View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6690_low_21 (Length: 310)
Name: NF6690_low_21
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_low_21 |
 | |
|
| [»] chr6 (13 HSPs) |
| |
|
| [»] scaffold1408 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 310
Target Start/End: Original strand, 33388139 - 33388433
Alignment:
| Q |
16 |
cctgtgatccacccaaacttatgcttgttctcacgatgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388139 |
cctgtgatccacccaaacttatgcttgttctcacgatgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgct |
33388238 |
T |
|
| Q |
116 |
ccaaatttaaatatacaagtttggaaagcttcctcaagctaggtagtgtcacaaaatcgtttccccctaaatttaatttttctagtgagtgtaaacattc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33388239 |
ccaaatttaaatatacaagtttggaaagcttcctcaagctaggtagtgtcacaaaatcgtttccccctaaatttaatttttctagtgagtgtaaacattc |
33388338 |
T |
|
| Q |
216 |
aattgaatcgggaacttgatttagatgacaaaagctaatgtcaactttacgcaaacaatttaagctatgcacggatgtcgaaaaatatgtgtttc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||| |
|
|
| T |
33388339 |
aattgaatcgggaacttgatttagatgacaaaagctaatgtcaactttacgcaaacaatttaagctatgcacggatggcaacaaatatgtgtttc |
33388433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 40 - 270
Target Start/End: Complemental strand, 31562826 - 31562596
Alignment:
| Q |
40 |
ttgttctcacgatgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttgg |
139 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31562826 |
ttgttctcacgacgatcccgcccaatagtggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaatttaaatatacaagtttgg |
31562727 |
T |
|
| Q |
140 |
aaagcttcctcaagctaggtagtgtcacaaaatcgtttccccctaaatttaatttttctagtgagtgtaaacattcaattgaatcgggaacttgatttag |
239 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||||||||| ||| || ||||| |||| |
|
|
| T |
31562726 |
aaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgagcttaaacattcaattgcatcaggcacttggcttag |
31562627 |
T |
|
| Q |
240 |
atgacaaaagctaatgtcaactttacgcaaa |
270 |
Q |
| |
|
| | |||||||||||||||||| |||||||| |
|
|
| T |
31562626 |
acggcaaaagctaatgtcaactgtacgcaaa |
31562596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 55 - 292
Target Start/End: Complemental strand, 33644530 - 33644293
Alignment:
| Q |
55 |
tcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagc |
154 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| ||||||| ||| |||||||| || ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33644530 |
tcccgcccaatagtggtaggggaaggaagttgaggcaaagattccaacaacttgcagtgttccaaatttaaatatacaagtttggaaagcttcctcaggc |
33644431 |
T |
|
| Q |
155 |
taggtagtgtcacaaaatcgtttccccctaaatttaatttttctagtgagtgtaaacattcaattgaatcgggaacttgatttagatgacaaaagctaat |
254 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||| || |||||||||||||||||||| ||||| || ||||| | ||| ||||||| |
|
|
| T |
33644430 |
taggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgaatgtaaacattcaattgaatcaggaacatggcttagacggcaatagctaat |
33644331 |
T |
|
| Q |
255 |
gtcaactttacgcaaacaatttaagctatgcacggatg |
292 |
Q |
| |
|
||||| |||||||||||| ||||||||||| ||||| |
|
|
| T |
33644330 |
gtcaatgctacgcaaacaatataagctatgcaaggatg |
33644293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 65 - 286
Target Start/End: Original strand, 33410033 - 33410254
Alignment:
| Q |
65 |
tagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagctaggtagtgt |
164 |
Q |
| |
|
|||||||| || ||||||||||||| ||||||| ||| ||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33410033 |
tagtggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgctgcaaatctaaatattcaagtttggaaagcttcctcaagctaggtagtgt |
33410132 |
T |
|
| Q |
165 |
cacaaaatcgtttccccctaaatttaatttttctagtgagtgtaaacattcaattgaatcgggaacttgatttagatgacaaaagctaatgtcaacttta |
264 |
Q |
| |
|
|||||||| ||||||| |||||| |||| ||||||| || ||||||| |||||||| ||| |||||||| |||||||| ||||||||||| ||||||| | |
|
|
| T |
33410133 |
cacaaaatagtttcccgctaaatataatctttctagcgaatgtaaaccttcaattgcatcaggaacttggtttagatggcaaaagctaatatcaacttga |
33410232 |
T |
|
| Q |
265 |
cgcaaacaatttaagctatgca |
