View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6690_low_36 (Length: 258)

Name: NF6690_low_36
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6690_low_36
NF6690_low_36
[»] chr1 (18 HSPs)
chr1 (15-239)||(36402406-36402625)
chr1 (15-239)||(10896959-10897178)
chr1 (18-239)||(33243023-33243235)
chr1 (18-239)||(33263196-33263408)
chr1 (55-239)||(45318619-45318798)
chr1 (147-239)||(1928237-1928329)
chr1 (147-239)||(29208914-29209006)
chr1 (147-239)||(52705552-52705644)
chr1 (18-85)||(9832217-9832284)
chr1 (147-239)||(26882659-26882751)
chr1 (184-239)||(9831449-9831504)
chr1 (65-117)||(29209031-29209083)
chr1 (66-117)||(1928161-1928212)
chr1 (147-185)||(9831779-9831817)
chr1 (55-116)||(26882572-26882633)
chr1 (149-181)||(45535001-45535033)
chr1 (65-126)||(52705660-52705721)
chr1 (168-220)||(9191309-9191361)
[»] chr2 (13 HSPs)
chr2 (15-238)||(11534995-11535213)
chr2 (18-248)||(24193195-24193420)
chr2 (55-239)||(6289247-6289426)
chr2 (147-239)||(11998250-11998342)
chr2 (55-248)||(45547081-45547269)
chr2 (55-239)||(29941104-29941283)
chr2 (147-239)||(34028765-34028857)
chr2 (147-248)||(20157590-20157691)
chr2 (147-248)||(24193699-24193807)
chr2 (147-197)||(45485552-45485602)
chr2 (66-117)||(20157514-20157565)
chr2 (66-117)||(34028689-34028740)
chr2 (65-122)||(11998174-11998230)
[»] chr8 (20 HSPs)
chr8 (15-239)||(30382380-30382599)
chr8 (18-239)||(37567081-37567297)
chr8 (55-239)||(4302552-4302733)
chr8 (55-239)||(29260022-29260201)
chr8 (55-239)||(40265027-40265206)
chr8 (55-239)||(43605110-43605289)
chr8 (149-239)||(8502791-8502881)
chr8 (67-248)||(28619994-28620170)
chr8 (55-239)||(7148199-7148378)
chr8 (71-239)||(10802533-10802696)
chr8 (55-239)||(41386616-41386795)
chr8 (149-239)||(9457702-9457792)
chr8 (55-239)||(2112950-2113129)
chr8 (55-248)||(4655197-4655385)
chr8 (67-239)||(42275131-42275299)
chr8 (147-239)||(9209195-9209287)
chr8 (149-239)||(35142201-35142291)
chr8 (55-239)||(41965546-41965723)
chr8 (55-115)||(41965344-41965404)
chr8 (88-126)||(9457810-9457848)
[»] chr5 (6 HSPs)
chr5 (15-239)||(6828497-6828717)
chr5 (65-239)||(40410749-40410918)
chr5 (147-239)||(17518588-17518680)
chr5 (147-239)||(10571270-10571362)
chr5 (74-126)||(10571378-10571430)
chr5 (168-220)||(6902525-6902577)
[»] chr3 (26 HSPs)
chr3 (15-248)||(27593302-27593530)
chr3 (42-239)||(39338033-39338222)
chr3 (55-239)||(24150578-24150757)
chr3 (148-243)||(38682581-38682675)
chr3 (55-248)||(30588989-30589178)
chr3 (55-227)||(26005601-26005768)
chr3 (55-239)||(38629546-38629725)
chr3 (67-239)||(46251961-46252128)
chr3 (149-239)||(36786130-36786220)
chr3 (147-239)||(26005816-26005908)
chr3 (55-243)||(26293313-26293496)
chr3 (147-239)||(35731091-35731183)
chr3 (55-239)||(36054753-36054932)
chr3 (149-239)||(52024034-52024124)
chr3 (68-239)||(50900206-50900372)
chr3 (67-239)||(13662707-13662874)
chr3 (18-85)||(39337970-39338037)
chr3 (168-239)||(26555973-26556044)
chr3 (67-122)||(26556068-26556123)
chr3 (55-122)||(19551904-19551971)
chr3 (55-122)||(36786242-36786308)
chr3 (24-60)||(6783845-6783881)
chr3 (55-119)||(35731206-35731270)
chr3 (164-227)||(19551998-19552061)
chr3 (66-122)||(52023960-52024012)
chr3 (168-220)||(43151336-43151388)
[»] chr7 (13 HSPs)
chr7 (18-239)||(39300965-39301170)
chr7 (55-239)||(152017-152196)
chr7 (55-239)||(43057427-43057606)
chr7 (55-239)||(35089852-35090031)
chr7 (147-248)||(40097244-40097345)
chr7 (55-239)||(30110962-30111141)
chr7 (55-239)||(27418388-27418567)
chr7 (55-122)||(47914075-47914142)
chr7 (147-239)||(47914890-47914982)
chr7 (66-117)||(40097370-40097422)
chr7 (168-219)||(36355338-36355389)
chr7 (168-220)||(31494417-31494469)
chr7 (28-60)||(48545569-48545601)
[»] chr4 (19 HSPs)
chr4 (15-239)||(54509873-54510090)
chr4 (18-248)||(47685294-47685522)
chr4 (18-122)||(40144031-40144135)
chr4 (65-239)||(45332825-45332994)
chr4 (65-239)||(45340515-45340684)
chr4 (147-248)||(33450012-33450113)
chr4 (55-239)||(26336227-26336406)
chr4 (147-239)||(42720878-42720970)
chr4 (160-239)||(40143935-40144014)
chr4 (55-248)||(8583751-8583939)
chr4 (55-248)||(44930025-44930213)
chr4 (55-239)||(42218192-42218371)
chr4 (67-239)||(52109565-52109732)
chr4 (73-239)||(8880603-8880764)
chr4 (147-248)||(3435790-3435891)
chr4 (147-239)||(25935946-25936038)
chr4 (65-119)||(7820320-7820374)
chr4 (65-126)||(42720986-42721048)
chr4 (83-122)||(3435731-3435770)
[»] chr6 (10 HSPs)
chr6 (18-239)||(10643721-10643939)
chr6 (66-239)||(30878011-30878179)
chr6 (55-239)||(6476459-6476638)
chr6 (147-239)||(7858207-7858299)
chr6 (149-239)||(29834120-29834210)
chr6 (149-239)||(29865554-29865644)
chr6 (147-243)||(3110118-3110214)
chr6 (88-122)||(29834064-29834098)
chr6 (88-122)||(29865498-29865532)
chr6 (147-239)||(709073-709165)
[»] scaffold0016 (1 HSPs)
scaffold0016 (55-239)||(81528-81707)
[»] scaffold0237 (2 HSPs)
scaffold0237 (149-239)||(21248-21338)
scaffold0237 (88-122)||(21192-21226)
[»] scaffold0153 (1 HSPs)
scaffold0153 (55-239)||(34560-34739)
[»] scaffold0202 (2 HSPs)
scaffold0202 (65-122)||(16314-16373)
scaffold0202 (187-239)||(16415-16467)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 36402625 - 36402406
Alignment:
Q  15 aacaaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttag 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36402625 aacaaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctcaaagttatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttag 36402526  T
Q  115 taggtacaattttgaattttgaataccaatggacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaattttta 214  Q
    |||||||| |||  | |    | |  |     |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36402525 taggtacattttacactaaaaagtctc-----acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatagacaattttta 36402431  T
Q  215 agttgtgcaaaatttcaattgaata 239  Q
    ||||||||||||| |||||||||||    
T  36402430 agttgtgcaaaatctcaattgaata 36402406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 10897178 - 10896959
Alignment:
Q  15 aacaaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttag 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| ||||||||||||||    
T  10897178 aacaaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctcaaagctatgtgtgagagacaaaaaagtgtcaaggttaggtgtgagattgttag 10897079  T
Q  115 taggtacaattttgaattttgaataccaatggacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaattttta 214  Q
    ||||||| |||||  |||    | |    |  ||||||||||||||||| |||||||||||||||||||  ||||||||||||||||| |||||||||||    
T  10897078 taggtac-attttacatt----aaaatgtttcacaaaatccattactcataacaatccattaaaatcctaccaattttgaataccaatagacaattttta 10896984  T
Q  215 agttgtgcaaaatttcaattgaata 239  Q
    ||||| ||||||| |||||||||||    
T  10896983 agttgggcaaaatctcaattgaata 10896959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 33243023 - 33243235
Alignment:
Q  18 aaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtag 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    |||| |||||||||||||||||    
T  33243023 aaaaactgaagtgggagaaggagtaaaaagtctcaagaaatctcaaggctatgtgtgggagacaaaaaagtctc----ttaggtgtgagattgttagtag 33243118  T
Q  118 gtacaattttgaattttgaataccaatggacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagt 217  Q
    |||||||||  |   || || |    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33243119 gtacaatttaca---ttaaaaagt--ttcacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagt 33243213  T
Q  218 tgtgcaaaatttcaattgaata 239  Q
    ||| |||||| |||||||||||    
T  33243214 tgtacaaaatctcaattgaata 33243235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 33263196 - 33263408
Alignment:
Q  18 aaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtag 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    |||| |||||||||||||||||    
T  33263196 aaaaactgaagtgggagaaggagtaaaaagtctcaagaaatctcaaggctatgtgtgggagacaaaaaagtctc----ttaggtgtgagattgttagtag 33263291  T
Q  118 gtacaattttgaattttgaataccaatggacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagt 217  Q
    |||||||||  |   || || |    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33263292 gtacaatttaca---ttaaaaagt--ttcacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagt 33263386  T
Q  218 tgtgcaaaatttcaattgaata 239  Q
    ||| |||||| |||||||||||    
