View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6691_high_2 (Length: 311)

Name: NF6691_high_2
Description: NF6691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6691_high_2
NF6691_high_2
[»] chr4 (15 HSPs)
chr4 (1-308)||(15740006-15740313)
chr4 (1-240)||(1828588-1828827)
chr4 (1-308)||(19755047-19755359)
chr4 (1-308)||(19784447-19784759)
chr4 (1-308)||(7403698-7404005)
chr4 (4-302)||(47685946-47686244)
chr4 (1-308)||(23642639-23642946)
chr4 (1-308)||(13270939-13271246)
chr4 (1-308)||(47418590-47418896)
chr4 (125-308)||(159863-160046)
chr4 (174-306)||(20788501-20788633)
chr4 (139-236)||(12697670-12697767)
chr4 (112-236)||(8360957-8361081)
chr4 (101-212)||(20002599-20002710)
chr4 (139-285)||(4548405-4548551)
[»] chr3 (15 HSPs)
chr3 (1-308)||(34332863-34333170)
chr3 (4-311)||(40930579-40930886)
chr3 (1-308)||(2364062-2364369)
chr3 (1-308)||(19920277-19920584)
chr3 (1-308)||(10323619-10323926)
chr3 (1-302)||(7312568-7312868)
chr3 (1-278)||(7032133-7032410)
chr3 (137-267)||(35214555-35214685)
chr3 (1-201)||(26771037-26771237)
chr3 (112-236)||(36801234-36801358)
chr3 (130-236)||(7031194-7031300)
chr3 (139-236)||(33496404-33496501)
chr3 (139-285)||(12342411-12342557)
chr3 (139-212)||(11203700-11203773)
chr3 (143-236)||(29523935-29524028)
[»] chr8 (18 HSPs)
chr8 (1-308)||(13396173-13396480)
chr8 (1-308)||(32266349-32266656)
chr8 (1-308)||(41665417-41665724)
chr8 (1-296)||(9922398-9922693)
chr8 (1-308)||(8299588-8299895)
chr8 (1-308)||(7924171-7924478)
chr8 (1-308)||(171888-172195)
chr8 (125-308)||(20496869-20497052)
chr8 (168-308)||(32567480-32567620)
chr8 (139-281)||(5181481-5181624)
chr8 (1-170)||(13200046-13200215)
chr8 (31-170)||(2529809-2529948)
chr8 (127-236)||(2170197-2170306)
chr8 (130-236)||(20824153-20824259)
chr8 (139-236)||(37433989-37434086)
chr8 (1-201)||(34137011-34137211)
chr8 (1-236)||(43270307-43270542)
chr8 (139-236)||(17699339-17699436)
[»] chr7 (11 HSPs)
chr7 (1-308)||(11277300-11277607)
chr7 (5-308)||(37919329-37919632)
chr7 (1-308)||(29967760-29968067)
chr7 (1-308)||(47876768-47877075)
chr7 (1-308)||(235485-235794)
chr7 (1-283)||(17720445-17720727)
chr7 (1-308)||(4938176-4938483)
chr7 (69-308)||(31177421-31177660)
chr7 (1-171)||(25619381-25619551)
chr7 (151-236)||(18530367-18530452)
chr7 (140-212)||(37254639-37254711)
[»] chr5 (20 HSPs)
chr5 (4-308)||(8227811-8228115)
chr5 (1-308)||(23238168-23238476)
chr5 (1-296)||(28535723-28536018)
chr5 (9-311)||(35983847-35984149)
chr5 (1-308)||(12824984-12825291)
chr5 (1-308)||(27117209-27117516)
chr5 (1-283)||(19255170-19255453)
chr5 (1-308)||(30732362-30732669)
chr5 (5-308)||(42927916-42928219)
chr5 (1-308)||(42513505-42513812)
chr5 (59-311)||(12820055-12820307)
chr5 (125-311)||(3418565-3418751)
chr5 (189-311)||(25824793-25824915)
chr5 (130-236)||(25857601-25857707)
chr5 (1-92)||(31641513-31641603)
chr5 (130-236)||(8300359-8300465)
chr5 (112-201)||(33385533-33385622)
chr5 (112-194)||(10776663-10776745)
chr5 (139-236)||(27766900-27766996)
chr5 (256-309)||(32228588-32228641)
[»] chr6 (16 HSPs)
chr6 (3-308)||(24767474-24767779)
chr6 (1-244)||(2553486-2553729)
chr6 (122-308)||(21168010-21168196)
chr6 (1-308)||(12733910-12734217)
chr6 (1-305)||(18651282-18651586)
chr6 (151-283)||(5734439-5734571)
chr6 (1-203)||(14373039-14373241)
chr6 (1-236)||(20883081-20883316)
chr6 (130-236)||(17573832-17573938)
chr6 (130-236)||(17579258-17579364)
chr6 (1-97)||(21168194-21168291)
chr6 (139-236)||(21630295-21630392)
chr6 (139-236)||(17606520-17606617)
chr6 (1-201)||(15958861-15959061)
chr6 (139-201)||(10577435-10577497)
chr6 (130-236)||(11462270-11462375)
[»] scaffold0472 (1 HSPs)
scaffold0472 (1-283)||(3062-3344)
[»] chr1 (12 HSPs)
chr1 (1-308)||(51052265-51052572)
chr1 (152-311)||(6259599-6259758)
chr1 (1-308)||(11909153-11909460)
chr1 (1-308)||(6050387-6050695)
chr1 (1-308)||(35540834-35541141)
chr1 (158-308)||(4842189-4842339)
chr1 (229-308)||(26059676-26059755)
chr1 (1-201)||(47623125-47623323)
chr1 (139-285)||(43388175-43388321)
chr1 (130-236)||(16917986-16918092)
chr1 (1-212)||(37191258-37191469)
chr1 (234-283)||(13352124-13352173)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-308)||(105891-106198)
[»] scaffold0369 (1 HSPs)
scaffold0369 (1-308)||(11253-11560)
