View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6690_low_8 (Length: 474)

Name: NF6690_low_8
Description: NF6690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6690_low_8
NF6690_low_8
[»] chr4 (14 HSPs)
chr4 (1-289)||(41392781-41393065)
chr4 (352-453)||(41394009-41394116)
chr4 (291-360)||(41393125-41393194)
chr4 (322-390)||(53261599-53261667)
chr4 (323-365)||(7996774-7996816)
chr4 (322-393)||(3179003-3179075)
chr4 (322-393)||(40252694-40252764)
chr4 (322-387)||(20022234-20022299)
chr4 (328-393)||(35153289-35153355)
chr4 (344-390)||(39767248-39767294)
chr4 (323-385)||(41370166-41370228)
chr4 (340-393)||(25042749-25042802)
chr4 (320-361)||(32175502-32175543)
chr4 (320-392)||(18939863-18939935)
[»] chr2 (16 HSPs)
chr2 (315-390)||(32066763-32066838)
chr2 (317-390)||(12848464-12848537)
chr2 (323-393)||(9049148-9049218)
chr2 (322-390)||(33068540-33068608)
chr2 (340-390)||(565707-565757)
chr2 (320-390)||(6411369-6411439)
chr2 (340-390)||(24389638-24389688)
chr2 (340-390)||(30523044-30523094)
chr2 (317-393)||(431625-431702)
chr2 (320-390)||(28695607-28695678)
chr2 (340-390)||(15806055-15806105)
chr2 (320-365)||(44838682-44838728)
chr2 (329-374)||(18043897-18043942)
chr2 (335-384)||(18684409-18684458)
chr2 (334-390)||(6083911-6083967)
chr2 (332-392)||(43678558-43678618)
[»] chr3 (12 HSPs)
chr3 (315-363)||(3026974-3027022)
chr3 (322-390)||(25317846-25317914)
chr3 (323-390)||(14146141-14146208)
chr3 (323-390)||(45757970-45758037)
chr3 (323-365)||(20821370-20821412)
chr3 (322-390)||(22772901-22772970)
chr3 (322-390)||(33072108-33072176)
chr3 (317-357)||(39651991-39652031)
chr3 (330-385)||(25548203-25548258)
chr3 (322-363)||(24313620-24313661)
chr3 (352-393)||(28691951-28691992)
chr3 (321-365)||(40628956-40629000)
[»] chr7 (9 HSPs)
chr7 (322-393)||(24610835-24610906)
chr7 (317-390)||(8237991-8238064)
chr7 (317-390)||(34299735-34299808)
chr7 (322-390)||(5482405-5482472)
chr7 (322-385)||(44452038-44452102)
chr7 (337-386)||(32699401-32699450)
chr7 (320-380)||(5907874-5907934)
chr7 (322-390)||(19620033-19620101)
chr7 (322-385)||(26872781-26872845)
[»] chr1 (15 HSPs)
chr1 (322-393)||(39973930-39974001)
chr1 (320-390)||(48947245-48947315)
chr1 (322-390)||(38172686-38172754)
chr1 (315-390)||(40286899-40286974)
chr1 (315-365)||(4040959-4041009)
chr1 (322-365)||(33791736-33791779)
chr1 (323-390)||(40053334-40053401)
chr1 (320-393)||(51904564-51904637)
chr1 (315-363)||(1656505-1656553)
chr1 (322-390)||(24034098-24034166)
chr1 (322-390)||(35259043-35259111)
chr1 (344-390)||(16113960-16114006)
chr1 (316-390)||(44461616-44461689)
chr1 (321-390)||(290632-290701)
chr1 (320-365)||(37188524-37188568)
[»] chr8 (16 HSPs)
chr8 (324-390)||(36907841-36907907)
chr8 (323-390)||(2376726-2376793)
chr8 (317-390)||(31844209-31844283)
chr8 (317-386)||(1876474-1876543)
chr8 (322-392)||(35501064-35501135)
chr8 (320-390)||(14016862-14016932)
chr8 (343-393)||(32271208-32271258)
chr8 (323-365)||(38047607-38047649)
chr8 (322-390)||(12002308-12002376)
chr8 (315-386)||(1773791-1773862)
chr8 (322-365)||(32133692-32133735)
chr8 (322-365)||(34722774-34722817)
chr8 (322-365)||(41959978-41960021)
chr8 (322-390)||(30486650-30486719)
chr8 (317-365)||(33865190-33865238)
chr8 (317-365)||(39594481-39594529)
[»] chr5 (7 HSPs)
chr5 (315-386)||(27794849-27794920)
chr5 (322-386)||(38594928-38594992)
chr5 (344-390)||(14309106-14309152)
chr5 (320-390)||(16636658-16636728)
chr5 (324-393)||(28639590-28639660)
chr5 (340-385)||(31889662-31889707)
chr5 (323-363)||(5758630-5758670)
[»] chr6 (5 HSPs)
chr6 (322-390)||(29716761-29716830)
chr6 (319-390)||(10364784-10364855)
chr6 (323-365)||(26187452-26187494)
chr6 (315-390)||(27752687-27752767)
chr6 (322-392)||(34552319-34552390)
[»] scaffold0236 (1 HSPs)
scaffold0236 (320-393)||(19605-19678)


Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 41392781 - 41393065
Alignment:
Q  1 tcgtgttctagacttggcaataatttagtctttacttactatctttctgttaggattagaatttcaaaaaggaatgacccagatcgggttgttctcacct 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41392781 tcgtgttcaagacttggcaataatttagtctttacttactatctttctgttaggattagaatttcaaaaaggaatgacccagatcgggttgttctcacct 41392880  T
Q  101 atagtagtggtccctaacacctcaattaatatacataagagtggttgagtttgagacaggcttgaagaagcaaacaaatggggagacttatggatcaacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41392881 atagtagtggtccctaacacctcaattaatatacataagagtggttgagtttgagacaggcttgaagaagcaaacaaatggggtgacttatggatcaacc 41392980  T
Q  201 ggcattgactccttcaccacctttcatttttnnnnnnnnnnnttggaataacctaattagggtgtaattaagtattttacaaaccaatt 289  Q