T  33263387 tgtacaaaatctcaattgaata 33263408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 45318798 - 45318619
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || |||||||||||| || ||||||||||||||||||| |||||||||||||||||||||| |||  | |    |||  ||     |||||||    
T  45318798 aaatctcaaggctatgtgtgggtgataaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctca-----caaaatc 45318704  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| || | |||||||||||| | ||||||||||||||| |||||||| |||||||||||    
T  45318703 cattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 45318619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 1928237 - 1928329
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  1928237 acaaaatccattactcataacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgcaaaatctgaattgaata 1928329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 29209006 - 29208914
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  29209006 acaaaatccattactcacaacaatccattaaaatccttagaactttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaata 29208914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 52705644 - 52705552
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||||||||||| || | |||||||||||| | ||||||||||||||| |||||||| |||||||||||    
T  52705644 acaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 52705552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 9832284 - 9832217
Alignment:
Q  18 aaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctgaaagctatgtgtgggagacaaaaa 85  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9832284 aaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctcaaagctatgtgtgggagacaaaaa 9832217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 26882659 - 26882751
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||||||||||  || | |||||||||||| | ||||||||||||||| |||||||| |||||||||||    
T  26882659 acaaaatccattactcacaacaatccattaaaatctgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 26882751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 9831504 - 9831449
Alignment:
Q  184 tacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||    
T  9831504 tacaattttgaataccaatagacaatttgtaagttgtgcaaaatctcaattgaata 9831449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 29209083 - 29209031
Alignment:
Q  65 gctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtag 117  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  29209083 gctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtag 29209031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 1928161 - 1928212
Alignment:
Q  66 ctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtag 117  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||||||||    
T  1928161 ctatgtgtgggagacaaaaaagtcacaaggctaggtgtgagattgttagtag 1928212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 9831817 - 9831779
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatcctta 185  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9831817 acaaaatccattactcacaacaatccattaaaatcctta 9831779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 26882572 - 26882633
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagta 116  Q
    |||||| || |||||||||||| || | ||||||||||||| ||| ||||||||||||||||    
T  26882572 aaatctcaaggctatgtgtgggtgatagaaaagtctcaaggctaggtgtgagattgttagta 26882633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 181
Target Start/End: Complemental strand, 45535033 - 45535001
Alignment:
Q  149 aaaatccattactcacaacaatccattaaaatc 181  Q
    |||||||||||||||||||||||||||||||||    
T  45535033 aaaatccattactcacaacaatccattaaaatc 45535001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 52705721 - 52705660
Alignment:
Q  65 gctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattt 126  Q
    ||||||||||||||| | |||||||| |||| |||  ||||||||||||||| ||||| |||    
T  52705721 gctatgtgtgggagatagaaaagtcttaaggctaggcgtgagattgttagtaagtacatttt 52705660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 9191361 - 9191309
Alignment:
Q  168 aatccattaaaatccttacaattttgaataccaatggacaatttttaagttgt 220  Q
    |||||||| |||||  |||| |||||||||||||  |||||||||||||||||    
T  9191361 aatccattgaaatcaatacatttttgaataccaagagacaatttttaagttgt 9191309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 11535213 - 11534995
Alignment:
Q  15 aacaaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttag 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  11535213 aacaaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctcaaagctatgtgtgggagacaaaaaagtctcaaggttatgtgtgagattgttag 11535114  T
Q  115 taggtacaattttgaattttgaataccaatggacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaattttta 214  Q
    |||||||| |||  | |    | |  |     |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11535113 taggtacattttacactaaaaagtctc-----acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatagacaattttta 11535019  T
Q  215 agttgtgcaaaatttcaattgaat 238  Q
    ||||||||||||| ||||||||||    
T  11535018 agttgtgcaaaatctcaattgaat 11534995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 24193195 - 24193420
Alignment:
Q  18 aaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtag 117  Q
    ||||| ||||||||||||||||||||||||||||||||||| | ||  |||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  24193195 aaaaactgaagtgggagaaggagtaaaaagtctcaagaaatttcaagactatgtgtgggagacaaaaaagtctcaaggttaagtgtgagattgttagtag 24193294  T
Q  118 gtacaattttgaattttgaataccaatggacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagt 217  Q
    ||||| |||  | |    | |  ||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24193295 gtacattttacactaaaaagtctca-----caaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagt 24193389  T
Q  218 tgtgcaaaatttcaattgaatatcacagaat 248  Q
    |||||||||| ||||||||||| ||| ||||    
T  24193390 tgtgcaaaatctcaattgaataccactgaat 24193420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 6289247 - 6289426
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||  | |    |||  ||     |||||||    
T  6289247 aaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctca-----caaaatc 6289341  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| || | |||||||||| |   ||||||||||||||| |||||||| |||||||||||    
T  6289342 cattactcacaacaatccattaaaatccgtagagttttgaatactagcagacaatttttaagttatgcaaaatctcaattgaata 6289426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 11998250 - 11998342
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  11998250 acaaaatccattactcacaacaaaccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaata 11998342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 55 - 248
Target Start/End: Complemental strand, 45547269 - 45547081
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||| |||  | |    |||  ||     |||||||    
T  45547269 aaatctcaaggctatgtgtgggagatataaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctca-----caaaatc 45547175  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaatatcacagaat 248  Q
    ||||||| |||||||||||||||||||| || | |||||||||||| | ||||||||||||||| ||| |||| ||||||||||| ||| ||||    
T  45547174 cattacttacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgctaaatctcaattgaataccactgaat 45547081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 29941283 - 29941104
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||| ||||||||| | ||||||||||||| ||| |||||||||||||||||||||| |||  | |    |||  ||     |||||||    
T  29941283 aaatctcaaggctatatgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctca-----caaaatc 29941189  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| || | |||||||||||| | ||||||||||||||| |||||||| |||||||||||    
T  29941188 cattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 29941104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 34028765 - 34028857
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    ||||||||||||||||  ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  34028765 acaaaatccattactcgtaacaatccattaaaatccttataattttgaataccaatagacaatttttaagttgtgcaaaatctgaattgaata 34028857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 20157590 - 20157691
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaatatcacaga 246  Q
    ||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| | ||||||||| ||| ||    