286 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
33410233 |
cgcaaacaatataagctatgca |
33410254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 43 - 274
Target Start/End: Original strand, 33262632 - 33262863
Alignment:
| Q |
43 |
ttctcacgatgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaa |
142 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33262632 |
ttctcacgatgatcccgcccaatagaggtaggagaaggaagttgaggcaaagattccaacaacctgcaatgctccaaatttaaatatacaagtttggaaa |
33262731 |
T |
|
| Q |
143 |
gcttcctcaagctaggtagtgtcacaaaatcgtttccccctaaatttaatttttctagtgagtgtaaacattcaattgaatcgggaacttgatttagatg |
242 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| | ||||| |||||||||| | || ||||| ||||| |
|
|
| T |
33262732 |
gcttcctcaggctaggtagtgtcacaaaatcatttccccctaaatttaatctttctagccaatgtaagcattcaattgtgccaggcacttggcgtagata |
33262831 |
T |
|
| Q |
243 |
acaaaagctaatgtcaactttacgcaaacaat |
274 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| |
|
|
| T |
33262832 |
gcaaaagcttatgtcaacattacgcaaacaat |
33262863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 55 - 274
Target Start/End: Original strand, 33358885 - 33359104
Alignment:
| Q |
55 |
tcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagc |
154 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
33358885 |
tcccacccaatagtggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgttccaaatttaaatatacaagtttagaaagcttcctcaggc |
33358984 |
T |
|
| Q |
155 |
taggtagtgtcacaaaatcgtttccccctaaatttaatttttctagtgagtgtaaacattcaattgaatcgggaacttgatttagatgacaaaagctaat |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||||||||||| ||||||| ||||| |||| |
|
|
| T |
33358985 |
taggtagtgtcacaaaatcgtttccccctaaatttaatatttctagccaatgtaaacattcaattgcatcgggaacttgacttagatggcaaaaactaaa |
33359084 |
T |
|
| Q |
255 |
gtcaactttacgcaaacaat |
274 |
Q |
| |
|
| |||| ||||||||||| |
|
|
| T |
33359085 |
ggcaacaacacgcaaacaat |
33359104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 40 - 292
Target Start/End: Original strand, 33285621 - 33285873
Alignment:
| Q |
40 |
ttgttctcacgatgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttgg |
139 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| || ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33285621 |
ttgttctcacgatgatcctccccaatattggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgctccaaatttaaatatacaagtttgg |
33285720 |
T |
|
| Q |
140 |
aaagcttcctcaagctaggtagtgtcacaaaatcgtttccccctaaatttaatttttctagtgagtgtaaacattcaattgaatcgggaacttgatttag |
239 |
Q |
| |
|
| ||||| |||| |||||||||||||||||||| |||||||||||| |||||| ||||||| | | |||||||||||||| || | ||||| |||| |
|
|
| T |
33285721 |
acagctttctcaggctaggtagtgtcacaaaattgtttccccctaagtttaatatttctagccaatataaacattcaattgcatatgacacttggcttag |
33285820 |
T |
|
| Q |
240 |
atgacaaaagctaatgtcaactttacgcaaacaatttaagctatgcacggatg |
292 |
Q |
| |
|
| | ||||||||||||| ||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
33285821 |
acggcaaaagctaatgttaacttcacgcaaacaatataagctatgcaaggatg |
33285873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 63 - 307
Target Start/End: Original strand, 33304510 - 33304754
Alignment:
| Q |
63 |
aatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagctaggtagt |
162 |
Q |
| |
|
|||| ||||| |||||||||||||||| ||||||| ||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33304510 |
aatattggtaggagaaggaagttgaggcaaagattccaacaacatgcaatgctgcaaatttaaatatacaagtttggaaagcttcctcaggctaggtaga |
33304609 |
T |
|
| Q |
163 |
gtcacaaaatcgtttccccctaaatttaatttttctagtgagtgtaaacattcaattgaatcgggaacttgatttagatgacaaaagctaatgtcaactt |
262 |
Q |
| |
|
|||||||||| ||||||| |||| |||||| ||||||| |||| |||||||||||||| ||| |||||||| ||||||| ||||||||||||||||| | |
|
|
| T |
33304610 |
gtcacaaaattgtttccctctaagtttaatctttctagcgagtataaacattcaattgcatcaggaacttggcttagatggcaaaagctaatgtcaacgt |
33304709 |
T |
|
| Q |
263 |
tacgcaaacaatttaagctatgcacggatgtcgaaaaatatgtgt |
307 |
Q |
| |
|
||||||||| ||||||||||| ||||| | | |||||||||| |
|
|
| T |
33304710 |
ctcgcaaacaaactaagctatgcaaggatggcaacaaatatgtgt |
