View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_low_39 (Length: 248)
Name: NF6690_low_39
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3978837 - 3978603
Alignment:
| Q |
1 |
gcatgtagtcaaaattgagtaagagcagcaatgggatgaatcgagtgtcacaccatcataaa----------ccatcaaaatcacttagcagatacttca |
90 |
Q |
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| T |
3978837 |
gcatgtagtcaaaattgagtaagagcagcaatgggatgaatcgagtgtcacaccatcataaaacatcataaaccatcaaaatcacttagcagatacttca |
3978738 |
T |
|
| Q |
91 |
taaaggcaaaatccatgacagtcgtacaaaaacttcaaattgaaattgacaaatcaatgcatattgaagcttagttagcttttacatgttgcaaaacaac |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3978737 |
taaaggcaaaatccatgacagtcgtacaaaaacttcaaattgaaattgacaaatcaatgcatattgaagcttagttagcttttacatgttgcaaaacaac |
3978638 |
T |
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| Q |
191 |
attataggcttcatgttcctccccaaaatcctgcc |
225 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
3978637 |
attataggcttcatgttcctccccaaaatcctgcc |
3978603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 27865038 - 27865093
Alignment:
| Q |
167 |
agcttttacatgttgcaaaacaacattataggcttcatgttcctccccaaaatcct |
222 |
Q |
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| T |
27865038 |
agctttgacgtgctgcaaaacaacattgtaggcttcatgttcctccccaaaatcct |
27865093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 827646 - 827590
Alignment:
| Q |
167 |
agcttttacatgttgcaaaacaacattataggcttcatgttcctccccaaaatcctg |
223 |
Q |
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|||||| || || |||| ||||||||| ||||||||||||||||||||||| ||||| |
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| T |
827646 |
agctttcacgtgctgcagaacaacattgtaggcttcatgttcctccccaaagtcctg |
827590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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