    |||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||    
T  41392981 ggcattgactccttcaccacctttcattttt----ttaaaaattggaataacctaattagggtgtaattaagtattttacaaaccaatt 41393065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 352 - 453
Target Start/End: Original strand, 41394009 - 41394116
Alignment:
Q  352 aaagtttgtgtaattaacgcattagaaattgaaaactttaacnnnnnnnaaataataattatttaat------ttagaatgattaaaaagagttcgggag 445  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||| |||||      ||||||||||||||||||||| || ||    
T  41394009 aaagtttgtgtaattaacgcattagaaattgaaaactttaactttttttaaataataattacttaatttataattagaatgattaaaaagagtttggaag 41394108  T
Q  446 gactcgtt 453  Q
     |||||||    
T  41394109 cactcgtt 41394116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 291 - 360
Target Start/End: Original strand, 41393125 - 41393194
Alignment:
Q  291 aaaaaagggaaatgttaactaagtgacattagttaaggactttaaataataactttttatgaaagtttgt 360  Q
    ||||||| ||||||||||||||| | ||||| |||||||| ||||||| |||||||||||||||||||||    
T  41393125 aaaaaagagaaatgttaactaagcggcattaattaaggaccttaaatagtaactttttatgaaagtttgt 41393194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 53261667 - 53261599
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| |  ||||| |||||||||||||||    
T  53261667 gttaaggactttaaatagtaactttttataaaagtttgtgtaatcactgcattggaaattgaaaacttt 53261599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 365
Target Start/End: Complemental strand, 7996816 - 7996774
Alignment:
Q  323 ttaaggactttaaataataactttttatgaaagtttgtgtaat 365  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  7996816 ttaaggactttaaataataattttttatgaaagtttgtgtaat 7996774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 393
Target Start/End: Original strand, 3179003 - 3179075
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaattaa-cgcattagaaattgaaaactttaac 393  Q
    ||||| |||| |||||| |||||||||||||||||||||||||| ||  | ||| ||||||||||||||||||    
T  3179003 gttaaagactataaatagtaactttttatgaaagtttgtgtaataaagtgtattggaaattgaaaactttaac 3179075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 393
Target Start/End: Complemental strand, 40252764 - 40252694
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaactttaac 393  Q
    ||||||||||||||||| ||| |||||||||||| ||||||||| || | |||  |||||||||||||||||    
T  40252764 gttaaggactttaaatagtaaatttttatgaaag-ttgtgtaatcaatgtattgaaaattgaaaactttaac 40252694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 387
Target Start/End: Complemental strand, 20022299 - 20022234
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaac 387  Q
    ||||||||| ||||||| ||| |||||||||||||||||  ||| || ||||| ||||||||||||    
T  20022299 gttaaggaccttaaatagtaattttttatgaaagtttgtacaatcaatgcattggaaattgaaaac 20022234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 393
Target Start/End: Complemental strand, 35153355 - 35153289
Alignment:
Q  328 gactttaaataataactttttatgaaagtttgtgtaattaa-cgcattagaaattgaaaactttaac 393  Q
    ||||||||||| ||||||||||| |||||||||| ||| ||  |||||  |||||||||||||||||    
T  35153355 gactttaaatagtaactttttataaaagtttgtgcaataaagtgcattgaaaattgaaaactttaac 35153289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 390
Target Start/End: Complemental strand, 39767294 - 39767248
Alignment:
Q  344 tttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    ||||||| ||||||||||||||||| ||||| |||||| ||||||||    
T  39767294 tttttataaaagtttgtgtaattaatgcattggaaattaaaaacttt 39767248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 385
Target Start/End: Original strand, 41370166 - 41370228
Alignment:
Q  323 ttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaa 385  Q
    ||||||||||| |||| ||| ||||||||||| |||||||||| || |||||  |||||||||    
T  41370166 ttaaggactttgaatagtaagtttttatgaaaatttgtgtaatcaatgcattgaaaattgaaa 41370228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 25042749 - 25042802
Alignment:
Q  340 taactttttatgaaagtttgtgtaattaacgcattagaaattgaaaactttaac 393  Q
    ||||||||||| |||||||||||||| |   |||||||||||||||| ||||||    
T  25042749 taactttttataaaagtttgtgtaatcagtacattagaaattgaaaattttaac 25042802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 361
Target Start/End: Complemental strand, 32175543 - 32175502
Alignment:
Q  320 tagttaaggactttaaataataactttttatgaaagtttgtg 361  Q
    ||||||| |||||||||| |||||||||| ||||||||||||    
T  32175543 tagttaaagactttaaatgataactttttgtgaaagtttgtg 32175502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 392
Target Start/End: Original strand, 18939863 - 18939935