33304754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 55 - 307
Target Start/End: Original strand, 33399072 - 33399324
Alignment:
| Q |
55 |
tcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagc |
154 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| ||||||| ||| |||||||| || |||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
33399072 |
tcccgcccaatagtggtaggggaaggaagttgaggcaaagattccaacaacttgcagtgttccaaatttaaatatacaagttcggaaagcttcctcaggc |
33399171 |
T |
|
| Q |
155 |
taggtagtgtcacaaaatcgtttccccctaaatttaatttttctagtgagtgtaaacattcaattgaatcgggaacttgatttagatgacaaaagctaat |
254 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||| ||||||| | |||||| |||||||| ||| |||||||| |||||| ||||||||||| |
|
|
| T |
33399172 |
taggtagtgtcacaaaattgtttccctttaaatttaatctttctagccaatgtaaatcttcaattgcatcaggaacttggcttagattgcaaaagctaat |
33399271 |
T |
|
| Q |
255 |
gtcaactttacgcaaacaatttaagctatgcacggatgtcgaaaaatatgtgt |
307 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||| | | |||||||||| |
|
|
| T |
33399272 |
gtcaactccacgcaaacaatctaagctatgcaaggatggcaacaaatatgtgt |
33399324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 52 - 259
Target Start/End: Original strand, 33271840 - 33272047
Alignment:
| Q |
52 |
tgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaagcttcctca |
151 |
Q |
| |
|
|||||||||||| |||| | ||||||||||| |||| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33271840 |
tgatcccgcccactagtaggtggagaaggaagtcgaggcaaagattccaacaacttgcaatgttccaaatttaaatatacaagtttggaaagcttcctca |
33271939 |
T |
|
| Q |
152 |
agctaggtagtgtcacaaaatcgtttccccctaaatttaatttttctagtgagtgtaaacattcaattgaatcgggaacttgatttagatgacaaaagct |
251 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||| ||||||| | |||||||||||||||| ||| |||||||| |||||| |||||||| |
|
|
| T |
33271940 |
ggctaggtagtgtcacaaaattgtttccccctaaatctaatctttctagccaatgtaaacattcaattgcatcaggaacttggcgtagatggcaaaagct |
33272039 |
T |
|
| Q |
252 |
aatgtcaa |
259 |
Q |
| |
|
|||||||| |
|
|
| T |
33272040 |
aatgtcaa |
33272047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 45 - 286
Target Start/End: Original strand, 33057577 - 33057818
Alignment:
| Q |
45 |
ctcacgatgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaagc |
144 |
Q |
| |
|
|||||||||| || |||| || ||||| || ||||||||||||| ||||||| ||| || ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33057577 |
ctcacgatgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggatagc |
33057676 |
T |
|
| Q |
145 |
ttcctcaagctaggtagtgtcacaaaatcgtttccccctaaatttaatttttctagtgagtgtaaacattcaattgaatcgggaacttgatttagatgac |
244 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||| | |||||||||||||||| ||| || || || |||||| | |
|
|
| T |
33057677 |
ttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgcatcaggcacatggcttagatagc |
33057776 |
T |
|
| Q |
245 |
aaaagctaatgtcaactttacgcaaacaatttaagctatgca |
286 |
Q |
| |
|
||||||| |||||||| |||||||||||| ||| ||||||| |
|
|
| T |
33057777 |
aaaagcttatgtcaaccttacgcaaacaacataaactatgca |
33057818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 77 - 274
Target Start/End: Original strand, 9166792 - 9166989
Alignment:
| Q |
77 |
aaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagctaggtagtgtcacaaaatcgtt |
176 |
Q |
| |
|
||||||||||||| ||| | | ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
9166792 |
aaggaagttgaggcaaaaactccaacaacctgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagctaggtagtgtcgcaaaatcgat |
9166891 |
T |
|
| Q |
177 |
tccccctaaatttaatttttctagtgagtgtaaacattcaattgaatcgggaacttgatttagatgacaaaagctaatgtcaactttacgcaaacaat |
274 |
Q |
| |
|
||||||||| |||||| ||||||| | ||||||||||||||| ||| || | ||| ||||||| ||| ||||||||||||||| ||||||||||| |
|
|
| T |
9166892 |
tccccctaagtttaatctttctagccaccgtaaacattcaattgtatcaggcaattggcttagatggcaatagctaatgtcaacttcacgcaaacaat |
9166989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 44 - 200
Target Start/End: Complemental strand, 28870170 - 28870014
Alignment:
| Q |
44 |
tctcacgatgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaag |
143 |
Q |
| |
|
|||||| || ||||||||| |||| |||| |||||||||||||||| ||||||| || ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28870170 |
tctcacaattatcccgcccgataggggtaggagaaggaagttgaggcaaagattcaaacaacttgcaatgctccaaatttaaatattcaagtttggaaag |
28870071 |
T |
|
| Q |
144 |
cttcctcaagctaggtagtgtcacaaaatcgtttccccctaaatttaatttttctag |
200 |
Q |
| |
|
|||||||| |||||| ||||||||||||| |||||||| ||| |||||| ||||||| |
|
|
| T |
28870070 |
cttcctcaggctaggcagtgtcacaaaatagtttccccgtaagtttaatctttctag |
28870014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 55 - 286
Target Start/End: Complemental strand, 17440870 - 17440639
Alignment:
| Q |
55 |
tcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagc |
154 |
Q |
| |
|
|||||||| |||| |||| || ||||||||||||| ||||||| ||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
17440870 |
tcccgcccgatagcggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgctgcaaatttaaatatacaagtttcgaaagcttcctcaggc |
17440771 |
T |
|
| Q |
155 |
taggtagtgtcacaaaatcgtttccccctaaatttaatttttctagtgagtgtaaacattcaattgaatcgggaacttgatttagatgacaaaagctaat |
254 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||| |||||| | |||||||||||||||| ||| || ||||| ||||| | ||||| ||||| |
|
|
| T |
17440770 |
taggtagtgtcgcaaaatcatttccccctaaatttaatctttctacccaatgtaaacattcaattgtatccggcacttggcttagacggcaaaaactaat |
17440671 |
T |
|
| Q |
255 |
gtcaactttacgcaaacaatttaagctatgca |
286 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |
|
|
| T |
17440670 |
gtcaacttcacgcaaacaatataagctatgca |
17440639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 40 - 274
Target Start/End: Original strand, 650 - 884
Alignment:
| Q |
40 |
ttgttctcacgatgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttgg |
139 |
Q |
| |
|
||||||||| ||| |||| ||||||||||| | || ||||||||||||| || |||| ||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
650 |
ttgttctcatgataatccggcccaatagtgcttggaaaaggaagttgaggcaacgattccaacaacttgcaatgctccaaatttaaatatacaagtctgg |
749 |
T |
|
| Q |
140 |
aaagcttcctcaagctaggtagtgtcacaaaatcgtttccccctaaatttaatttttctagtgagtgtaaacattcaattgaatcgggaacttgatttag |
239 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||| ||| ||||| || |||| |
|
|
| T |
750 |
aaagcttcctcatgctaggtagtgtcacaaaattatttccccctaaatttaatctttctagccgatgtaaacattcaattgcatcaggaacatggcttag |
849 |
T |
|
| Q |
240 |
atgacaaaagctaatgtcaactttacgcaaacaat |
274 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||| |
|
|
| T |
850 |
atggcaaaagctaatgtcaatgttacgcaaacaat |
884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 40 - 274
Target Start/End: Original strand, 6396 - 6630
Alignment:
| Q |
40 |
ttgttctcacgatgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttgg |
139 |
Q |
| |
|
||||||||| ||| |||| ||||||||||| | || ||||||||||||| || |||| ||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6396 |
ttgttctcatgataatccggcccaatagtgcttggaaaaggaagttgaggcaacgattccaacaacttgcaatgctccaaatttaaatatacaagtctgg |
6495 |
T |
|
| Q |
140 |
aaagcttcctcaagctaggtagtgtcacaaaatcgtttccccctaaatttaatttttctagtgagtgtaaacattcaattgaatcgggaacttgatttag |
239 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||| ||| ||||| || |||| |
|
|
| T |
6496 |
aaagcttcctcatgctaggtagtgtcacaaaattatttccccctaaatttaatctttctagccgatgtaaacattcaattgcatcaggaacatggcttag |
6595 |
T |
|
| Q |
240 |
atgacaaaagctaatgtcaactttacgcaaacaat |
274 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||| |
|
|
| T |
6596 |
atggcaaaagctaatgtcaatgttacgcaaacaat |
6630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 77 - 201
Target Start/End: Original strand, 31157257 - 31157381
Alignment:
| Q |
77 |
aaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagctaggtagtgtcacaaaatcgtt |
176 |
Q |
| |
|
||||||||||||| ||||||| ||| | ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||||||||||||| ||| |
|
|
| T |
31157257 |
aaggaagttgaggcaaagattccaaaagcttgcaatgctccaagtttaaatatacaagtttggaaagctccctcaggctaggcagtgtcacaaaattgtt |
31157356 |
T |
|
| Q |
177 |
tccccctaaatttaatttttctagt |
