View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_low_6 (Length: 510)
Name: NF6690_low_6
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_low_6 |
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| [»] scaffold0143 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 27 - 489
Target Start/End: Original strand, 33518230 - 33518692
Alignment:
| Q |
27 |
tggacatcattccacaaaatagaatcaaacaattcctgaacaaaaggaaaagaaacgagtcaaccaaacgtattgaaccttttctttgttattaggtatt |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33518230 |
tggacatcattccacaaaatagaatcaaacaattcctgaacaagaggaaaagaaacgagtcaaccaaacgtattgaaccttttttttgttattaggtatt |
33518329 |
T |
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| Q |
127 |
ttnnnnnnntggctcatgtattcatttatgagttcaaatagtgnnnnnnnnncctttgtaaaattcttgtaaagtgataatagatatatcaagaatacat |
226 |
Q |
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| T |
33518330 |
taaaaaaaaaggctcatgtattcatttatgagttcaaatagtgttttttttttctttgtaaaattcttgtagagtgataatagatatatcaagaatacat |
33518429 |
T |
|
| Q |
227 |
cttagtaatggaagaatattcaaagtatatacataaggt-atcttatttagaggttgatccagacatcatgctctaaaagggagaaaaacacagcattta |
325 |
Q |
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|||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33518430 |
cttagtaatgga-gaatattcaaagtatatacacaaggtgatcttatttagaggttgatccagacatcatgctctaaaagggagaaaaacacagcattta |
33518528 |
T |
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| Q |
326 |
ataattaaacaagtttaacacaattaatacaagtagaactattcaattgctttgttcattactagagttagtcctccaaaatccttgatccaaacataga |
425 |
Q |
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| T |
33518529 |
ataattaaacaagtttaacacaattaatacaagtagaactattcaattgctttgttcattactagagttagtcctccaaaatccttgatccaaacataga |
33518628 |
T |
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| Q |
426 |
cctaaattttgtcttccaaaatccttgatccaaaaatatactatatgttttggatgaagatgtg |
489 |
Q |
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| T |
33518629 |
cctaaattttgtcttccaaaatccttgatccaaaaatatactatatgttttggatgaagatgtg |
33518692 |
T |
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Target: scaffold0143 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0143
Description:
Target: scaffold0143; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 388 - 489
Target Start/End: Original strand, 2 - 103
Alignment:
| Q |
388 |
tagagttagtcctccaaaatccttgatccaaacatagacctaaattttgtcttccaaaatccttgatccaaaaatatactatatgttttggatgaagatg |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2 |
tagagttagtcctccaaaatccttgatccaaacatagacctaaattttgtcttccaaaatccttgatccaaaaatatactatatgttttggatgaagatg |
101 |
T |
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| Q |
488 |
tg |
489 |
Q |
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|| |
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| T |
102 |
tg |
103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 381
Target Start/End: Original strand, 55447265 - 55447448
Alignment:
| Q |
199 |
agtgataatagatatatcaagaatacatcttagtaatggaagaatattcaaagtatatacataaggt-atcttatttagaggttgatccagacatcatgc |
297 |
Q |
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||||||||||| ||||||||| |||| ||||| |||||||||||||||||||| |||| | ||||| |||||| | |||||||||||| ||||| | |
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| T |
55447265 |
agtgataataggtatatcaagtatacttcttaaaaatggaagaatattcaaagtttatatacaaggtggccttattca-aggttgatccaggcatcacgg |
55447363 |
T |
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| Q |
298 |
tctaaaagggagaaaaacacagcat-ttaataattaaacaagtttaacacaattaatacaagtagaactattcaattgctttgtt |
381 |
Q |
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|||| |||||| |||||| || | |||||||||||| || |||| |||||| ||| || ||||||||||||| |||| |||| |
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| T |
55447364 |
tctagaagggataaaaactcaaagtattaataattaaataattttataacaattcataaaaatagaactattcaactgctatgtt |
55447448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 55447144 - 55447217
Alignment:
| Q |
27 |
tggacatcattccacaaaatagaatcaaacaattcctgaacaaaaggaaaagaaacgagtcaaccaaacgtatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| || || |||| | |||| || ||||||||| ||||| |
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| T |
55447144 |
tggacatcattccacaaaatagaatcaaacaattcctaaagaagaggatacgaaatgaatcaaccaaatgtatt |
55447217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 7046023 - 7045986
Alignment:
| Q |
29 |
gacatcattccacaaaatagaatcaaacaattcctgaa |
66 |
Q |
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| T |
7046023 |
gacatcattccacaaaatagaatcaaacaattcctgaa |
7045986 |
T |
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