T  20157590 acaaaatccattactcataacaatctattaaaatccttagaattttgaataccaatagacaatatttaagttgtgcaaaatctgaattgaataccactga 20157689  T
Q  247 at 248  Q
    ||    
T  20157690 at 20157691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 24193807 - 24193699
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaa-------tccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    ||||||||||||||||||| |||||||||||||       | | || ||||||||||||||||  ||| ||||||||||||||||||| |||||||||||    
T  24193807 acaaaatccattactcacagcaatccattaaaaattaaaattcgtagaattttgaataccaataaacagtttttaagttgtgcaaaatctcaattgaata 24193708  T
Q  240 tcacagaat 248  Q
     ||| ||||    
T  24193707 ccaccgaat 24193699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 45485602 - 45485552
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaata 197  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||    
T  45485602 acaaaatccattactcacaacaatccattaaaatccatagaattttgaata 45485552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 20157514 - 20157565
Alignment:
Q  66 ctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtag 117  Q
    |||||||||||||||||||||||||||| | ||| |||||||||||||||||    
T  20157514 ctatgtgtgggagacaaaaaagtctcaaagctaggtgtgagattgttagtag 20157565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 34028689 - 34028740
Alignment:
Q  66 ctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtag 117  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||||||||||    
T  34028689 ctatgtgtggcagacaaaaaagtctcaaggctaggtgtgagattgttagtag 34028740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 11998174 - 11998230
Alignment:
Q  65 gctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtaca 122  Q
    |||||||||||||||||||||| |||||||| | | |||||||||||| |||| ||||    
T  11998174 gctatgtgtgggagacaaaaaaatctcaaggct-ggtgtgagattgttggtagataca 11998230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 30382380 - 30382599
Alignment:
Q  15 aacaaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttag 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30382380 aacaaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctcaaagttatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttag 30382479  T
Q  115 taggtacaattttgaattttgaataccaatggacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaattttta 214  Q
    |||||||| |||  | |    | |  |     |||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30382480 taggtacattttacactaaaaagtctc-----acaaaattgattactcacaacaatccattaaaatccttacaattttgaataccaatagacaattttta 30382574  T
Q  215 agttgtgcaaaatttcaattgaata 239  Q
    ||||||||||||| |||||||||||    
T  30382575 agttgtgcaaaatctcaattgaata 30382599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 37567081 - 37567297
Alignment:
Q  18 aaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtag 117  Q
    ||||| |||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37567081 aaaaactgaagtggaagaaggagtaaaaagtctcaagaaatcttaaggctatgtgtgggagacaaaaaagtctcaaggttaggtgtgagattgttagtag 37567180  T
Q  118 gtacaattttgaattttgaataccaatggacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagt 217  Q
     |||| |||   |   | || | |     |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  37567181 atacatttt---acactaaaaagc--ctcacaaaatccattactcacaacaattcattaaaatccgtacaattttgaataccaatagacaatttttaagt 37567275  T
Q  218 tgtgcaaaatttcaattgaata 239  Q
    |||||||||| |||||||||||    
T  37567276 tgtgcaaaatctcaattgaata 37567297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 4302552 - 4302733
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaa--gtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaa 152  Q
    |||||| || ||||||||||||||||||||||  ||||||||| ||| |||||||||||||||||||||| |||  | |    || |    | | | |||    
T  4302552 aaatctcaaggctatgtgtgggagacaaaaaaatgtctcaaggctaggtgtgagattgttagtaggtacattttacact----aaaaagtctcg-ctaaa 4302646  T
Q  153 tccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||    
T  4302647 tccattactcacaacaatccattaaaatccttacaattttgaatactaatagacaatttttaagttgtgcaaaatctcaattgaata 4302733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 29260022 - 29260201
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||||||||||||| | ||||||||||||||||| |||||||||||||||| ||||| |||  | |    |||  ||     |||||||    
T  29260022 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggttaggtgtgagattgttagtacgtacattttacactaaacaatctca-----caaaatc 29260116  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| || | |||||||||||| | ||||||||||||||| |||||||| |||||||||||    
T  29260117 cattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 29260201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 40265027 - 40265206
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || |||| |||||||||| | ||||||||||||| ||| |||||||||||||||||||||| |||  | |    |||  ||     |||||||    
T  40265027 aaatctaaaggctacgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctca-----caaaatc 40265121  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| || | |||||||||||| | ||||||||||||||| |||||||| |||||||||||    
T  40265122 cattactcacaacaatccattaaaatccatagagttttgaataccattagacaatttttaagttatgcaaaatctcaattgaata 40265206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 43605110 - 43605289
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| ||||  |||    | || |    ||||||||    
T  43605110 aaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttagtaagtaca-ttttacatt----aaacaatctcacaaaatc 43605204  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| || | |||||||||| |   ||||||||||||||| ||| |||| |||||||||||    
T  43605205 cattactcacaacaatccattaaaatccgtagagttttgaatactagcagacaatttttaagttatgcgaaatctcaattgaata 43605289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 8502881 - 8502791
Alignment:
Q  149 aaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||||||||| || |||||| ||||||||| |||||||||||||||||||||||| | |||||||||    
T  8502881 aaaatccattactcacaacaatccattaaaatccgtagaattttaaataccaatagacaatttttaagttgtgcaaaatcttaattgaata 8502791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 67 - 248
Target Start/End: Complemental strand, 28620170 - 28619994
Alignment:
Q  67 tatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatgg-acaaaatccattactcaca 165  Q
    ||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||   ||| |  || ||   ||||   ||||| | |||||||||||    
T  28620170 tatgtgtgggagacagaaaagtctcaagattaggtgtgagattgttagtaggtaca---ttgtacattaaa---caatctcacaaagttcattactcaca 28620077  T
Q  166 acaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaatatcacagaat 248  Q
    ||||||||||||||||| || | |||||||||||| | ||||||||||||||| |||||||| ||||||||||| ||| ||||    
T  28620076 acaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaataccactgaat 28619994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 7148378 - 7148199
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||||||||||||| | ||||||||||||| ||| |||||||||||||||||||||| |||  | |    |||  ||     |||||||    
T  7148378 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctca-----caaaatc 7148284  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| || | |||||||| ||| | |||||||| |||||| |||||||| |||||||||||    
T  7148283 cattactcacaacaatccattaaaatccgtagagttttgaatgccagtagacaatttctaagttatgcaaaatctcaattgaata 7148199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 239
Target Start/End: Original strand, 10802533 - 10802696
Alignment:
Q  71 tgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatccattactcacaacaat 170  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |||  | |    |||  ||     |||||||||||||||||||||||    
T  10802533 tgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctca-----caaaatccattactcacaacaat 10802627  T
Q  171 ccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||| || | |||||||||| | | ||||||||||||||| |||||||| |||||||||||    
T  10802628 ccattaaaatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaata 10802696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 41386616 - 41386795
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||||||||||||| | ||||||||||||| ||| |||||||||||||||||||||| |||  | |    |||  ||      ||||||    
T  41386616 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctcat-----aaaatc 41386710  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| || | |||||||||| | | ||||||||||||||| |||||||| |||||||||||    
T  41386711 cattactcacaacaatccattaaaatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaata 41386795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 9457792 - 9457702
Alignment:
Q  149 aaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||||||||| || | ||||||||||| || ||||||||||||||| |||||||| |||||||||||    
T  9457792 aaaatccattactcacaacaatccattaaaatccgtagagttttgaataccgatagacaatttttaagttatgcaaaatctcaattgaata 9457702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 2113129 - 2112950
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||| ||||||||||| ||||||||||| | ||| ||||||||||| |||||||||| |||  | |     | || |    ||||||||    
T  2113129 aaatctcaaggctatatgtgggagacagaaaagtctcaatgctaggtgtgagattgtcagtaggtacattttacact-----aaacaatctcacaaaatc 2113035  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| || | |||||||||||| | ||||||||||||||| ||| |||| |||||||||||    
T  2113034 cattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcgaaatctcaattgaata 2112950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 248
Target Start/End: Complemental strand, 4655385 - 4655197
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || |||||||||| |||| | ||||||||||||| ||| |||||||||||||||| ||||| |||  | |     | || |    ||||||||    
T  4655385 aaatctcaaggctatgtgtgagagatagaaaagtctcaaggctaggtgtgagattgttagtatgtacattttacact-----aaacaatctcacaaaatc 4655291  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaatatcacagaat 248  Q
    ||||||||| |||||||||||||||||| || | |||||||||||  | ||||||||||||||| |||||||| ||||||||||| ||| ||||    
T  4655290 cattactcataacaatccattaaaatccgtagagttttgaataccggtagacaatttttaagttatgcaaaatctcaattgaataccactgaat 4655197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 239
Target Start/End: Complemental strand, 42275299 - 42275131
Alignment:
Q  67 tatgtgtgggagacaaaaaagtctcaaggttagatgtgagattg-ttagtaggtacaattttgaattttgaataccaatggacaaaatccattactcaca 165  Q
    ||||||||||||||| ||||||||||||| ||| |||||||||| |||||||||||| |||  | |    |||  ||     ||||||||||||||||||    
T  42275299 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattggttagtaggtacattttacactaaacaatctca-----caaaatccattactcaca 42275205  T
Q  166 acaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    ||||||||| ||||||| || | |||||||||| | | ||||||||||||||| |||||||| |||||||||||    
T  42275204 acaatccataaaaatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaata 42275131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 9209287 - 9209195
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||  ||||| |||||||| | ||||||||||||| | |||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  9209287 acaaaataaattacccacaacaaactattaaaatccttagagttttgaataccaatagacaatttttaagttgtccaaaatttcaattgaata 9209195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 35142291 - 35142201
Alignment:
Q  149 aaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    ||||||||||||||||||||||| | |||||||| ||  ||||||||||||||| ||||||||||||||||| |||||| | |||||||||    
T  35142291 aaaatccattactcacaacaatctaataaaatccgtaatattttgaataccaatagacaatttttaagttgtacaaaatcttaattgaata 35142201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 41965546 - 41965723
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||||||||||||| | ||||||||||||| ||| || ||||||||||||||||||| |||  | |    |||  ||     |||||||    
T  41965546 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgcgagattgttagtaggtacattttacactaaataatctca-----caaaatc 41965640  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    ||||||||||||||||||||||||||   || | |||||||||||| | |||||  |||||||| |||||||| |||||||||||    
T  41965641 cattactcacaacaatccattaaaatatgtagagttttgaataccagtagacaa--tttaagttatgcaaaatctcaattgaata 41965723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 41965344 - 41965404
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagt 115  Q
    |||||| || ||||||||||||||| | ||||||||||||| ||| || ||||||||||||    
T  41965344 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgcgagattgttagt 41965404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 9457848 - 9457810
Alignment:
Q  88 tctcaaggttagatgtgagattgttagtaggtacaattt 126  Q
    |||||||||||| |||||||||||||||||||||| |||    
T  9457848 tctcaaggttaggtgtgagattgttagtaggtacatttt 9457810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 8e-70; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 6828497 - 6828717
Alignment:
Q  15 aacaaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctgaaagctatgtgtgggagac-aaaaaagtctcaaggttagatgtgagattgtta 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6828497 aacaaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctcaaagctatgtgtgggagacaaaaaaagtctcaaggttagatgtgagattgtta 6828596  T
Q  114 gtaggtacaattttgaattttgaataccaatggacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaattttt 213  Q
    ||||||||| |||  | |    | |  |     ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  6828597 gtaggtacattttacactaaaaagtctc-----acaaaatccattactcataacaatccattaaaatccttacaattttgaatatcaatagacaattttt 6828691  T
Q  214 aagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||| |||||||||||    
T  6828692 aagttgtgcaaaatctcaattgaata 6828717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 239
Target Start/End: Complemental strand, 40410918 - 40410749
Alignment:
Q  65 gctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatccattactcac 164  Q
    ||||||||||||||| | ||||||||||||  ||| |||||||||||||||||||||| |||  | |    |||  ||     |||||||||||||||||    
T  40410918 gctatgtgtgggagatagaaaagtctcaagtctaggtgtgagattgttagtaggtacattttacactaaacaatctca-----caaaatccattactcac 40410824  T
Q  165 aacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||| || | |||||||||| | | ||||||||||||||| |||||||| |||||||||||    
T  40410823 aacaatccattaaaatccgtagagttttgaatacgagtagacaatttttaagttatgcaaaatctcaattgaata 40410749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 17518680 - 17518588
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||| ||||| ||||||||||||| || |||||||||| |||||  ||||||||||||||||||||||| | |||||||||    
T  17518680 acaaaatccattactcgcaacattccattaaaatccgtagaattttgaatcccaataaacaatttttaagttgtgcaaaatcttaattgaata 17518588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 10571362 - 10571270
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||| || ||||||||| |||||| | | || |||||||||||||||| ||||||||||||||||| |||||| | |||||||||    
T  10571362 acaaaatccattcctgacaacaatctattaaatttcatagaattttgaataccaatagacaatttttaagttgtacaaaatcttaattgaata 10571270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 10571430 - 10571378
Alignment:
Q  74 gggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattt 126  Q
    |||||||| |||||||| |||||||| |||||||||||||||| ||||| |||    
T  10571430 gggagacagaaaagtcttaaggttaggtgtgagattgttagtatgtacatttt 10571378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 6902525 - 6902577
Alignment:
Q  168 aatccattaaaatccttacaattttgaataccaatggacaatttttaagttgt 220  Q
    |||||||| |||||  |||| |||||||||||||  |||||||||||||||||    
T  6902525 aatccattgaaatcaatacatttttgaataccaagagacaatttttaagttgt 6902577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 27593530 - 27593302
Alignment:
Q  15 aacaaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttag 114  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  27593530 aacaaaaaatgaagtgggagaatgagtaaaaagtctcaagaaatctcaaagctatgtgttggagacaaaaaagtctcaaggttaggtgtgagattgttag 27593431  T
Q  115 taggtacaattttgaattttgaataccaatggacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaattttta 214  Q
    |||||||| |||  | |    | |  |     |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27593430 taggtacattttacactaaaaagtctc-----acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatagacaattttta 27593336  T
Q  215 agttgtgcaaaatttcaattgaatatcacagaat 248  Q
    || |||||||||  ||||||||||| ||| ||||    
T  27593335 agatgtgcaaaacctcaattgaataccactgaat 27593302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 39338033 - 39338222
Alignment:
Q  42 aaaaagtctcaagaaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaatacc 141  Q
    |||||||||||| ||||||||| ||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||  | |       |      
