View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_low_37 (Length: 252)
Name: NF6690_low_37
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 39028837 - 39029065
Alignment:
| Q |
17 |
atatagtagaaatgatcaaataataatgttattgactttttgttacaccttctattgacaaaaatattgaagaccgaagtttcagtgctatctccaagag |
116 |
Q |
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| T |
39028837 |
atatagtagaaatgatcaaataataatgttattgactttttgttacaccttctattgacaaaaatattgaagaccgaagtttcagtgctatctccaagag |
39028936 |
T |
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| Q |
117 |
ttgcatttttggatcatcaacgcttgcttctaaatgttgataacagtgctctcaagcaaagaattgcagcccttgcacaagacaagctattcaaagatgg |
216 |
Q |
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| T |
39028937 |
ttgcatttttggatcatcaacgcttgcttctaaatgttgataacagtgctctcaagcaaagaattgcagcccttgcacaagacaagctattcaaagatgg |
39029036 |
T |
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| Q |
217 |
taatttaattatttcttcaatgttatatt |
245 |
Q |
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| T |
39029037 |
taatttaattatttcttcaatgttatatt |
39029065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 218
Target Start/End: Original strand, 30730436 - 30730562
Alignment:
| Q |
92 |
gaagtttcagtgctatctccaagagttgcatttttggatcatcaacgcttgcttctaaatgttgataacagtgctctcaagcaaagaattgcagcccttg |
191 |
Q |
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| T |
30730436 |
gaagtatcagtgctgtcaccacgggttgcatatttggatcatcagaggttgcttctaaatgttgataacagtgctatcaagcaaagaatcgcagccctag |
30730535 |
T |
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| Q |
192 |
cacaagacaagctattcaaagatggta |
218 |
Q |
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| T |
30730536 |
cccaagacaaaatcttcaaagatggta |
30730562 |
T |
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