View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_low_34 (Length: 276)
Name: NF6690_low_34
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 9642650 - 9642393
Alignment:
| Q |
1 |
ttttacatgcatgaacctaatgaaatgatgaagcaaataaaataatgtaacatatattatatgaactacctatgagtttgttttgcaaatgatcaatctc |
100 |
Q |
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| T |
9642650 |
ttttacatgcatgaacctaatgaaatgatgaagcaaataaaatactgtaacatatattatatgaactacctatgagtttgttttgcaaatgatcaatctc |
9642551 |
T |
|
| Q |
101 |
caacacaacaacatctggtttgacaagaggaacctcttcattgacaaccattttcttctttcttggtaaattttctcaacaacaaatgaagtatgatcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9642550 |
caacacaacaacatctggtttgacaagaggaacctcttcattgacaaccattttcttctttcttggtaaattttctcaacaacaaatgaagtatgatcac |
9642451 |
T |
|
| Q |
201 |
tagtatatatagtatttttctttaggtgttctatttttgtgatggaaagtgcactatt |
258 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
9642450 |
tagtatatatagtatttttccttaggtgttctatttttgtgatggaaattgcactatt |
9642393 |
T |
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