201 |
Q |
| |
|
||||||| ||||||| |||||||| |
|
|
| T |
31157357 |
cccccctatatttaatctttctagt |
31157381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 77 - 240
Target Start/End: Complemental strand, 31499016 - 31498853
Alignment:
| Q |
77 |
aaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagctaggtagtgtcacaaaatcgtt |
176 |
Q |
| |
|
||||||||||||| ||||||| ||| || |||||||| || || |||||| |||||||||||||||| | ||||| |||||||| ||||||||| | ||| |
|
|
| T |
31499016 |
aaggaagttgaggcaaagattccaacaatttgcaatgttctaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaacttgtt |
31498917 |
T |
|
| Q |
177 |
tccccctaaatttaatttttctagtgagtgtaaacattcaattgaatcgggaacttgatttaga |
240 |
Q |
| |
|
||||||||||||||| | ||||| | ||||||||| |||||| |||||| | ||| |||||| |
|
|
| T |
31498916 |
tccccctaaatttaactcttctaaccaatgtaaacatccaattgcatcggggagttggtttaga |
31498853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 192
Target Start/End: Complemental strand, 31478964 - 31478846
Alignment:
| Q |
74 |
gagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagctaggtagtgtcacaaaatc |
173 |
Q |
| |
|
||||||||||| ||| ||||||||||| | |||||||||||| || |||||||||||||||| ||||||| ||||| ||||||| ||||||||||| |
|
|
| T |
31478964 |
gagaaggaagtacaggcaaagatttcaacagcttgcaatgctctaagcttaaatatacaagttttgaaagctccctcagactaggtactgtcacaaaatt |
31478865 |
T |
|
| Q |
174 |
gtttccccctaaatttaat |
192 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
31478864 |
gtttccccctaaatttaat |
31478846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 200
Target Start/End: Original strand, 31148343 - 31148466
Alignment:
| Q |
77 |
aaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagctaggtagtgtcacaaaatcgtt |
176 |
Q |
| |
|
||||||||||||| || |||||||| ||||| ||||||| ||| ||||||||| ||||| |||| |||||||| | |||||||| |||||||||| ||| |
|
|
| T |
31148343 |
aaggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaaaattgtt |
31148442 |
T |
|
| Q |
177 |
tccccctaaatttaatttttctag |
200 |
Q |
| |
|
|||||||| ||||||| ||||||| |
|
|
| T |
31148443 |
tccccctagatttaatctttctag |
31148466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 31504117 - 31504032
Alignment:
| Q |
106 |
ttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagctaggtagtgtcacaaaatcgtttccccctaaatttaa |
191 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
31504117 |
ttgcaatgctccaagtttaaatatacaagtttggaaagctccctcaggctaggtactgtcacaaaattatttccccctaagtttaa |
31504032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 31472509 - 31472411
Alignment:
| Q |
74 |
gagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagctaggtagtgtcacaaaat |
172 |
Q |
| |
|
|||||||||||| ||| ||||||||||| | || ||| || || ||||||||||||||||||||||||| |||| |||||||| ||||||||||| |
|
|
| T |
31472509 |
gagaaggaagtttaggcaaagatttcaactgcgggcgatgttctaagtttaaatatacaagtttggaaagctccctcgggctaggtactgtcacaaaat |
31472411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 31526488 - 31526569
Alignment:
| Q |
118 |
aaatttaaatatacaagtttggaaagcttcctcaagctaggtagtgtcacaaaatcgtttccccctaaatttaatttttcta |
199 |
Q |
| |
|
||||| |||||| ||||||| ||||| | || || ||||| | ||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
31526488 |
aaattcaaatatgcaagttttgaaagttctctgaaactaggcaatgtcacaaaattgtttccccctaaatttaatctttcta |
31526569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 192
Target Start/End: Complemental strand, 6785354 - 6785240
Alignment:
| Q |
78 |
aggaagttgaggaaaagatttcaagaacttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaagctaggtagtgtcacaaaatcgttt |
177 |
Q |
| |
|
|||||| | ||| ||| ||||||| |||||||| || ||||| ||||||||||| ||||||||||||| | ||| |||||| | ||||||||||| |||| |
|
|
| T |
6785354 |
aggaagatcaggcaaatatttcaacaacttgcagtgatccaagtttaaatatacgagtttggaaagctccttcaggctaggcaatgtcacaaaatggttt |
6785255 |
T |
|
| Q |
178 |
ccccctaaatttaat |
192 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
6785254 |
ccccctaaatttaat |
6785240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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