T  39338033 aaaaagtctcaataaatctgaaggctatttgtgggagacaaaaa-gtctcaaggttaggtgtgagattgttagtaggtacattttacact-------aaa 39338124  T
Q  142 aatggacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    ||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  39338125 aagtctcaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaata 39338222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 24150578 - 24150757
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||||||||||||| | ||||||||||||| ||| |||||||||||||||||||||| |||  | |    |||  ||     |||||||    
T  24150578 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctca-----caaaatc 24150672  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| || | |||||||||||| ||||||||||||||||| |||||||| |||||||||||    
T  24150673 cattactcacaacaatccattaaaatccgtagagttttgaataccagtggacaatttttaagttatgcaaaatctcaattgaata 24150757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 38682675 - 38682581
Alignment:
Q  148 caaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaatatcac 243  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||    
T  38682675 caaaatccattactcacaacaatccattaaaatccgtagaattttgaataccaat-aacaatttttaagttgtgcaaaatctcaattgaatatcac 38682581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 55 - 248
Target Start/End: Complemental strand, 30589178 - 30588989
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaa-gtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaat 153  Q
    ||||||||| |||||||||||| || |||||| ||||||||||||| |||||||||||||||||||||| |||  | |    |||  ||     ||||||    
T  30589178 aaatctgaaggctatgtgtgggtgataaaaaaagtctcaaggttaggtgtgagattgttagtaggtacattttacactaaacaatctca-----caaaat 30589084  T
Q  154 ccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaatatcacagaat 248  Q
    ||||||||||||||||||||||||||||| || | |||||||||||| | ||||||||||||||| ||| |||| ||||||||||| ||| ||||    
T  30589083 ccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgctaaatctcaattgaataccactgaat 30588989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 55 - 227
Target Start/End: Original strand, 26005601 - 26005768
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||||||||||||| | ||||||||||||| ||| |||||||||||||||||||||| |||  | |    |||  ||     |||||||    
T  26005601 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctca-----caaaatc 26005695  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaat 227  Q
    |||||||||||||||||||||||||||| || | |||||||||||||| ||||||||||||||| ||||||||    
T  26005696 cattactcacaacaatccattaaaatccgtagagttttgaataccaatagacaatttttaagttatgcaaaat 26005768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 38629546 - 38629725
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||||||||||||| | |||| |||||||| ||| |||||||||||||||||||||| |||  | |    |||  ||     |||||||    
T  38629546 aaatctcaaggctatgtgtgggagatagaaaaatctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctca-----caaaatc 38629640  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| || | |||||||||||| | ||||||||||||||| |||||||| |||||||||||    
T  38629641 cattactcacaacaatccattaaaatccgtatagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 38629725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 67 - 239
Target Start/End: Original strand, 46251961 - 46252128
Alignment:
Q  67 tatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatccattactcacaa 166  Q
    ||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |||  | |    |||  ||     |||||||||||||||||||    
T  46251961 tatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctca-----caaaatccattactcacaa 46252055  T
Q  167 caatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||| || | ||||||||||||   ||||||||||||||| |||||||| |||||||||||    
T  46252056 caatccattaaaatccgtaaagttttgaataccagcagacaatttttaagttatgcaaaatctcaattgaata 46252128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 36786220 - 36786130
Alignment:
Q  149 aaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||||| |||||||||||    
T  36786220 aaaatccattactcacaacaattcattaaaatccttacaattttgaataccaatagacaagtttaaagttttgcaaaatctcaattgaata 36786130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 26005816 - 26005908
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||||||||||| || | |||||||||||| | ||||||||||||||| |||||||| |||||||||||    
T  26005816 acaaaatccattactcacaacaatccattaaaatccatagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 26005908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 243
Target Start/End: Original strand, 26293313 - 26293496
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||||||||||||||| |||||||||||| |||| |||||| ||||||||||||||| |||  | |    |||  ||     |||||||    
T  26293313 aaatctcaaggctatgtgtgggagacagaaaagtctcaagattaggtgtgaggttgttagtaggtacattttacactaaacaatcaca-----caaaatc 26293407  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaatatcac 243  Q
    |||||||||||||||||||||||||||| || | |||||||||| | |  |||||||||||||| |||||||| |||||| ||||||||    
T  26293408 cattactcacaacaatccattaaaatccgtagagttttgaatactagtaaacaatttttaagttatgcaaaatctcaattaaatatcac 26293496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 35731183 - 35731091
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||||||||||| || | |||||||||||| | ||||||||||||||| |||||||| |||||||||||    
T  35731183 acaaaatccattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 35731091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 36054753 - 36054932
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| |||  | |    |||  ||     |||||||    
T  36054753 aaatctcaaggctatgtgtgggagacaaaaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaaacaatctca-----caaaatc 36054847  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| || | ||||||| || |   ||||||||||||||| |||||||| |||||||||||    
T  36054848 cattactcacaacaatccattaaaatccgtagagttttgaaaactagcagacaatttttaagttatgcaaaatctcaattgaata 36054932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 52024034 - 52024124
Alignment:
Q  149 aaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||||||||| || |||||||| ||| ||| |||||||||||| ||||||||||| |||||||||||    
T  52024034 aaaatccattactcacaacaatccattaaaatccgtagaattttgattactaatagacaatttttaaattgtgcaaaatctcaattgaata 52024124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 239
Target Start/End: Original strand, 50900206 - 50900372
Alignment:
Q  68 atgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatccattactcacaac 167  Q
    |||||||||||| | ||||||||||||| ||| |||||||||||||||| ||||| ||||  |||    | || |    |||||||||||||||||||||    
T  50900206 atgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtatgtaca-ttttacatt----aaacaatctcacaaaatccattactcacaac 50900300  T
Q  168 aatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    ||||||||||||||  || | |||||||||||| | ||||||||||||||| |||||||| ||||| |||||    
T  50900301 aatccattaaaatctctagagttttgaataccagtagacaatttttaagttatgcaaaatctcaatcgaata 50900372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 67 - 239
Target Start/End: Complemental strand, 13662874 - 13662707
Alignment:
Q  67 tatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatccattactcacaa 166  Q
    |||||||||||| || ||||||||||||| ||| |||||||||||||||||||||| |||  | |    |||  ||     |||||||||||||||||||    
T  13662874 tatgtgtgggaggcagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctca-----caaaatccattactcacaa 13662780  T
Q  167 caatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    ||||||||||||| || ||   |||||||||| | | ||||||||||||||||||| |||| |||||||||||    
T  13662779 caatccattaaaacccgtagtgttttgaatacgagtagacaatttttaagttgtgcgaaatctcaattgaata 13662707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 39337970 - 39338037
Alignment:
Q  18 aaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctgaaagctatgtgtgggagacaaaaa 85  Q
    ||||| ||||||||||||| |||||||||||||||| |||||| || ||||| |||||||||||||||    
T  39337970 aaaaactgaagtgggagaaagagtaaaaagtctcaataaatctcaaggctatttgtgggagacaaaaa 39338037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 26556044 - 26555973
Alignment:
Q  168 aatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    ||||||||||||||| || | |||||||||||  | ||||||||||||||| |||||||| |||||||||||    
T  26556044 aatccattaaaatccgtagagttttgaatacccgtagacaatttttaagttatgcaaaatctcaattgaata 26555973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 26556123 - 26556068
