View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_low_50 (Length: 222)
Name: NF6690_low_50
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 8368404 - 8368214
Alignment:
| Q |
16 |
aaaatggattgaatgaaggattagaaagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggt |
115 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8368404 |
aaaatggatggaatgaaggattagaaagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggt |
8368305 |
T |
|
| Q |
116 |
attgaagataaataagacattggctattgcaggaccattactcactggaattgcagctgtggggtccacatttgttggtcaaggttcattg |
206 |
Q |
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| T |
8368304 |
gttgaagataaataagacattggctattgcaggaccattactcactggaattgcagctgtggggtccacatttgttggtcaaggttcattg |
8368214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 8401006 - 8401196
Alignment:
| Q |
16 |
aaaatggattgaatgaaggattagaaagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggt |
115 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8401006 |
aaaatggatggaatgaaggattagaaagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggt |
8401105 |
T |
|
| Q |
116 |
attgaagataaataagacattggctattgcaggaccattactcactggaattgcagctgtggggtccacatttgttggtcaaggttcattg |
206 |
Q |
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| T |
8401106 |
gttgaagataaataagacattggctattgcaggaccattactcactggaattgcagctgtggggtccacatttgttggtcaaggttcattg |
8401196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 8422583 - 8422773
Alignment:
| Q |
16 |
aaaatggattgaatgaaggattagaaagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggt |
115 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8422583 |
aaaatggatggaatgaaggattagaaagtgaagtaaaagatgtattagaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggt |
8422682 |
T |
|
| Q |
116 |
attgaagataaataagacattggctattgcaggaccattactcactggaattgcagctgtggggtccacatttgttggtcaaggttcattg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8422683 |
gttgaagataaataagacattggctattgcaggaccattactcactggaattgcagctgtggggtccacatttgttggtcaaggttcattg |
8422773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 8431245 - 8431135
Alignment:
| Q |
63 |
gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactg |
162 |
Q |
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||||| || ||||||||||| | ||||||||||| ||| | |||||| | | ||||||| |||| |||| ||||| |||||||| ||||||||| | | |
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| T |
8431245 |
gaagtgataaagagaaaagacgttgaagattatgatagacttggaaacatagcattgaaggtaaacaagagtttggcaattgcagggccattactctcag |
8431146 |
T |
|
| Q |
163 |
gaattgcagct |
173 |
Q |
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||||||||||| |
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| T |
8431145 |
gaattgcagct |
8431135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 8412106 - 8411997
Alignment:
| Q |
63 |
gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactg |
162 |
Q |
| |
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||||| || |||||||||||| ||||||||||| ||| | |||||| | | |||||| |||| |||| ||||| |||||||| ||||||||||| | |
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| T |
8412106 |
gaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacag |
8412007 |
T |
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| Q |
163 |
gaattgcagc |
172 |
Q |
| |
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|||||||||| |
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| T |
8412006 |
gaattgcagc |
8411997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 8417324 - 8417215
Alignment:
| Q |
63 |
gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactg |
162 |
Q |
| |
|
||||| || |||||||||||| ||||||||||| ||| | |||||| | | |||||| |||| |||| ||||| |||||||| ||||||||||| | |
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| T |
8417324 |
gaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacag |
8417225 |
T |
|
| Q |
163 |
gaattgcagc |
172 |
Q |
| |
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|||||||||| |
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| T |
8417224 |
gaattgcagc |
8417215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 8434204 - 8434095
Alignment:
| Q |
63 |
gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactg |
162 |
Q |
| |
|
||||| || |||||||||||| ||||||||||| ||| | |||||| | | |||||| |||| |||| ||||| |||||||| ||||||||||| | |
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| T |
8434204 |
gaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacag |
8434105 |
T |
|
| Q |
163 |
gaattgcagc |
172 |
Q |
| |
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|||||||||| |
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| T |
8434104 |
gaattgcagc |
8434095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 190
Target Start/End: Original strand, 8375924 - 8376027
Alignment:
| Q |
87 |
gaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactggaattgcagctgtggggtccacat |
186 |
Q |
| |
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||||||||||| ||| | |||||| | | ||||||| |||| |||| ||||| |||||||| ||||| ||||| |||||||||||| | || || |||| |
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| T |
8375924 |
gaagattatgacagacttggaaacatagcattgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatcgacat |
8376023 |
T |
|
| Q |
187 |
ttgt |
190 |
Q |
| |
|
|||| |
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| T |
8376024 |
ttgt |
8376027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 8439179 - 8439093
Alignment:
| Q |
87 |
gaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactggaattgcagct |
173 |
Q |
| |
|
||||||||||| ||| | |||||| | | ||||||| |||| |||| ||||| |||||||| ||||| ||||| |||||||||||| |
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| T |
8439179 |
gaagattatgacagacttggaaacatagcattgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagct |
8439093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 8404023 - 8403987
Alignment:
| Q |
70 |
tgaagagaaaagatatggaagattatgagagattagg |
106 |
Q |
| |
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|||||||||||||||| || ||||||||||||||||| |
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| T |
8404023 |
tgaagagaaaagatattgaggattatgagagattagg |
8403987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 55336351 - 55336242
Alignment:
| Q |
63 |
gaagttatgaagagaaaagatatggaagattatgagagattaggaaacttggtattgaagataaataagacattggctattgcaggaccattactcactg |
162 |
Q |
| |
|
|||||| | ||||| ||||| || ||||| ||||||||| | ||||| | | ||||||||| || |||| |||| || ||||| ||||||||||||| |
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|
| T |
55336351 |
gaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaagattaacaagagtatggcaatagcaggtccattactcactg |
55336252 |
T |
|
| Q |
163 |
gaattgcagc |
172 |
Q |
| |
|
|||||||||| |
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|
| T |
55336251 |
gaattgcagc |
55336242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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