Alignment:
Q  320 tagttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaactttaa 392  Q
    ||||||||||| |||||  |||||||||||| |||||||||| ||  ||  ||||| |||||||||| |||||    
T  18939863 tagttaaggaccttaaaagataactttttataaaagtttgtgcaacaaatacattaaaaattgaaaattttaa 18939935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 315 - 390
Target Start/End: Complemental strand, 32066838 - 32066763
Alignment:
Q  315 gacattagttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||   ||||||||||| ||||||||    
T  32066838 gacattagttaaggaccttaaattataactttttatgaaagtttgtgtaattagtacattagaaattaaaaacttt 32066763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 12848464 - 12848537
Alignment:
Q  317 cattagttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    |||||||||||||| |||||| | |||||||||||||||||||||||||||  ||| | |||||||||||||||    
T  12848464 cattagttaaggaccttaaatgacaactttttatgaaagtttgtgtaattagtgcaatggaaattgaaaacttt 12848537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 9049148 - 9049218
Alignment:
Q  323 ttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaactttaac 393  Q
    ||||| || ||||||||||||||||||| ||| ||||||||||||| |||||  |||||||||| ||||||    
T  9049148 ttaagaaccttaaataataactttttataaaaatttgtgtaattaatgcattgaaaattgaaaaatttaac 9049218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 390
Target Start/End: Original strand, 33068540 - 33068608
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    |||||||||  |||| | ||||||||||||||||||||| |||| |  |||||||||||||||||||||    
T  33068540 gttaaggaccataaaaagtaactttttatgaaagtttgtataatcagtgcattagaaattgaaaacttt 33068608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 565707 - 565757
Alignment:
Q  340 taactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    ||||||||||||||||||||||||||||  ||||  |||||||||||||||    
T  565707 taactttttatgaaagtttgtgtaattagtgcataggaaattgaaaacttt 565757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 390
Target Start/End: Original strand, 6411369 - 6411439
Alignment:
Q  320 tagttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    |||||||| || ||||||||||||||||||| ||||| |||||||| |   |||| |||||||||||||||    
T  6411369 tagttaagaaccttaaataataactttttataaaagtatgtgtaatcagtacattggaaattgaaaacttt 6411439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 24389638 - 24389688
Alignment:
Q  340 taactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    |||||| ||||||||||||||||||| | |||||| |||||||||||||||    
T  24389638 taacttcttatgaaagtttgtgtaatcagcgcattggaaattgaaaacttt 24389688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 390
Target Start/End: Complemental strand, 30523094 - 30523044
Alignment:
Q  340 taactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    ||||||||||||||||||||||||||||   |||| |||||||||||||||    
T  30523094 taactttttatgaaagtttgtgtaattagtacattggaaattgaaaacttt 30523044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 317 - 393
Target Start/End: Original strand, 431625 - 431702
Alignment:
Q  317 cattagttaaggactttaaataataactttttatgaaagtttgtgtaattaa-cgcattagaaattgaaaactttaac 393  Q
    |||| ||||| ||||||||||  |||||||||||||||||||||||||  ||  ||||| ||||||||||| ||||||    
T  431625 cattggttaaagactttaaatggtaactttttatgaaagtttgtgtaaaaaagtgcattggaaattgaaaattttaac 431702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 390
Target Start/End: Original strand, 28695607 - 28695678
Alignment:
Q  320 tagttaaggactttaaataataactttttatgaaagtttgtgtaattaa-cgcattagaaattgaaaacttt 390  Q
    |||||||  |||||||||| ||||||||||| |||||||||||||| ||  ||||| ||||||||| |||||    
T  28695607 tagttaaacactttaaatagtaactttttataaaagtttgtgtaataaattgcattggaaattgaacacttt 28695678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 15806055 - 15806105
Alignment:
Q  340 taactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    ||||||||||| |||||||||||||| || |||||  ||||||||||||||    
T  15806055 taactttttataaaagtttgtgtaatcaatgcattgaaaattgaaaacttt 15806105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 365
Target Start/End: Complemental strand, 44838728 - 44838682
Alignment:
Q  320 tagttaaggactttaaataataact-ttttatgaaagtttgtgtaat 365  Q
    ||||||||||| ||||||||||||| |||||| ||||||||||||||    
T  44838728 tagttaaggaccttaaataataacttttttataaaagtttgtgtaat 44838682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 18043942 - 18043897
Alignment:
Q  329 actttaaataataactttttatgaaagtttgtgtaattaacgcatt 374  Q
    |||||||||| ||||||||||| ||| ||||||||||||| |||||    
