View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_low_3 (Length: 563)
Name: NF6690_low_3
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_low_3 |
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| [»] scaffold0086 (2 HSPs) |
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Alignment Details
Target: scaffold0086 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 10 - 413
Target Start/End: Original strand, 25332 - 25730
Alignment:
| Q |
10 |
atgaaaaaagtagtaaatagtggcgagttggatataacacgttgtcaacgaggccatgtgaattgcaaatgatggtgtgagtgcaaatgacgaagattag |
109 |
Q |
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| T |
25332 |
atgaaaaaagtagtaaatagtggcgagttggatataacacgttgtcaacgaggccatgtgaattgcaaatgacggtgtgagtgcaaatgacgaagattag |
25431 |
T |
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| Q |
110 |
tgatatggatggatgtttggggtcgaaacgacgaagaaatgttaagatgaaatatccaccacaaaagttagacttataatcgaccgacctgtaaccgtta |
209 |
Q |
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| T |
25432 |
tgatatgg----atgtttggggttgaaacgacggagaaatgttaagatgaaatatccaccacaaaagttagacttataatcgactggcctgaaaccttta |
25527 |
T |
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| Q |
210 |
gtaagtttgaaattaccgacggcttgggtggtcggaataagcgtatgttttaattgacattattcatgacaatagaacaagtctttggttgacttaaaga |
309 |
Q |
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| T |
25528 |
gtaagtttgaaattactgacggcttgggtggtcggaataagcgtatgttttaattgacattattcatgacaatagaacaagtctttggttgacttaaaga |
25627 |
T |
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| Q |
310 |
caatagaagtgatttatatttgtatgattttattttataagcatgtttggagtaaaaacttgattaaagtttttcaactcagtgcaaaactacttttatc |
409 |
Q |
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| T |
25628 |
caatagaagtgatttatatttgtatgatttta-tttataagcatgtttggagtaaaaacttgatctaagtttttcaactcagtgcaaaactacttttatg |
25726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 429 - 545
Target Start/End: Original strand, 25696 - 25812
Alignment:
| Q |
429 |
tttttcaacttggtgcaaatactacttttatgacttttaaattgaccaatatttgaagacaaaacta-tatttttgtatggacataaactatttgacaaa |
527 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| |
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| T |
25696 |
tttttcaactcagtgcaaa-actacttttatgacttttaaattgaccaatatttgaagacaaaactattttttttgtatggacattaactatttgacaaa |
25794 |
T |
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| Q |
528 |
aaatacaatgcaaacaaa |
545 |
Q |
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| T |
25795 |
aaatacaatgcaaacaaa |
25812 |
T |
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