View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6690_low_26 (Length: 288)

Name: NF6690_low_26
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6690_low_26
NF6690_low_26
[»] chr2 (19 HSPs)
chr2 (1-248)||(8403626-8403873)
chr2 (53-243)||(8429486-8429676)
chr2 (137-241)||(8376193-8376297)
chr2 (18-97)||(8368104-8368183)
chr2 (18-97)||(8401227-8401306)
chr2 (18-97)||(8422804-8422883)
chr2 (29-83)||(8411867-8411921)
chr2 (29-83)||(8433965-8434019)
chr2 (31-83)||(8376087-8376139)
chr2 (137-241)||(8395879-8395983)
chr2 (137-241)||(8405589-8405693)
chr2 (31-83)||(8431018-8431070)
chr2 (137-212)||(8430889-8430964)
chr2 (15-74)||(8459649-8459708)
chr2 (30-79)||(8416952-8417001)
chr2 (137-241)||(8411709-8411813)
chr2 (137-241)||(8433807-8433911)
chr2 (137-212)||(8416822-8416897)
chr2 (33-83)||(8405747-8405797)
[»] chr4 (2 HSPs)
chr4 (38-211)||(55335978-55336151)
chr4 (37-241)||(55330516-55330720)
[»] scaffold1738 (1 HSPs)
scaffold1738 (137-241)||(25-129)


Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 8403873 - 8403626
Alignment:
Q  1 ctgctttttccggtgctttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403873 ctgctttttccggtgctttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttt 8403774  T
Q  101 tgagcttttggaagagacagttgaacaaactattgaagagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattg 200  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8403773 tgagcttttggaagagacagttgaagaaattattgaagagaaagatttgaataaaagagaaaatgatgaggtgtttgagatgaagattgcattgcaattg 8403674  T
Q  201 ggaagaagtgtaatggagatgagagagcttgcctcaaaatctgatgtc 248  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8403673 ggaagaagtgtaatgcagatgagagagcttgcctcaaaatctgatgtc 8403626  T

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Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 53 - 243
Target Start/End: Complemental strand, 8429676 - 8429486
Alignment:
Q  53 acaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattgaagagaaagatttgaat 152  Q
    ||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  8429676 acaagttggtatgatgtttcagatgtatagaaactgtagtggattttttgagcttttggaagagacggttgaagaaactattgaagataaagatttgaat 8429577  T
Q  153 aaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatctg 243  Q
    ||||||||||| || || |||||||| ||||||||||| ||  |||||||||||||||||||||||||||||||  ||||||| |||||||    
T  8429576 aaaagagaaaacggggaagtgtttgaaatgaagattgctttaaaattgggaagaagtgtaatggagatgagagaatttgcctcgaaatctg 8429486  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 8376193 - 8376297
Alignment:
Q  137 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 236  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||||||||   ||| |||| || |||||||||    
T  8376193 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcctca 8376292  T
Q  237 aaatc 241  Q
    |||||    
T  8376293 aaatc 8376297  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 8368183 - 8368104
Alignment:
Q  18 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 97  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8368183 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8368104  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 8401227 - 8401306
Alignment:
Q  18 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 97  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8401227 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8401306  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 8422804 - 8422883
Alignment:
Q  18 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 97  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8422804 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8422883  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 8411921 - 8411867
Alignment:
Q  29 tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 83  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8411921 tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8411867  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 8434019 - 8433965
Alignment:
Q  29 tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 83  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8434019 tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8433965  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 8376087 - 8376139
Alignment:
Q  31 ttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 83  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8376087 ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8376139  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 8395879 - 8395983
Alignment:
Q  137 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 236  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||||||||   ||| |||| || ||||| |||    
T  8395879 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatca 8395978  T
Q  237 aaatc 241  Q
    |||||    
T  8395979 aaatc 8395983  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 8405693 - 8405589
Alignment:
Q  137 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 236  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||||||||   ||| |||| || ||||| |||    
T  8405693 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatctgagctgagggaacttgcatca 8405594  T
Q  237 aaatc 241  Q
    |||||    
T  8405593 aaatc 8405589  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 8431070 - 8431018
Alignment:
Q  31 ttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 83  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8431070 ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8431018  T

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Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 8430964 - 8430889
Alignment:
Q  137 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgta 212  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| |||||||| || ||||||||||||| |||||||    
T  8430964 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaagatggctttgcaattgggaaaaagtgta 8430889  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 8459649 - 8459708
Alignment:
Q  15 gctttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgag 74  Q
    |||||||||||||||||||| || || || |||||||| |||||||||||||| ||||||    
T  8459649 gctttggcaactgttgttaacacattagaacatggagggcaagttggtatggtttttgag 8459708  T

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Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 8417001 - 8416952
Alignment:
Q  30 gttaatacttttgagcatggaggacaagttggtatggtgtttgagatgta 79  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||| |||||    
T  8417001 gttaatacttttgagcatggtggacaagttggcatggtttttgaaatgta 8416952  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 8411813 - 8411709
Alignment:
Q  137 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 236  Q
    ||||||||||||  | |||||||||||||| ||| | |||||  |||| || || |||| ||||||||||||||| |  ||| |||| || |||||||||    
T  8411813 agagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctca 8411714  T
Q  237 aaatc 241  Q
    |||||    
T  8411713 aaatc 8411709  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 8433911 - 8433807
Alignment:
Q  137 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 236  Q
    ||||||||||||  | |||||||||||||| ||| | |||||  |||| || || |||| ||||||||||||||| |  ||| |||| || |||||||||    
T  8433911 agagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctca 8433812  T
Q  237 aaatc 241  Q
    |||||    
T  8433811 aaatc 8433807  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 8416897 - 8416822
Alignment:
Q  137 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgta 212  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||| ||||    
T  8416897 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaaatgta 8416822  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 8405797 - 8405747
Alignment:
Q  33 aatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 83  Q
    ||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||    
T  8405797 aatacttttgaacatggtggacaagttggcatggtttttgaaatgtataga 8405747  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 55336151 - 55335978
Alignment:
Q  38 ttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattgaa 137  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| || | || | |||||   |||||   ||  ||||     
T  55336151 ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggattttttaagatgtttggagagagtattgaaagcacacttgag 55336052  T
Q  138 gagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgt 211  Q
    |||||||||||| | |||||||||||||||||| | ||||| ||||| || ||||||   || |||||||||||    
T  55336051 gagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaaaatggcattgatgttaggaagaagtgt 55335978  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 55330720 - 55330516
Alignment:
Q  37 cttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattga 136  Q
    ||||||| ||||| |||||| |||||||||| ||||| ||||||||||| |||||||||||  || |||| ||||||||||| |||||  ||||  | ||    
T  55330720 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacattgga 55330621  T
Q  137 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 236  Q
    ||||||||||||  | |  ||||||||||| ||| | ||||| ||||| || || |||   |||||||||| |||    ||||||||||||||||| |||    
T  55330620 agagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttgcttca 55330521  T
Q  237 aaatc 241  Q
    |||||    
T  55330520 aaatc 55330516  T

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Target: scaffold1738 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 25 - 129
Alignment:
Q  137 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 236  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||||||||   ||| |||| || ||||| |||    
T  25 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatca 124  T
Q  237 aaatc 241  Q
    |||||    
T  125 aaatc 129  T

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