[»] chr2 (7 HSPs)
chr2 (1-283)||(41206826-41207108)
chr2 (1-308)||(4551954-4552261)
chr2 (3-279)||(15917468-15917744)
chr2 (1-235)||(12645394-12645628)
chr2 (1-203)||(28252610-28252812)
chr2 (1-201)||(17765010-17765210)
chr2 (130-236)||(11000127-11000233)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 15740313 - 15740006
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||  ||||||||||||||| ||||||| |||  |||||||||||||    
T  15740313 tggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgcgagatcggttacctacaaaaaataatttgacaagccgtggcattttac 15740214  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15740213 ctttggaggcgcggttgtgtgtttctgggtgtgggaatgttaaagatgttaatcatttgtttttgtcttgtctaacttttggtgccttatggccattggt 15740114  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtct 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | ||||||||||||||    
T  15740113 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcagatcattttttgcaatttattaattacgcaggttgttcgagagggagacggtct 15740014  T
Q  301 tttttcca 308  Q
    || |||||    
T  15740013 ttcttcca 15740006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 1828588 - 1828827
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||    
T  1828588 tggcataaacaggttcctctcaaagtatctatccttgcttggagactattgcgagataggttacctacaaaaactaatttggcaaaccgtggcattttac 1828687  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||    
T  1828688 ctttggaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttgatcatttgtttttgtcttgtgcaacttttggtgctttatgaccattggt 1828787  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatca 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1828788 gcgagcatggctaggagtggtaggggtcgattctcaatca 1828827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 19755359 - 19755047
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcatttta- 99  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||  || ||||  ||||||||||||||| |||||||||||| |||| |||||||     
T  19755359 tggcataaacaggttcctctcaaagtatctatccttgcttggcgactcctgagagatcggttacctacaaaaaataatttggcaaaccgtgacattttat 19755260  T
Q  100 --cctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccatt 197  Q
      ||| || |||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||| |||| |||||| || |    
T  19755259 tacctttggaggcgcggttgtgtgtttctggatgtgggagcgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggtcaat 19755160  T
Q  198 ggtgcgagcatggctaggagtgg--taggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagac 295  Q
    |||||| ||||||||||||||||  |||||||||| ||||||||||||||| |||||  ||||||||||||||||||||||||||||||| || || |||    
T  19755159 ggtgcgggcatggctaggagtggtataggggtcgaatctcaatcaacttcagatcattgtttgcaatttattaattacgcaggttgtttgagaaggcgac 19755060  T
Q  296 ggtcttttttcca 308  Q
    ||||||| |||||    
T  19755059 ggtctttcttcca 19755047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 19784447 - 19784759
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcatttta- 99  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||  || ||||  ||||||||||||||| |||||||||||| |||| |||||||     
T  19784447 tggcataaacaggttcctctcaaagtatctatccttgcttggcgactcctgagagatcggttacctacaaaaaataatttggcaaaccgtgacattttat 19784546  T
Q  100 --cctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccatt 197  Q
      ||| || |||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||| |||| |||||| || |    
T  19784547 tacctttggaggcgcggttgtgtgtttctggatgtgggagcgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggtcaat 19784646  T
Q  198 ggtgcgagcatggctaggagtgg--taggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagac 295  Q
    |||||| ||||||||||||||||  |||||||||| ||||||||||||||| |||||  ||||||||||||||||||||||||||||||| || || |||    
T  19784647 ggtgcgggcatggctaggagtggtataggggtcgaatctcaatcaacttcagatcattgtttgcaatttattaattacgcaggttgtttgagaaggcgac 19784746  T
Q  296 ggtcttttttcca 308  Q
    ||||||| |||||    
T  19784747 ggtctttcttcca 19784759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 7404005 - 7403698
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    ||||||||||| |||| | ||||| | ||||||||||||||| ||||  || | ||  |||||||||||||||  ||||||||||| |||||||||||||    