T  18043942 actttaaatagtaactttttataaaactttgtgtaattaatgcatt 18043897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 18684458 - 18684409
Alignment:
Q  335 aataataactttttatgaaagtttgtgtaattaacgcattagaaattgaa 384  Q
    |||||||||||||||||||| |||||||| ||||  |||| |||||||||    
T  18684458 aataataactttttatgaaaatttgtgtatttaatacattggaaattgaa 18684409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 390
Target Start/End: Original strand, 6083911 - 6083967
Alignment:
Q  334 aaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    |||| |||||||||||| |||||||||||||| | | ||||  ||||||||||||||    
T  6083911 aaatgataactttttataaaagtttgtgtaatcagcacattgaaaattgaaaacttt 6083967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 392
Target Start/End: Original strand, 43678558 - 43678618
Alignment:
Q  332 ttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaactttaa 392  Q
    |||||| |||| ||||| | |||||||||||||||||  ||||  ||||||||||||||||    
T  43678558 ttaaatgataattttttttaaaagtttgtgtaattaatacattgaaaattgaaaactttaa 43678618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 3026974 - 3027022
Alignment:
Q  315 gacattagttaaggactttaaataataactttttatgaaagtttgtgta 363  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3026974 gacattagttaaggactttaaatagtaactttttatgaaagtttgtgta 3027022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 25317914 - 25317846
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    ||||||||| ||||||| ||| ||||||| ||||||||||||||  | ||||| |||||||||||||||    
T  25317914 gttaaggaccttaaatagtaaatttttataaaagtttgtgtaatcgatgcattggaaattgaaaacttt 25317846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 390
Target Start/End: Complemental strand, 14146208 - 14146141
Alignment:
Q  323 ttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    |||||||||||||||  ||| |||||||  ||||||||||||| |  |||||||||||||||||||||    
T  14146208 ttaaggactttaaatggtaaatttttatagaagtttgtgtaatcagtgcattagaaattgaaaacttt 14146141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 390
Target Start/End: Complemental strand, 45758037 - 45757970
Alignment:
Q  323 ttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    |||||||| ||||||||||  |||||||||||||||||||||| |  |||||  ||||||||||||||    
T  45758037 ttaaggaccttaaataatatttttttatgaaagtttgtgtaatcagtgcattgtaaattgaaaacttt 45757970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 365
Target Start/End: Complemental strand, 20821412 - 20821370
Alignment:
Q  323 ttaaggactttaaataataactttttatgaaagtttgtgtaat 365  Q
    |||||||||||||||  ||||||||||||||||||||||||||    
T  20821412 ttaaggactttaaatggtaactttttatgaaagtttgtgtaat 20821370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 22772970 - 22772901
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaattaa-cgcattagaaattgaaaacttt 390  Q
    ||||||||||||||||| ||||||||| |||||||||||  ||| ||  ||||| |||||||||||||||    
T  22772970 gttaaggactttaaatattaactttttgtgaaagtttgtagaataaattgcattggaaattgaaaacttt 22772901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 390
Target Start/End: Original strand, 33072108 - 33072176
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    ||||||||| | ||||  ||| ||||||| ||| ||||||||||||| ||||| |||||||||||||||    
T  33072108 gttaaggacctgaaatggtaattttttataaaaatttgtgtaattaatgcattggaaattgaaaacttt 33072176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 39652031 - 39651991
Alignment:
Q  317 cattagttaaggactttaaataataactttttatgaaagtt 357  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  39652031 cattagttaaggactttaaatggtaactttttatgaaagtt 39651991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 385
Target Start/End: Original strand, 25548203 - 25548258
Alignment:
Q  330 ctttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaa 385  Q
    |||||||| |||| ||||||||||| | |||||||| || ||||||||||||||||    
T  25548203 ctttaaatgataaatttttatgaaaatatgtgtaatcaatgcattagaaattgaaa 25548258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 363
Target Start/End: Complemental strand, 24313661 - 24313620
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgta 363  Q
    ||||| |||||||||| |||||||||||||||| ||||||||    
T  24313661 gttaaagactttaaatgataactttttatgaaaatttgtgta 24313620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 28691951 - 28691992
Alignment:
Q  352 aaagtttgtgtaattaacgcattagaaattgaaaactttaac 393  Q
    ||||||||||||||||  | ||||||||||||||||||||||    
T  28691951 aaagtttgtgtaattattgtattagaaattgaaaactttaac 28691992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 365
Target Start/End: Complemental strand, 40629000 - 40628956
