View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_low_54 (Length: 204)
Name: NF6690_low_54
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 55427665 - 55427858
Alignment:
| Q |
1 |
aaaaacaaaacaacagtgatcatattctccaatatggtatattcaaacgctgtccataattattgatgatcataccctaacaagtaaatcctcaagtaaa |
100 |
Q |
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| T |
55427665 |
aaaaacaaaacatcagtgatcatattctccaatatggtatattcaaacgctgtccataatgattgatgatcataccctaacaagtaaatcctcaagtaaa |
55427764 |
T |
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| Q |
101 |
caacagagtccaatccagcatggtcaataagctcaggttccggcattctaagtgcagccggcatccaattcaaaaaccgaatatatgatgtcca |
194 |
Q |
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| T |
55427765 |
cagcagagtccaatccagcatggtcaataagctcaggttccggcattctaagtgcagccggcatccaattcaaaaaccgaatatatgatctcca |
55427858 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 37418500 - 37418404
Alignment:
| Q |
82 |
aagtaaatcctcaagtaaacaacagagtccaatccagcatggtcaataagctcaggttccggcattctaagtgcagccggcatccaattcaaaaacc |
178 |
Q |
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| T |
37418500 |
aagtagatcctcaagtatacagcagaatccaagcctgcatgttcaattagttcgggttccggcatttgcaatgcagcaggcatccagttcaagaacc |
37418404 |
T |
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