T  7404005 tggcataaacaagttcatttcaaagtctctatccttgcttggcgacttctgagggatcggttacctacaaaaaagaatttggcaaaccgtggcattttac 7403906  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
     | || |||||||||||||||| ||||| || ||||| ||||||||||| |||||||||||||||||||||  ||||||| |||||||||||||||||||    
T  7403905 gtttggaggcgcggttgtgtgtctctggatgcgggaacgttgaagatgtcaatcatttgtttttgtcttgtccaacttttagtgccttatggccattggt 7403806  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtct 300  Q
    | | |||||||| ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||||| | ||||| |||| |||    
T  7403805 gtgggcatggctcggagtggtaggggtcgactctcaatcaacttcagatcattttttgcaatttattaattatgcaggttgttcgagagggcgacgttct 7403706  T
Q  301 tttttcca 308  Q
    ||||||||    
T  7403705 tttttcca 7403698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 4 - 302
Target Start/End: Original strand, 47685946 - 47686244
Alignment:
Q  4 cataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttacctg 103  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| ||| ||||  ||||||||||||||  |||||||||||| |||||||||||| |||    
T  47685946 cataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagatcggttacctacaaaacataatttggcaaaccgtggcattttatctg 47686045  T
Q  104 tgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcg 203  Q
    || ||| |||||| ||||||||||| ||||||||||| |||||||||  || ||||||||||||||||| ||||||| |||| ||||||||  |||||||    
T  47686046 tggaggagcggttatgtgtttctggatgtgggaatgtcgaagatgtttctcgtttgtttttgtcttgtgcaacttttagtgcattatggccgatggtgcg 47686145  T
Q  204 agcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtcttt 302  Q
     |  ||| ||||||||||||||||||| ||||||||||||||| ||||| |  |||||||||||||||| ||||||||||   ||||| ||||||||||    
T  47686146 ggattggttaggagtggtaggggtcgactctcaatcaacttcagatcatttggtgcaatttattaattatgcaggttgttcaagagggtgacggtcttt 47686244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 23642639 - 23642946
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||| ||||||||| | ||||||||||||||| ||||| || | ||  |||||||||||||| ||||||||||||||||||||||| ||     
T  23642639 tggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctat 23642738  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| ||| |||||| || ||| |||| ||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||| ||||||||  ||||    
T  23642739 ctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggt 23642838  T
Q  201 gcgagca-tggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtc 299  Q
    ||| ||| ||| ||||||||||||| ||||| ||||||||||||||| ||||  || ||||||||||| |||| |||||||||| | ||||| |||||||    
T  23642839 gcg-gcattggttaggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtc 23642937  T
Q  300 ttttttcca 308  Q
    ||| |||||    
T  23642938 tttcttcca 23642946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 13270939 - 13271246
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||| ||||||||| | ||||||||||||||| ||||| || | ||  |||||||||||||| ||||||||||||||||||||||| ||     
T  13270939 tggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctat 13271038  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| ||| |||||| || ||| |||| ||||||| ||| |||||||||| | |||| ||||||||||||| |||||||||||| ||||||||  ||||    
T  13271039 ctgtggaggagcggttatgagttactggatgtgggattgtcgaagatgttactaatttatttttgtcttgtgcaacttttggtgcattatggccgatggt 13271138  T
Q  201 gcgagca-tggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtc 299  Q
    ||| ||| ||| ||||||||||||| ||||| ||||||||||||||| ||||  || ||||||||||| |||| |||||||||| | ||||| |||||||    
T  13271139 gcg-gcattggttaggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtc 13271237  T
Q  300 ttttttcca 308  Q
    ||| |||||    
T  13271238 tttcttcca 13271246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 47418896 - 47418590
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||| || | ||  |||||||||||||| |||||||||||| |||||||||| ||     
T  47418896 tggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagggatcggttacctacaaaacttaatttggcaactcgtggcattctat 47418797  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||| | ||| |||||| || ||| | || ||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||| ||||||||  ||||    
T  47418796 ctggggaggagcggttatgcgttgcaggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggt 47418697  T
