View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6690_low_7 (Length: 490)
Name: NF6690_low_7
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6690_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 11 - 483
Target Start/End: Complemental strand, 1124266 - 1123794
Alignment:
| Q |
11 |
tggacatcaaatgcaatggcagctacattatatgtgaaaatctgaaatacttaatgactttcataattttcaaccaaatcatataagtaaattcctgata |
110 |
Q |
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| T |
1124266 |
tggacatcaaatgcaatggcagctacattatatgtgaaaatctgaaatacttaatgactttcataattttcaaccaaatcatataagtaaattcctgata |
1124167 |
T |
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| Q |
111 |
tacaaccctggtgtagtctagcgtagaaaaacctagccggtggtcataaggaaaggtaattaataattataaacgcattaggaaaacaaaagtcacatgc |
210 |
Q |
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| T |
1124166 |
tacaaccctggtgtagtctagtgtagaaaaacctagccggtggtcataaggaaaggtaattaataattataaacgcattaggaaaacaaaagtcacatgc |
1124067 |
T |
|
| Q |
211 |
acctggattccaagtattttatcattatttgccagctcaattaaaagttgcctcagcttagcttcaacgttagaatggactggggaatcaaaaacccatc |
310 |
Q |
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| T |
1124066 |
acctggattccaagtattttatcattatttgccagctcaattaaaagttgcctcagcttagcttcaacgttagaatggactggggaatcaaaaacccatc |
1123967 |
T |
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| Q |
311 |
tatcatttactgatggtcctctattaataaacctgggaagtccacctcatgtcagccataggtgaaacaagcaatgaagaagatactaataatttgnnnn |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1123966 |
tatcatttactgatggtcctctattaataaacctgggaagtcaacctcatgtcagccataggtgaaacaagcaatgaagaagatactaataatttgtttt |
1123867 |
T |
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| Q |
411 |
nnnaagnnnnnnnnnnnnnncaaatgactcacccactcaaaacagattctgcaaatggcctcatgatgtccat |
483 |
Q |
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| T |
1123866 |
tttaagaaaaaaagaaaaaacaaatgactcacccactcaaaacagattctgcaaatggcttcattatgtccat |
1123794 |
T |
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