View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_low_27 (Length: 288)
Name: NF6690_low_27
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 4116959 - 4117224
Alignment:
| Q |
14 |
acatcagacataaatatctatttgacgctctaaatatttggaaagacactgctgtttgctctgtcaaatcctttgaagctaaagctaacaaaccaaacgg |
113 |
Q |
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| T |
4116959 |
acatcagacataaatatctatttgacgctctaaatatttggaaagacactgctgtttcctctgtcaaatcctttgaagctaaagctaacaaaccaaacgg |
4117058 |
T |
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| Q |
114 |
tcctattttgccacttcttgatgcatgttgtttgctacatagtagttgaggatcaacttcactaggatcttctaaccagtcaccactttctagctcaggt |
213 |
Q |
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| T |
4117059 |
tcctattttgccacttcttgatgcatgttgtttgctacatagtagttgaggatcaacttcactaggatcttctaaccagtcaccactttctagctcaggt |
4117158 |
T |
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| Q |
214 |
agctcaaacaacacttctacatcaaccttaaagttcaaattggaaaatgattatcattgatgatgt |
279 |
Q |
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| T |
4117159 |
agctcaaacaacacttctacatcaaccttaaagttcaaattggaaaatgattatcattgatgatgt |
4117224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 245
Target Start/End: Original strand, 4136891 - 4137048
Alignment:
| Q |
85 |
tttgaagctaaagctaacaaaccaaacggtcctattttgccacttcttgatgcatgttgtttgctacatagtagttgaggatcaacttcactaggatctt |
184 |
Q |
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| T |
4136891 |
tttgatgctaaagcttgcaaaccaaatggtcctatcatgccatttcttgatgcatattgttctttacagagttcttgaggatcaacttcacttgg---tt |
4136987 |
T |
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| Q |
185 |
ctaaccagtcaccactttctagctcaggtagctcaaacaacacttctacatcaaccttaaa |
245 |
Q |
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| T |
4136988 |
ctagcaactcagcactttgtagattgggtagctcaaacaagacttccacatcagccttaaa |
4137048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 242
Target Start/End: Original strand, 4141803 - 4141951
Alignment:
| Q |
91 |
gctaaagctaacaaaccaaacggtcctattttgccacttcttgatgcatgttgtttgctacatagtagttgaggatcaacttcactaggatcttctaacc |
190 |
Q |
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||||||||| ||||||||| || ||||| |||| || ||||||||| ||||| |||| ||| |||||||||||||||||| || ||||| | |
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| T |
4141803 |
gctaaagcttgcaaaccaaatggccctatcatgccttttattgatgcatattgttctttacagagttcttgaggatcaacttcacttgg---ttctagca |
4141899 |
T |
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| Q |
191 |
agtcaccactttctagctcaggtagctcaaacaacacttctacatcaacctt |
242 |
Q |
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| T |
4141900 |
cctcagcactttctagatcaggtagctcaaacaagacttccacatcagcctt |
4141951 |
T |
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