Alignment:
Q  321 agttaaggactttaaataataactttttatgaaagtttgtgtaat 365  Q
    ||||||||| ||||||||| |||||||| ||||||||||| ||||    
T  40629000 agttaaggattttaaataacaactttttgtgaaagtttgtataat 40628956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 322 - 393
Target Start/End: Original strand, 24610835 - 24610906
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaactttaac 393  Q
    |||||||||||||||| |||| ||||||| ||||||||||||||||  | |||||||||| |||||||||||    
T  24610835 gttaaggactttaaatgataattttttataaaagtttgtgtaattagtgaattagaaattcaaaactttaac 24610906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 8238064 - 8237991
Alignment:
Q  317 cattagttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    |||||||||||||| ||||||  |||||||||||||||||||||||||| |  |||||  ||| ||||||||||    
T  8238064 cattagttaaggaccttaaatggtaactttttatgaaagtttgtgtaatcagtgcattgaaaaatgaaaacttt 8237991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 34299735 - 34299808
Alignment:
Q  317 cattagttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    |||| ||||||||| ||||||| |||||||||||||||||||||||||| |  || ||  ||||||||||||||    
T  34299735 cattggttaaggaccttaaatagtaactttttatgaaagtttgtgtaatcagtgctttgtaaattgaaaacttt 34299808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 390
Target Start/End: Original strand, 5482405 - 5482472
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    ||||||||||||||||  ||||||||||||||| |||||||||  || ||||| |||| ||||||||||    
T  5482405 gttaaggactttaaattgtaactttttatgaaattttgtgtaaccaatgcattggaaa-tgaaaacttt 5482472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 385
Target Start/End: Original strand, 44452038 - 44452102
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaattaa-cgcattagaaattgaaa 385  Q
    ||||| ||||||||||| ||| |||||||||||||||||||||| ||  ||||| ||||||||||    
T  44452038 gttaatgactttaaatagtaattttttatgaaagtttgtgtaataaagtgcattggaaattgaaa 44452102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 386
Target Start/End: Complemental strand, 32699450 - 32699401
Alignment:
Q  337 taataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaa 386  Q
    ||||||||||||||||||||||||| ||| |  ||||| |||||||||||    
T  32699450 taataactttttatgaaagtttgtgcaatcagtgcatttgaaattgaaaa 32699401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 5907934 - 5907874
Alignment:
Q  320 tagttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaat 380  Q
    ||||||||||||||||||| |||  |||||||||| || |||||||||  ||||| |||||    
T  5907934 tagttaaggactttaaatagtaaacttttatgaaaattagtgtaattagtgcattggaaat 5907874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 19620101 - 19620033
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    ||||||| | ||||||| |||||||||||||||  |||| |||| |  ||||| |||||||||||||||    
T  19620101 gttaagggccttaaatagtaactttttatgaaaagttgtataatcagtgcattggaaattgaaaacttt 19620033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 385
Target Start/End: Original strand, 26872781 - 26872845
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaat-taacgcattagaaattgaaa 385  Q
    ||||| ||||||||||||||| ||||| ||||||||||| ||||  || ||||| ||||||||||    
T  26872781 gttaaagactttaaataataattttttgtgaaagtttgtataataaaatgcattggaaattgaaa 26872845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 322 - 393
Target Start/End: Complemental strand, 39974001 - 39973930
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaactttaac 393  Q
    ||||| |||||||||| |||||||||||||||||||||| |||| || |||||  |||||||||||||||||    
T  39974001 gttaaagactttaaatgataactttttatgaaagtttgtataatcaatgcattgaaaattgaaaactttaac 39973930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 390
Target Start/End: Complemental strand, 48947315 - 48947245
Alignment:
Q  320 tagttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||| |  ||||| |||||||||||||||    
T  48947315 tagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattgaaaacttt 48947245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 38172754 - 38172686
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    |||||||||||||||| |||||||||||| |||||||||||||| |  |||||| ||||| ||||||||    
T  38172754 gttaaggactttaaatgataactttttataaaagtttgtgtaatcagtgcattaaaaattaaaaacttt 38172686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 390
Target Start/End: Complemental strand, 40286974 - 40286899
Alignment:
Q  315 gacattagttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    |||| |||||||| |||||||||| ||||||||||| |||||||||||| | |  ||||| |||||||||||||||    
