View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_low_46 (Length: 235)
Name: NF6690_low_46
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 8432120 - 8432234
Alignment:
| Q |
1 |
atatagtattgattttcctacatcatagatcatatttgctgcattttgttcagttttccttaatttttatcctactacaatgaaagcttcacataaatcc |
100 |
Q |
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| T |
8432120 |
atatagtattgattttcctacatcatagatcatatttgctgcattttgtttagttttccttaatttttatcctactacaatgaaagtttcacataaatcc |
8432219 |
T |
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| Q |
101 |
attaggtggaagtga |
115 |
Q |
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| T |
8432220 |
attaggtggaagtga |
8432234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 121 - 216
Target Start/End: Original strand, 8432966 - 8433061
Alignment:
| Q |
121 |
atgattatttgttctttttcttctaagatttgaagccaaatgataacatatatgattttgtcggatttttctcgatgaatatattccaaatatcat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
8432966 |
atgattatttgttctttttcttctaagatttgaagccaaatgataacatatatgattttgtcggattgttctcaatgaatatattccaaatatcat |
8433061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 28562205 - 28562285
Alignment:
| Q |
135 |
tttttcttctaagatttgaagccaaatgataacatatatgattttgtcggatttttctcgatgaatatattccaaatatca |
215 |
Q |
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||||||| |||| || || || ||||||||||||| || ||| |||| |||||| ||||||||||||| || |||||||| |
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| T |
28562205 |
tttttctactaatatatgtagacaaatgataacatgtaagatgttgttggatttgtctcgatgaatatttttaaaatatca |
28562285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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