View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_low_30 (Length: 284)
Name: NF6690_low_30
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 11400361 - 11400626
Alignment:
| Q |
18 |
catcatactctttttctcggtttaaaatatttggtggattcctcttgtttgatcattgatgcatcttctgccattgatcagcttcctcgtcttgtcggag |
117 |
Q |
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| T |
11400361 |
catcatactctttttctcggtttaaaatatttggtggattcctcttgtttgatcattgatgcatcttctgccattgatcagcttcctcgtcttgtcggag |
11400460 |
T |
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| Q |
118 |
tctcgaatgcatgcaaaccactgcgcacagctgcctgcagcttctttccttcttcccatcaaaagcttgcagtttttatttttacttaaaagctttaagt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11400461 |
tctcgaatgcatgcaaaccactgcgcacagctgcctgcagcttctttccttcttcccatcaaaagcttgcagtttttatttttactttaaagctttaagt |
11400560 |
T |
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| Q |
218 |
tgtatccctaagtttatcagttattatctgataatatcagtcccacactcctcctccaacaccaaa |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11400561 |
tgtatccctaagtttatcagttattatctgataatatcagtcccacactcctcctccaaccccaaa |
11400626 |
T |
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