T  40286974 gacactagttaagaactttaaatagtaactttttataaaagtttgtgtactcagtgcattggaaattgaaaacttt 40286899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 4041009 - 4040959
Alignment:
Q  315 gacattagttaaggactttaaataataactttttatgaaagtttgtgtaat 365  Q
    |||| |||||||||||||||||| |||||||||| ||||||||||||||||    
T  4041009 gacactagttaaggactttaaatgataactttttgtgaaagtttgtgtaat 4040959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 365
Target Start/End: Original strand, 33791736 - 33791779
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaat 365  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||    
T  33791736 gttaaagactttaaatagtaactttttatgaaagtttgtgtaat 33791779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 390
Target Start/End: Complemental strand, 40053401 - 40053334
Alignment:
Q  323 ttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    |||| ||| ||||||| |||||||||||||||||||||||||| || | |||  ||||||||||||||    
T  40053401 ttaatgaccttaaatagtaactttttatgaaagtttgtgtaataaatgtattgaaaattgaaaacttt 40053334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 393
Target Start/End: Original strand, 51904564 - 51904637
Alignment:
Q  320 tagttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaactttaac 393  Q
    ||||||||||| ||||||   || |||||||||||||||||||| ||   ||||| ||||||||||||||||||    
T  51904564 tagttaaggaccttaaattgcaattttttatgaaagtttgtgtagttggggcattggaaattgaaaactttaac 51904637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 363
Target Start/End: Complemental strand, 1656553 - 1656505
Alignment:
Q  315 gacattagttaaggactttaaataataactttttatgaaagtttgtgta 363  Q
    |||||||||||| ||| |||||||||||||||||||||||  |||||||    
T  1656553 gacattagttaatgaccttaaataataactttttatgaaaaattgtgta 1656505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 24034166 - 24034098
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    |||| |||||||||||| |||  |||||| | |||||||||||| |  |||||||||||||||||||||    
T  24034166 gttatggactttaaatagtaaacttttataagagtttgtgtaatcagtgcattagaaattgaaaacttt 24034098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 390
Target Start/End: Original strand, 35259043 - 35259111
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    ||||||||||||||||  ||||||||||  || || |||||||| | |||||| |||||||||||||||    
T  35259043 gttaaggactttaaatggtaactttttacaaatgtgtgtgtaatcagcgcattggaaattgaaaacttt 35259111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 390
Target Start/End: Complemental strand, 16114006 - 16113960
Alignment:
Q  344 tttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    |||||||||||||||||||||| |  ||||| |||||||||||||||    
T  16114006 tttttatgaaagtttgtgtaatcagtgcattggaaattgaaaacttt 16113960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 390
Target Start/End: Complemental strand, 44461689 - 44461616
Alignment:
Q  316 acattagttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    ||||| ||||| || |||||||| ||| ||||||||||| ||||||||||| | |||||| ||||| ||||||||    
T  44461689 acattggttaaagattttaaatagtaaatttttatgaaaatttgtgtaatt-atgcattaaaaattaaaaacttt 44461616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 390
Target Start/End: Complemental strand, 290701 - 290632
Alignment:
Q  321 agttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    ||||||| || |||||||||||||||| ||  ||||||||||||| |  |||||  ||||||||||||||    
T  290701 agttaagaacgttaaataataacttttcattgaagtttgtgtaatcagtgcattgtaaattgaaaacttt 290632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 365
Target Start/End: Original strand, 37188524 - 37188568
Alignment:
Q  320 tagttaaggactttaaataataactttttatgaaagtttgtgtaat 365  Q
    |||||||||||||||||| |||||||||| | ||||||||||||||    
T  37188524 tagttaaggactttaaat-ataactttttgtaaaagtttgtgtaat 37188568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 390
Target Start/End: Complemental strand, 36907907 - 36907841
Alignment:
Q  324 taaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    ||||||||||||||| ||||||||||| |||||||||||||| |  ||||| |||||||||||||||    
T  36907907 taaggactttaaatagtaactttttataaaagtttgtgtaatcattgcattggaaattgaaaacttt 36907841  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 390
Target Start/End: Original strand, 2376726 - 2376793
Alignment:
Q  323 ttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    |||||||| ||||||| ||||||||||||||||||| | |||||||  | ||||||||||||||||||    
T  2376726 ttaaggaccttaaatagtaactttttatgaaagtttatataattaatacgttagaaattgaaaacttt 2376793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 31844209 - 31844283