Alignment:
Q  67 tatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtaca 122  Q
    ||||||||||||| | ||||||||||||| ||| ||||||||||||||||||||||    
T  26556123 tatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtaca 26556068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 19551904 - 19551971
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtaca 122  Q
    |||||| || ||||| ||||||||| | ||||||||||||| ||| ||||||||||||| ||||||||    
T  19551904 aaatctcaaggctatatgtgggagaaagaaaagtctcaaggctaggtgtgagattgttattaggtaca 19551971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 36786308 - 36786242
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtaca 122  Q
    |||||| || |||||||||| ||||||||||||||||||||  || |||| |||||||||||||||||    
T  36786308 aaatctcaaggctatgtgtgagagacaaaaaagtctcaagg-caggtgtgtgattgttagtaggtaca 36786242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 6783845 - 6783881
Alignment:
Q  24 tgaagtgggagaaggagtaaaaagtctcaagaaatct 60  Q
    ||||||||||||||||||||||||||| |||||||||    
T  6783845 tgaagtgggagaaggagtaaaaagtcttaagaaatct 6783881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 35731270 - 35731206
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggt 119  Q
    |||||| || ||||||||||||||| | ||||||||||| | ||| |||||||||||||| ||||    
T  35731270 aaatctcaaggctatgtgtgggagatagaaaagtctcaatgctaggtgtgagattgttagcaggt 35731206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 19551998 - 19552061
Alignment:
Q  164 caacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaat 227  Q
    |||||||| |||||||||  || | |||||||||||| | ||||||||||||||| ||||||||    
T  19551998 caacaatcaattaaaatctgtagagttttgaataccactagacaatttttaagttatgcaaaat 19552061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 52023960 - 52024012
Alignment:
Q  66 ctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtaca 122  Q
    |||||||||||||||||||||||||    ||||| ||||||||||||| ||||||||    
T  52023960 ctatgtgtgggagacaaaaaagtct----gttaggtgtgagattgttactaggtaca 52024012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 43151388 - 43151336
Alignment:
Q  168 aatccattaaaatccttacaattttgaataccaatggacaatttttaagttgt 220  Q
    ||||||||||||||  || | |||| |||||||| ||||||||||||||||||    
T  43151388 aatccattaaaatctatatatttttaaataccaaaggacaatttttaagttgt 43151336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 7e-58; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 39300965 - 39301170
Alignment:
Q  18 aaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctgaaagctatgtgtgggagacaaaaaa-gtctcaaggttagatgtgagattgttagta 116  Q
    ||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| ||||||||||||| ||||||||||||||||    
T  39300965 aaaaactgaagtgggagaaggagtaaaaagtctcaagaaatctcaaggctatatgtgggagacaaaaaaagtctcaaggttaggtgtgagattgttagta 39301064  T
Q  117 ggtacaattttgaattttgaataccaatggacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaag 216  Q
    |||||| ||||  |||                ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  39301065 ggtaca-ttttacatt----------------aaaatccattactcacaacaatctattaaaatccttacaattttgaataccaatagacaatttttaag 39301147  T
Q  217 ttgtgcaaaatttcaattgaata 239  Q
    ||||||||||| |||||||||||    
T  39301148 ttgtgcaaaatctcaattgaata 39301170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 152196 - 152017
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||||||||||||| | ||||||||||||| ||| |||||||||||||||||||||| |||  | |    |||  ||     |||||||    
T  152196 aaatctaaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctca-----caaaatc 152102  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| || | |||||||||||| | ||||||||||||||| |||||||| |||||||||||    
T  152101 cattactcacaacaatccattaaaatccgtagagttttgaataccattagacaatttttaagttatgcaaaatctcaattgaata 152017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 43057427 - 43057606
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||||||||||||| | ||||||||||||| ||| |||||||||||||||||||||| |||  | |    |||  ||     |||||||    
T  43057427 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctca-----caaaatc 43057521  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| || | |||||||||||| | ||||||||||||||| |||||||| |||||||||||    
T  43057522 cattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 43057606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 35089852 - 35090031
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatgg-acaaaat 153  Q
    |||||| || ||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||| |||   ||    ||   ||||   |||||||    
T  35089852 aaatctcaaggctatgtgtgggagatagaaaagtctcaaggttaggtgtgagattgttagtaggtacatttt---ataccaaa---caatctcacaaaat 35089945  T
Q  154 ccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
     |||||||||||||||||||||||||||| || | |||||||||||| | ||||||||||||||| |||||||| |||||||||||    
T  35089946 tcattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatctcaattgaata 35090031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 40097345 - 40097244
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaatatcacaga 246  Q
    ||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||||||| ||| ||    
T  40097345 acaaaatccattagtcataacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgcaaaatctgaattgaataccactga 40097246  T
Q  247 at 248  Q
    ||    
T  40097245 at 40097244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 30111141 - 30110962
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| |||  | |    |||  ||     |||||||    
T  30111141 aaatctcaaggctatgtgtgggagacaaaaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaaacaatctca-----caaaatc 30111047  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| || | |||||||||  |   ||||||||||||||| |||||||| |||||||||||    
T  30111046 cattactcacaacaatccattaaaatccgtagagttttgaataatagcagacaatttttaagttatgcaaaatctcaattgaata 30110962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 27418388 - 27418567
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||| |||||||||||| |||||||||||||||||| ||||||||||||| ||| |||| |||  | |    |||  ||     |||||||    
T  27418388 aaatctcaaggctttgtgtgggagaccaaaaagtctcaaggttaggtgtgagattgttaatagatacattttacactaaacaatctca-----caaaatc 27418482  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| || | |||||| ||| |   ||||||||||||||| |||||||| |||||||||||    
T  27418483 cattactcacaacaatccattaaaatccgtagagttttgattactagcagacaatttttaagttatgcaaaatctcaattgaata 27418567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 47914075 - 47914142
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtaca 122  Q
    |||||| || ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  47914075 aaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttagtaggtaca 47914142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 47914890 - 47914982
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| ||||||  || | |||||||||| |   ||||||||||||||| |||||||| |||||||||||    
T  47914890 acaaaatccattactcacaacaatccataaaaatctgtagagttttgaatactagcagacaatttttaagttatgcaaaatctcaattgaata 47914982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 40097422 - 40097370
Alignment:
Q  66 ctatgtgtgggagacaaaaaa-gtctcaaggttagatgtgagattgttagtag 117  Q
    ||||||||||||||||||||| ||||||| | ||| |||||||||||||||||    
T  40097422 ctatgtgtgggagacaaaaaaagtctcaaagctaggtgtgagattgttagtag 40097370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 36355338 - 36355389
Alignment:
Q  168 aatccattaaaatccttacaattttgaataccaatggacaatttttaagttg 219  Q
    ||||||||||||||  |||| ||||||||| ||| |||||||||||||||||    
T  36355338 aatccattaaaatctatacatttttgaataacaaaggacaatttttaagttg 36355389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 31494469 - 31494417
Alignment:
Q  168 aatccattaaaatccttacaattttgaataccaatggacaatttttaagttgt 220  Q
    ||||||||||||||  |||| |||| ||||||||  |||||||||||||||||    
T  31494469 aatccattaaaatcaatacattttttaataccaagagacaatttttaagttgt 31494417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 48545569 - 48545601
Alignment:
Q  28 gtgggagaaggagtaaaaagtctcaagaaatct 60  Q
    |||||||||||||||||| ||||||||||||||    
T  48545569 gtgggagaaggagtaaaatgtctcaagaaatct 48545601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 54510090 - 54509873
