View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_low_22 (Length: 309)
Name: NF6690_low_22
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 39075639 - 39075930
Alignment:
| Q |
1 |
cattgtggataatcttcaagcgtgacatggtgattaagcttaaacaagagctaatgatgaattctttcaaaacaattgatggtagaggaacaaatgtgca |
100 |
Q |
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| T |
39075639 |
cattgtggataatcttcaagcgtgacatggttattaagcttaaacaagagctaatgatgaattctttcaaaacaattgatggtagaggaacaaatgtgca |
39075738 |
T |
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| Q |
101 |
cattgctggtggaccttgtattactgtacaatttgtgacaaatattattattcatgggattaatatacatgattgtaaaagaggtgggaatacttatgtg |
200 |
Q |
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| T |
39075739 |
cattgctggtggaccttgtattactgtacaatttgtgacaaatattattattcatgggattaatatacatgattgtaaaagaggtgggaatacttatgtg |
39075838 |
T |
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| Q |
201 |
agagatacacctacacattatggttttaggacactttctgatggtgatggagtgtctatttttggtgggagtcatgtttgggttgatcattg |
292 |
Q |
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| T |
39075839 |
agagatacacctacacattatggttttaggacactttctgatggtgatggagtgtctatttttggtgggagtcatgtttgggttgatcattg |
39075930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 292
Target Start/End: Complemental strand, 34288757 - 34288489
Alignment:
| Q |
24 |
gacatggtgattaagcttaaacaagagctaatgatgaattctttcaaaacaattgatggtagaggaacaaatgtgcacattgctggtggaccttgtatta |
123 |
Q |
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| T |
34288757 |
gacatggtgatcaaattaaaagaagagttaataatgaactctttcaaaacaattgatggtagaggagctagtgtgcacattgctggtggtccatgcatta |
34288658 |
T |
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| Q |
124 |
ctgtacaatttgtgacaaatattattattcatgggattaatatacatgattgtaaaagaggtgggaatacttatgtgagagatacacctacacattatgg |
223 |
Q |
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| T |
34288657 |
ctatacaatatgtcacaaacattattatccatgggatacatatacatgattgtaaacaaggtgggaatgctatggtgagggactccccacgacatttcgg |
34288558 |
T |
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| Q |
224 |
ttttaggacactttctgatggtgatggagtgtctatttttggtgggagtcatgtttgggttgatcattg |
292 |
Q |
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| T |
34288557 |
gtggaggactatatcggacggtgatggagtgtctatctttggtggaagtcatgtttgggttgatcattg |
34288489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 39082144 - 39082210
Alignment:
| Q |
57 |
atgaattctttcaaaacaattgatggtagaggaacaaatgtgcacattgctggtggaccttgtatta |
123 |
Q |
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| T |
39082144 |
atgaattctttcaaaacaattgatggtagaggtgtaaatgtacacattgctgaaggaccatgtatta |
39082210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 24 - 292
Target Start/End: Original strand, 43131096 - 43131364
Alignment:
| Q |
24 |
gacatggtgattaagcttaaacaagagctaatgatgaattctttcaaaacaattgatggtagaggaacaaatgtgcacattgctggtggaccttgtatta |
123 |
Q |
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| T |
43131096 |
gacatggtgattcagctaaaagaagagcttataatgaattcattcaagaccattgatggaagaggagctagtgttcacattgctggtggtccatgtatta |
43131195 |
T |
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| Q |
124 |
ctgtacaatttgtgacaaatattattattcatgggattaatatacatgattgtaaaagaggtgggaatacttatgtgagagatacacctacacattatgg |
223 |
Q |
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| T |
43131196 |
caattcagtatgtgactaatgttataatacatggtatacatatacatgattgtaaacaaggtgggaatgctatggtgagggattctccaggacattatgg |
43131295 |
T |
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| Q |
224 |
ttttaggacactttctgatggtgatggagtgtctatttttggtgggagtcatgtttgggttgatcattg |
292 |
Q |
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| T |
43131296 |
gtggagaacagtatcagacggtgatggtgtttcaatctttggtggtagtcatgtttgggtggatcattg |
43131364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 17909796 - 17909888
Alignment:
| Q |
15 |
ttcaagcgtgacatggtgattaagcttaaacaagagctaatgatgaattctttcaaaacaattgatggtagaggaacaaatgtgcacattgct |
107 |
Q |
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| T |
17909796 |
ttcaagagagacatggttattcagtttaaacaagagcttattgtgaacagtttcaagacaattgatggaagaggagctaatgtgcatattgct |
17909888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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