Alignment:
Q  317 cattagttaaggactttaaataataactttttatgaaagtttgtgtaattaa-cgcattagaaattgaaaacttt 390  Q
    |||| ||||||||||||||||| ||||||||||||||||||||| |||| ||  ||||| |||||| ||||||||    
T  31844209 cattggttaaggactttaaatagtaactttttatgaaagtttgtataatgaagtgcattggaaattcaaaacttt 31844283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 386
Target Start/End: Original strand, 1876474 - 1876543
Alignment:
Q  317 cattagttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaa 386  Q
    |||| ||||||||||||||||  ||| |||||||||||||||||||||| |  ||||| |||||||||||    
T  1876474 cattggttaaggactttaaatggtaattttttatgaaagtttgtgtaatcagtgcattggaaattgaaaa 1876543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 392
Target Start/End: Original strand, 35501064 - 35501135
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaattaa-cgcattagaaattgaaaactttaa 392  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||| ||  ||||| |||||| ||||||||||    
T  35501064 gttaaggactttaaatattaaatttttataaaagtttgtgtaataaagtgcattggaaattaaaaactttaa 35501135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 390
Target Start/End: Original strand, 14016862 - 14016932
Alignment:
Q  320 tagttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    ||||||||||| ||||||| ||| ||||||| ||||||||||| || |  ||||| |||||||||||||||    
T  14016862 tagttaaggaccttaaatagtaattttttataaaagtttgtgtgatcagtgcattggaaattgaaaacttt 14016932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 32271258 - 32271208
Alignment:
Q  343 ctttttatgaaagtttgtgtaattaacgcattagaaattgaaaactttaac 393  Q
    ||||||||| ||||||||||||| || | ||||||||||||||||||||||    
T  32271258 ctttttatggaagtttgtgtaatcaatgaattagaaattgaaaactttaac 32271208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 38047607 - 38047649
Alignment:
Q  323 ttaaggactttaaataataactttttatgaaagtttgtgtaat 365  Q
    ||||||||||||||| |||||||| ||||||||||||||||||    
T  38047607 ttaaggactttaaatgataactttatatgaaagtttgtgtaat 38047649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 12002376 - 12002308
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    ||||||||  ||||||| ||||||||||| ||| |||||||||| |  ||||| |||||||||||||||    
T  12002376 gttaaggatcttaaatagtaactttttataaaaatttgtgtaatcagtgcattggaaattgaaaacttt 12002308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 386
Target Start/End: Original strand, 1773791 - 1773862
Alignment:
Q  315 gacattagttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaa 386  Q
    ||||||| |||||||||||||||| |||  ||||||||||||  ||| |||||  ||||| |||||||||||    
T  1773791 gacattaattaaggactttaaatagtaaacttttatgaaagtaagtgcaattagtgcattggaaattgaaaa 1773862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 365
Target Start/End: Original strand, 32133692 - 32133735
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaat 365  Q
    |||||||| |||||||| ||| ||||||||||||||||||||||    
T  32133692 gttaaggaatttaaatagtaattttttatgaaagtttgtgtaat 32133735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 365
Target Start/End: Original strand, 34722774 - 34722817
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaat 365  Q
    ||||||||||||||||  ||||||||||||||||||||| ||||    
T  34722774 gttaaggactttaaatggtaactttttatgaaagtttgtataat 34722817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 365
Target Start/End: Original strand, 41959978 - 41960021
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaat 365  Q
    |||||||||||||||| |||| ||||||||||||||||| ||||    
T  41959978 gttaaggactttaaatgataattttttatgaaagtttgtataat 41960021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 30486719 - 30486650
Alignment:
Q  322 gttaaggactttaaataataacttttt-atgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    ||||||||||||||||| ||| ||||| || |||||||||||||| |  |||||| ||||| ||||||||    
T  30486719 gttaaggactttaaatagtaatttttttataaaagtttgtgtaatcagtgcattataaattaaaaacttt 30486650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 33865190 - 33865238
Alignment:
Q  317 cattagttaaggactttaaataataactttttatgaaagtttgtgtaat 365  Q
    ||||||||||||||  |||| ||||| ||||||| ||||||||||||||    
T  33865190 cattagttaaggaccataaaaaataattttttattaaagtttgtgtaat 33865238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 39594481 - 39594529
Alignment:
Q  317 cattagttaaggactttaaataataactttttatgaaagtttgtgtaat 365  Q
    |||| ||||||||  |||||| |||||||||||||||||||||| ||||    
T  39594481 cattggttaaggatcttaaatgataactttttatgaaagtttgtataat 39594529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 386
Target Start/End: Original strand, 27794849 - 27794920