Alignment:
Q  15 aacaaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctgaaagctatgtgtgggagacaa-aaaagtctcaaggttagatgtgagattgtta 113  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  54510090 aacaaaaaatgaagtgggagaatgagtaaaaagtctcaagaaatctcaaagctatgtgtgggagacaaaaaaagcctcaaggttaggtgtgagattgtta 54509991  T
Q  114 gtaggtacaattttgaattttgaataccaatggacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaattttt 213  Q
    ||||||||| |||  | |    | |  |     |||||||||||   ||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  54509990 gtaggtacattttacactaaaaagtctc-----acaaaatccat---tcataacaatccattaaaatccttacaattttgaataccaatagacaattttt 54509899  T
Q  214 aagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||| |||||||||||    
T  54509898 aagttgtgcaaaatctcaattgaata 54509873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 47685522 - 47685294
Alignment:
Q  18 aaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctga---aagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttag 114  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |   | |||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  47685522 aaaaactgaagtgggagaaggagtaaaaagtctcaagaaatctcatcaaggctatgtgtgggagacaaaaaagtctcaagtttaggtgtgagattgttag 47685423  T
Q  115 taggtacaattttgaattttgaataccaatggacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaattttta 214  Q
    |||||||| |||  | |    || |    | | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  47685422 taggtacattttacact----aaaaagtctcg-caaaatctattactcacaacaatccattaaaatccttacaattttgaataccaatagacaattttta 47685328  T
Q  215 agttgtgcaaaatttcaattgaatatcacagaat 248  Q
    ||||| ||||||| ||||||||||| ||| ||||    
T  47685327 agttgagcaaaatctcaattgaataccactgaat 47685294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 40144135 - 40144031
Alignment:
Q  18 aaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtag 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  40144135 aaaaactgaagtgggagaaggagtaaaaagtctcaagaaatctcaaggctatgtgtgggagacaaaaaagtctcaaggttaagtgtgagattgttagtag 40144036  T
Q  118 gtaca 122  Q
    |||||    
T  40144035 gtaca 40144031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 239
Target Start/End: Complemental strand, 45332994 - 45332825
Alignment:
Q  65 gctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatccattactcac 164  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||| |||| |||| |||  | |     | |    |  | ||||||||||||||||    
T  45332994 gctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacact-----aaaaagtttcataaaatccattactcac 45332900  T
Q  165 aacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  45332899 aacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaata 45332825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 239
Target Start/End: Complemental strand, 45340684 - 45340515
Alignment:
Q  65 gctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatccattactcac 164  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||| |||| |||| |||  | |     | |    |  | ||||||||||||||||    
T  45340684 gctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacact-----aaaaagtttcataaaatccattactcac 45340590  T
Q  165 aacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  45340589 aacaatccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaata 45340515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 33450012 - 33450113
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaatatcacaga 246  Q
    |||||||||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||| ||    
T  33450012 acaaaatccattactcacaataatccattaaaatccgtagaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaataccaccga 33450111  T
Q  247 at 248  Q
    ||    
T  33450112 at 33450113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 26336406 - 26336227
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||||||||||||||||||||||||||||| ||| |||||||||||| |||| |||| |||  | |    | |  ||     |||||||    
T  26336406 aaatctcaaggctatgtgtgggagacaaaaaagtctcaaggctaggtgtgagattgttggtagatacattttacactaaaaagtctca-----caaaatc 26336312  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||  ||||||||||||||||| ||||| |||||||||||    
T  26336311 cattactcacaataatccattaaaatccttagaattttgaataccaataaacaatttttaagttgtgtaaaatctcaattgaata 26336227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 42720970 - 42720878
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  42720970 acaaaatccattactcacaacaacccattaaaatccttagaattttgaataccaatagacaatttttaagttgtgtaaaatctcaattgaata 42720878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 40144014 - 40143935
Alignment:
Q  160 ctcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  40144014 ctcacaacaatccattaaaattcttacaattttgaataccaatagacaatttttaagttgtgcaaaatctcaattgaata 40143935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 55 - 248
Target Start/End: Original strand, 8583751 - 8583939
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||||||| ||||| | ||||||||||||| ||| |||||||||||||||||||||| |||  | |    |||  ||     ||||||     
T  8583751 aaatctcaaggctatgtgttggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctca-----caaaatt 8583845  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaatatcacagaat 248  Q
    |||||||||||||||||||||||||||| || | |||||||||||| | ||||||||||||||| |||||||| | ||||||||| ||| ||||    
T  8583846 cattactcacaacaatccattaaaatccgtagagttttgaataccagtagacaatttttaagttatgcaaaatcttaattgaataccactgaat 8583939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 55 - 248
Target Start/End: Complemental strand, 44930213 - 44930025
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||||||||||||| | |||| |||||||| ||| |||||||||||||||||||||| |||  | |    |||  ||     |||||||    
T  44930213 aaatctcaaggctatgtgtgggagatagaaaaatctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctca-----caaaatc 44930119  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaatatcacagaat 248  Q
    | |||||||||||||||||||||||||| || | |||||||||||  | ||||||||||||||| |||||||| ||||||||||| ||| ||||    
T  44930118 ctttactcacaacaatccattaaaatccgtagagttttgaatacccgtagacaatttttaagttatgcaaaatctcaattgaataccactgaat 44930025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 42218192 - 42218371
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||||||| ||||| | ||||||||||||| ||| |||||||||||||||||||||| |||  | |    |||  ||     ||||||     
T  42218192 aaatctcaaggctatgtgtaggagatagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctca-----caaaatt 42218286  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| || | ||||||||| || | ||||||||||||||| |||||||| |||||||||||    
T  42218287 cattactcacaacaatccattaaaatccgtagagttttgaatatcagtagacaatttttaagttatgcaaaatctcaattgaata 42218371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 239
Target Start/End: Complemental strand, 52109732 - 52109565
Alignment:
Q  67 tatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatccattactcacaa 166  Q
    ||||||||||||||| ||||||||||||| ||| |||| ||||||||||||||||| ||||  |||    | || |    ||||||||||||||||||||    
T  52109732 tatgtgtgggagacagaaaagtctcaaggctaggtgtgggattgttagtaggtaca-ttttacatt----aaacaatctcacaaaatccattactcacaa 52109638  T
Q  167 caatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||| || | ||||||||| |  |  |||||||||||||| |||||||| |||||||||||    
T  52109637 caatccattaaaatccgtagagttttgaatatcggtatacaatttttaagttatgcaaaatctcaattgaata 52109565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 73 - 239
Target Start/End: Complemental strand, 8880764 - 8880603
Alignment:
Q  73 tgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatccattactcacaacaatcc 172  Q
    ||||||||| ||||||||||||| ||| |||||||||||||||||||||| |||  | |    |||  ||     |||||| ||||||||||||||||||    
T  8880764 tgggagacagaaaagtctcaaggctaggtgtgagattgttagtaggtacattttacactaaacaatctca-----caaaattcattactcacaacaatcc 8880670  T
Q  173 attaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||| || | |||||||||| | | ||||||||||||||| |||||||| |||||||||||    
T  8880669 attaaaatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaata 8880603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 3435790 - 3435891
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaatatcacaga 246  Q
    |||||||| ||||||||||||||||||||||||||| || | ||||||||||||    |||||||||||||| |||||||| ||||||||||| ||| ||    
