View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_low_49 (Length: 226)
Name: NF6690_low_49
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 2 - 189
Target Start/End: Original strand, 42423281 - 42423468
Alignment:
| Q |
2 |
caaaatcaattttactcaagaacatccaaacattacgttaaagtcaattctacacctctagaatcaacatttcctccttcaaaattggaacataacataa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42423281 |
caaaatcaattttactcaagaacatccaaacattacgttaaagtcaattccacacctctagaatcaacattgcctccttcaaaattggaacataacataa |
42423380 |
T |
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| Q |
102 |
acatatatctttatcatgaatttttaattctccatcaatcaaatacaaaactaagttaactctttcaattaaaacaccaaaagggatt |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42423381 |
acatatatctttatcatgaatttttaattctccatcaatcaaatacaaaactaagttaactctttcaattaaaacaccaaaagggatt |
42423468 |
T |
|
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 43987646 - 43987679
Alignment:
| Q |
1 |
acaaaatcaattttactcaagaacatccaaacat |
34 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
43987646 |
acaaaatcaattgtactcaagaacatccaaacat |
43987679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 5997378 - 5997410
Alignment:
| Q |
2 |
caaaatcaattttactcaagaacatccaaacat |
34 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
5997378 |
caaaatcaattttactcaaaaacatccaaacat |
5997410 |
T |
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