Alignment:
Q  315 gacattagttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaa 386  Q
    |||||||||||||||||||||||  ||| ||||||| ||||||||| |||| | |||||| |||||||||||    
T  27794849 gacattagttaaggactttaaatggtaattttttataaaagtttgtataatcatcgcatttgaaattgaaaa 27794920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 38594928 - 38594992
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaa 386  Q
    |||||||||||||||| |||| ||||||||||| ||| | ||||||| ||||| |||||||||||    
T  38594928 gttaaggactttaaatgataaatttttatgaaaatttatataattaatgcattggaaattgaaaa 38594992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 390
Target Start/End: Original strand, 14309106 - 14309152
Alignment:
Q  344 tttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    ||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  14309106 tttttatgaaaatttgtgtaattaatgcattggaaattgaaaacttt 14309152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 390
Target Start/End: Original strand, 16636658 - 16636728
Alignment:
Q  320 tagttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    ||||||||||| ||||||  ||||||||||| ||||||||||||||||  |||||  ||||||| ||||||    
T  16636658 tagttaaggaccttaaatggtaactttttataaaagtttgtgtaattagtgcattgaaaattgacaacttt 16636728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 393
Target Start/End: Complemental strand, 28639660 - 28639590
Alignment:
Q  324 taaggactttaaataataactttttatgaaagtttgtgtaattaa-cgcattagaaattgaaaactttaac 393  Q
    |||||||||||||||| || ||||||| |||||||||||||| ||  ||||| |||  |||||||||||||    
T  28639660 taaggactttaaataacaattttttataaaagtttgtgtaataaagtgcattggaagctgaaaactttaac 28639590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 385
Target Start/End: Complemental strand, 31889707 - 31889662
Alignment:
Q  340 taactttttatgaaagtttgtgtaattaacgcattagaaattgaaa 385  Q
    ||||||||||||||| | |||||||| || ||||||||||||||||    
T  31889707 taactttttatgaaaatatgtgtaatcaatgcattagaaattgaaa 31889662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 5758670 - 5758630
Alignment:
Q  323 ttaaggactttaaataataactttttatgaaagtttgtgta 363  Q
    |||||||||||||||  ||| ||||||||||||||||||||    
T  5758670 ttaaggactttaaatggtaagtttttatgaaagtttgtgta 5758630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 390
Target Start/End: Original strand, 29716761 - 29716830
Alignment:
Q  322 gttaaggactttaaataataactttttatgaaagtttgtgtaattaa-cgcattagaaattgaaaacttt 390  Q
    ||||||||||||||||  |||| ||||||||||||||||||||| ||  ||||| |||||||||||||||    
T  29716761 gttaaggactttaaatggtaaccttttatgaaagtttgtgtaataaagtgcattggaaattgaaaacttt 29716830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 390
Target Start/End: Complemental strand, 10364855 - 10364784
Alignment:
Q  319 ttagttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaacttt 390  Q
    |||||||||||| ||||||| ||| |||||||||||||| || |||| |  |||||  ||||||||||||||    
T  10364855 ttagttaaggaccttaaatagtaaatttttatgaaagttcgtataatcagtgcattgtaaattgaaaacttt 10364784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 26187452 - 26187494
Alignment:
Q  323 ttaaggactttaaataataactttttatgaaagtttgtgtaat 365  Q
    |||||||||||||||  ||| ||||||||||||||||||||||    
T  26187452 ttaaggactttaaatgttaattttttatgaaagtttgtgtaat 26187494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 390
Target Start/End: Complemental strand, 27752767 - 27752687
Alignment:
Q  315 gacattagttaaggactttaaataataact---ttttatgaaagtttgtgtaattaa-cgcattag-aaattgaaaacttt 390  Q
    ||||||| ||||||||||||||||||||||   |||| | |||||||||||||| ||  ||||||| ||||||||||||||    
T  27752767 gacattaattaaggactttaaataataactttttttttttaaagtttgtgtaataaagtgcattagaaaattgaaaacttt 27752687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 392
Target Start/End: Original strand, 34552319 - 34552390
Alignment:
Q  322 gttaaggactttaaataataac-tttttatgaaagtttgtgtaattaa-cgcattagaaattgaaaactttaa 392  Q
    |||||||||||||||| | ||| |||||||||||| ||||||||| ||  ||||| |||||||||||||||||    
T  34552319 gttaaggactttaaatgacaacttttttatgaaag-ttgtgtaataaagtgcattggaaattgaaaactttaa 34552390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 19678 - 19605
Alignment:
Q  320 tagttaaggactttaaataataactttttatgaaagtttgtgtaattaacgcattagaaattgaaaactttaac 393  Q
    ||||||| ||| |||||| |||||||||||||||| ||||||||||  |   |||| |||||||||||||||||    
T  19678 tagttaaagaccttaaatgataactttttatgaaaatttgtgtaatcgatatattaaaaattgaaaactttaac 19605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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