T  3435790 acaaaatctattactcacaacaatccattaaaatccgtagagttttgaataccagcacacaatttttaagttatgcaaaatctcaattgaataccactga 3435889  T
Q  247 at 248  Q
    ||    
T  3435890 at 3435891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 25936038 - 25935946
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||||||||| |    | |||||||||| | | ||||||||||||||| |||||||| |||||||||||    
T  25936038 acaaaatccattactcacaacaatccattaaaattcgatgagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaata 25935946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 7820374 - 7820320
Alignment:
Q  65 gctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggt 119  Q
    ||||||||||||||||| ||||||||| ||| ||| |||||||||||||||||||    
T  7820374 gctatgtgtgggagacagaaaagtctccaggctaggtgtgagattgttagtaggt 7820320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 42721048 - 42720986
Alignment:
Q  65 gctatgtgtgggagacaaaaaa-gtctcaaggttagatgtgagattgttagtaggtacaattt 126  Q
    |||||||||||||||||||||| ||||||||| ||| |||||||||||| |||| |||| |||    
T  42721048 gctatgtgtgggagacaaaaaaagtctcaaggctaggtgtgagattgttggtagatacatttt 42720986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 3435731 - 3435770
Alignment:
Q  83 aaaagtctcaaggttagatgtgagattgttagtaggtaca 122  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  3435731 aaaagtctcaaggctaggtgtgagattgttagtaggtaca 3435770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 10643721 - 10643939
Alignment:
Q  18 aaaaaatgaagtgggagaaggagtaaaaagtctcaagaaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtag 117  Q
    ||||| |||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  10643721 aaaaactgaagtgggagatggagtaaaaagtctcaagaaatcttaaggctatgtgtgggagacaaaaaagtcttaagattaggtgtgagattgttagtag 10643820  T
Q  118 gtacaattttgaattttgaataccaatggacaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagt 217  Q
    ||||| |||  | |    | |  |     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  10643821 gtacattttacactaaaaagtctc-----acaaaatccattactcacaacaatccattaaaatccttacaattttgattaccaatagacaatttttaagt 10643915  T
Q  218 tgtg--caaaatttcaattgaata 239  Q
    ||||  |||||| |||||||||||    
T  10643916 tgtgatcaaaatctcaattgaata 10643939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 239
Target Start/End: Complemental strand, 30878179 - 30878011
Alignment:
Q  66 ctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatccattactcaca 165  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| | || |||  | |    | |  ||     |||||||||||||||| |    
T  30878179 ctatgtgtgggagacaaaaaagtctcaaggctagatgtgagattgttagtagatgcattttacactaaaaagtctca-----caaaatccattactcata 30878085  T
Q  166 acaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||| ||| |||||| | |||||||||    
T  30878084 acaatccattaaaatccttagaattttgaataccaatagacaatttttaagctgtacaaaatctgaattgaata 30878011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 6476459 - 6476638
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || ||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |||| |||  | |    |||  ||     |||||||    
T  6476459 aaatctcaaggctatgtgtgggagacagaaaagtctcaaggctaggtgtgagattgttagtagttacattttacactaaacaatctca-----caaaatc 6476553  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| || | |||||||||| | | ||||||||||||||| |||||||| |||||||||||    
T  6476554 cattactcacaacaatccattaaaatccgtagagttttgaatactagtagacaatttttaagttatgcaaaatctcaattgaata 6476638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 7858207 - 7858299
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||| ||||||||||||||| ||||||||||| || ||||||||||| |||| |||||||||||||||||||||||| |||||||||||    
T  7858207 acaaaatctattactcacaacaatgcattaaaatccgtagaattttgaatatcaatagacaatttttaagttgtgcaaaatctcaattgaata 7858299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 29834120 - 29834210
Alignment:
Q  149 aaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||||||||| || | ||||||||||| || ||||||||||||||| |||||||| |||||||||||    
T  29834120 aaaatccattactcacaacaatccattaaaatccgtagagttttgaataccgatagacaatttttaagttatgcaaaatctcaattgaata 29834210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 29865554 - 29865644
Alignment:
Q  149 aaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||||||||| || | ||||||||||| || ||||||||||||||| |||||||| |||||||||||    
T  29865554 aaaatccattactcacaacaatccattaaaatccgtagagttttgaataccgatagacaatttttaagttatgcaaaatctcaattgaata 29865644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 3110118 - 3110214
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaatatcac 243  Q
    |||||||||||||||||||||||||||||||||||| || | ||||||||| |     |||||||| |||||  ||||||| |||||||||||||||    
T  3110118 acaaaatccattactcacaacaatccattaaaatccgtagagttttgaataactgcacacaattttcaagttaggcaaaatctcaattgaatatcac 3110214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 122
Target Start/End: Original strand, 29834064 - 29834098
Alignment:
Q  88 tctcaaggttagatgtgagattgttagtaggtaca 122  Q
    |||||||||||| ||||||||||||||||||||||    
T  29834064 tctcaaggttaggtgtgagattgttagtaggtaca 29834098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 122
Target Start/End: Original strand, 29865498 - 29865532
Alignment:
Q  88 tctcaaggttagatgtgagattgttagtaggtaca 122  Q
    |||||||||||| ||||||||||||||||||||||    
T  29865498 tctcaaggttaggtgtgagattgttagtaggtaca 29865532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 709165 - 709073
Alignment:
Q  147 acaaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    ||||||||||||||   ||| ||||||| ||||||  || | |||||||||||||| |||||||  |||||  ||  ||||||||||||||||    
T  709165 acaaaatccattacatccaagaatccatcaaaatctatagacttttgaataccaatagacaattcataagtcatgagaaatttcaattgaata 709073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 81528 - 81707
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || |||||||||| |||| | ||||||||||||||||| ||||||||||||||||| |||| |||  | |    |||  ||     |||||||    
T  81528 aaatctcaaggctatgtgtgagagatagaaaagtctcaaggttaggtgtgagattgttagtagatacattttacactaaacaatctca-----caaaatc 81622  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| || | ||||||||||||   ||||||||||||||| |||||||| |||||||||||    
T  81623 cattactcacaacaatccattaaaatccgtagagttttgaataccaggagacaatttttaagttatgcaaaatctcaattgaata 81707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 21248 - 21338
Alignment:
Q  149 aaaatccattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||||||||| || | ||||||||||| || ||||||||||||||| |||||||| |||||||||||    
T  21248 aaaatccattactcacaacaatccattaaaatccgtagagttttgaataccgatagacaatttttaagttatgcaaaatctcaattgaata 21338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 122
Target Start/End: Original strand, 21192 - 21226
Alignment:
Q  88 tctcaaggttagatgtgagattgttagtaggtaca 122  Q
    |||||||||||| ||||||||||||||||||||||    
T  21192 tctcaaggttaggtgtgagattgttagtaggtaca 21226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 34560 - 34739
Alignment:
Q  55 aaatctgaaagctatgtgtgggagacaaaaaagtctcaaggttagatgtgagattgttagtaggtacaattttgaattttgaataccaatggacaaaatc 154  Q
    |||||| || |||||||||| |||| | ||||||||||||||||| ||||||||||||||||| |||| |||  | |    |||  ||     |||||||    
T  34560 aaatctcaaggctatgtgtgagagatagaaaagtctcaaggttaggtgtgagattgttagtagatacattttacactaaacaatctca-----caaaatc 34654  T
Q  155 cattactcacaacaatccattaaaatccttacaattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||||||||||||||||||| || | ||||||||| ||   ||||||||||||||| |||||||| |||||||||||    
T  34655 cattactcacaacaatccattaaaatccgtagagttttgaatatcagcagacaatttttaagttatgcaaaatctcaattgaata 34739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 16314 - 16373
Alignment:
Q  65 gctatgtgtgggagacaaaaaagtctcaaggt--tagatgtgagattgttagtaggtaca 122  Q
    |||||||||| |||||| ||||||||||||||  ||| ||||||||||||||||||||||    
T  16314 gctatgtgtgagagacataaaagtctcaaggttataggtgtgagattgttagtaggtaca 16373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 16415 - 16467
Alignment:
Q  187 aattttgaataccaatggacaatttttaagttgtgcaaaatttcaattgaata 239  Q
    |||||||||||| ||| ||||||||||||||| |||||||| |||||||||||    
T  16415 aattttgaatactaatagacaatttttaagttatgcaaaatctcaattgaata 16467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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