View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_low_42 (Length: 242)
Name: NF6690_low_42
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 49887016 - 49886813
Alignment:
| Q |
19 |
aatgtattgaaaccttgagtagaaaaaagagtgggatactatatttccaagattggatttcatgtagttgaattactcgtcatttttatgtcaactttca |
118 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49887016 |
aatgtattgaaaccttgagtagaaagaagagtggaatactatatttccaagattggatttcatgtagttgaattactcgtcatttttatgtcaactttca |
49886917 |
T |
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| Q |
119 |
ggctattgatccgaaaacaaagaattcttaaaccctaaaagaagttccttccattagtgattggtcacatggttctttcccacgatatttagtgttctat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49886916 |
ggctattgatccgaaaacaaagaattcttaaaccctaaaagaagttccttccattagtgattggtcacatggttctttcccacgatatttagtgttctat |
49886817 |
T |
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| Q |
219 |
gata |
222 |
Q |
| |
|
|||| |
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|
| T |
49886816 |
gata |
49886813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 18151328 - 18151389
Alignment:
| Q |
19 |
aatgtattgaaaccttgagtag-aaaaaagagtgggatactatatttccaagattggatttc |
79 |
Q |
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||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
18151328 |
aatgtatcgaaaccttgagtagcaaaaaagagtgggatactgtatttccaagattggatttc |
18151389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 16774156 - 16774095
Alignment:
| Q |
19 |
aatgtattgaaaccttgagtag-aaaaaagagtgggatactatatttccaagattggatttc |
79 |
Q |
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||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
16774156 |
aatgtatcgaaaccttgagtagcaaaaaagagtgggatactgtatttccaagattggatttc |
16774095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 28373062 - 28373001
Alignment:
| Q |
19 |
aatgtattgaaaccttgagtag-aaaaaagagtgggatactatatttccaagattggatttc |
79 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
28373062 |
aatgtatcgaaaccttgagtagcaaaaaagagtgggatactgtatttccaagattggatttc |
28373001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 28380884 - 28380823
Alignment:
| Q |
19 |
aatgtattgaaaccttgagtag-aaaaaagagtgggatactatatttccaagattggatttc |
79 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
28380884 |
aatgtatcgaaaccttgagtagcaaaaaagagtgggatactgtatttccaagattggatttc |
28380823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 15988257 - 15988196
Alignment:
| Q |
19 |
aatgtattgaaaccttgagtag-aaaaaagagtgggatactatatttccaagattggatttc |
79 |
Q |
| |
|
||||||| |||||||| |||| |||||||||||| |||| |||||||||||||||||||| |
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|
| T |
15988257 |
aatgtatcgaaaccttatgtagcaaaaaagagtggagtactgtatttccaagattggatttc |
15988196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 45921753 - 45921692
Alignment:
| Q |
19 |
aatgtattgaaaccttgagtag-aaaaaagagtgggatactatatttccaagattggatttc |
79 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||| |||||| ||||||||||||| |
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| T |
45921753 |
aatgtatcgaaaccttgagtagcaaaaaagagtgggatactgtatttctaagattggatttc |
45921692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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