgtcgtacccattgtatttattatgagaaaaatgggagtacattatacaattctctaacatgtgttaagtaagagtttcacctcaaacgttca |
8403489 |
T |
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| Q |
432 |
acatctttatttattttcaaaataatcgaaagaatctatatgtaaagaatgaatcaaacaagaaattaaaacaaaaatgttgttttcagaagagcttgtt |
531 |
Q |
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| T |
8403490 |
acatctttatttattttcaaaataatcgaaagaatctatatgtaaagaatgaatcaaacaagaaatcaaaacaaaaatgttgttttcagaagagcttgtt |
8403589 |
T |
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| Q |
532 |
ggcgaattcatcgatctcacgtccttccatccgatagacatcagattttgaggcaa |
587 |
Q |
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| T |
8403590 |
ggcgaattcatcgatctcacgtccttccatccgatagacatcagattttgaggcaa |
8403645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 54 - 587
Target Start/End: Original strand, 8428991 - 8429500
Alignment:
| Q |
54 |
attctcaaattgcaatgcaggcaaaatataatgtttatcgtcaacattatcattttagaactatgtttgaaccatgccgctattcatttgtcccttttgc |
153 |
Q |
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| T |
8428991 |
attctcatattgcaatggtggcaaacgataatggttaatgtcgagattggcattttagaactatgtttgaaccatgtcgctattcatttgtctcctatgc |
8429090 |
T |
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| Q |
154 |
tcattaacatttccaagattcatg----tgaatatgacattttttgttaattagaggatacatcatttttgttcatatcatggagaatatttccctgtcc |
249 |
Q |
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| T |
8429091 |
tcattaacattcccaagattcatgcatatgaatatggcatttttcgtcaattaggggataaatga-ttttgt---tatcctggagagtgtttccctatcc |
8429186 |
T |
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| Q |
250 |
gggttgtgtcaacgcccaacacttggttcaatctggcc-----atctaggtggccaaaattgatcaagcattgtaatatatattcatcaagcatttttgt |
344 |
Q |
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| T |
8429187 |
aggttgtgtcaatgcctaacacttggttcaatgtgaccacctaatctaggtggccaaaacagatcaagcatcgt--tgtattttccacaagcattatcgt |
8429284 |
T |
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| Q |
345 |
acccattgtatttattatgagaaaaatgggagtacattatacaattctctaacatgtgttaagtaagagtttcacctcaaacgttcaacatctttattta |
444 |
Q |
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| T |
8429285 |
acccgttgtatttactataagaaaaatgggagtacattatacaattctctaa---------------agttactcctcaaacgttcaac----ggtttta |
8429365 |
T |
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| Q |
445 |
ttttcaaaataatcgaaagaatctatatgtaaagaatgaatcaaacaagaaattaaaacaaaaatgttgttttcagaagagcttgttggcgaattcatcg |
544 |
Q |
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| T |
8429366 |
ttttcaaaataattgaaagaattcgtatgaaaagaatgaatcaaac--------aaaaaaaaaatgttgttttcagaagagtttgttggcgaattcatct |
8429457 |
T |
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| Q |
545 |
atctcacgtccttccatccgatagacatcagattttgaggcaa |
587 |
Q |
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| T |
8429458 |
atctcacgtccttccatccgatagagagcagatttcgaggcaa |
8429500 |
T |
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