View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_low_31 (Length: 283)
Name: NF6690_low_31
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 31819818 - 31819569
Alignment:
| Q |
1 |
cttgtatcattggtcttaacacaatgtgatgatccaaactagcgagactcctcggcatggctcaagggtggtatcagagctcttgttcaacttggtggga |
100 |
Q |
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| T |
31819818 |
cttgtatcgttggtcttaacacaatgtgattatccaaactagtgagactcctcgtcatggctcaagggtggtatcagagctcttgttcaacttggtggga |
31819719 |
T |
|
| Q |
101 |
gggagcgagagagaatcataatgttggatcacagatgtagagagtcttatccttgagggagagatgatgagacatcttaagtttgagttaaagtctcaca |
200 |
Q |
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| T |
31819718 |
gggagcgagagagaatcataatgttggatcacagatgtagagagtcttatccttgagggagagatgatgtgacatgctaagtgtgagttaaagtctcaca |
31819619 |
T |
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| Q |
201 |
ttgaatgtaagtgctgaggttgaacaacatataattgagagaacccataa |
250 |
Q |
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| T |
31819618 |
ttgaatgtaagtgctgaggttgaacaacatataattgagagaatccataa |
31819569 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 250
Target Start/End: Complemental strand, 45668511 - 45668476
Alignment:
| Q |
215 |
tgaggttgaacaacatataattgagagaacccataa |
250 |
Q |
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| T |
45668511 |
tgaggttgaacaacatataattgagagaactcataa |
45668476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 17772577 - 17772650
Alignment:
| Q |
177 |
ttaagtttgagttaaagtctcacattgaatgtaagtgctgaggttgaacaacatataattgagagaacccataa |
250 |
Q |
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| T |
17772577 |
ttaagtgtgagttaaagtctcacatttgatggaagtgttaagattgagcaacatataaatgatagaactcataa |
17772650 |
T |
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