Q  201 gcgagca-tggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtc 299  Q
    ||| ||| ||| ||||||| ||||| ||||| ||||||||||||||| ||||  || ||||||||||  | || |||||||||| | ||||| |||||||    
T  47418696 gcg-gcattggttaggagt-gtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttatacaatatgcaggttgttcgagagggcgacggtc 47418599  T
Q  300 ttttttcca 308  Q
    ||| |||||    
T  47418598 tttcttcca 47418590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 125 - 308
Target Start/End: Original strand, 159863 - 160046
Alignment:
Q  125 ctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagca-tggctaggagtggtag 223  Q
    |||| ||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||| ||||||||  ||||||| ||| ||| ||| ||||||||    
T  159863 ctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcg-gcattggttagaagtggtag 159961  T
Q  224 gggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtcttttttcca 308  Q
    | ||||| ||||||||||||||| ||||  || ||||||||||| |||| |||||||||| | ||||| |||||||||| |||||    
T  159962 gtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttcca 160046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 174 - 306
Target Start/End: Original strand, 20788501 - 20788633
Alignment:
Q  174 aacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattac 273  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||| | |||||||||||||||||     
T  20788501 aacttttagcgccttatggccattggtgcgagcatggctaggagtggtcggggtcgactctcaatcaacttcagatcatttgttgcaatttattaattat 20788600  T
Q  274 gcaggttgtttgggagggagacggtcttttttc 306  Q
    | |||||||| | |||||  ||| |||||||||    
T  20788601 gtaggttgttcgagagggcaacgatcttttttc 20788633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 12697767 - 12697670
Alignment:
Q  139 gttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctca 236  Q
    ||||||||||| |||||||| ||||||||||||  || ||||||||| |||||||| |||||||| || ||||| || || | |||||||||||||||    
T  12697767 gttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattatggcctttggtgcgggcttggcttggtgtcgaaggggtcgattctca 12697670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 8361081 - 8360957
Alignment:
Q  112 cggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggc 211  Q
    ||||| ||||| || || |||||| | ||||||||||| |||||||| ||||||||||||  || ||||||||| || ||||| |||||||| || ||||    
T  8361081 cggttttgtgtatcgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtgcgggcttggc 8360982  T
Q  212 taggagtggtaggggtcgattctca 236  Q
    | || || | |||||| ||||||||    
T  8360981 ttggtgtcgaaggggtagattctca 8360957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 20002710 - 20002599
Alignment:
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| |||| ||||| |||||  | || |||||| ||||||||||||| |||||| ||||||||||||||  |  ||| ||||| || |||||  ||||    
T  20002710 ctgtggaggctcggttttgtgtcacgggatgtgggcatgttgaagatgtgaatcatatgtttttgtcttgtccatttttcggtgcattgtggcctatggt 20002611  T
Q  201 gcgagcatggct 212  Q
    ||| ||||||||    
T  20002610 gcgggcatggct 20002599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 285
Target Start/End: Original strand, 4548405 - 4548551
Alignment:
Q  139 gttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctcaat 238  Q
    ||||||||||| |||||||| |||||||||||   || ||||||||| || |||||  ||||| | || ||||| || || | |||||||||||||||      
T  4548405 gttgaagatgtgaatcatttatttttgtcttgcccaatttttggtgcattgtggcctctggtgtgggcttggcttggtgtcgaaggggtcgattctcata 4548504  T
Q  239 caacttcatatcatcttttgcaatttattaattacgcaggttgtttg 285  Q
    | |  ||| ||||| || ||||||||||| | || |||||| |||||    
T  4548505 ctatctcagatcattttgtgcaatttattgaatatgcaggtggtttg 4548551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 34332863 - 34333170
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||||||| |||||||||||||||||  |||  || ||||  | ||||||||||||| |||||||||||| |||||||||||||    
T  34332863 tggcataaacaggttcctctcaaagtatctatccttgcttggcaacttctgagagatcgattacctacaaaaaataatttggcaaaccgtggcattttac 34332962  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||    
T  34332963 ctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggt 34333062  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtct 300  Q
    ||| |||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||| | ||||| ||||||||    
T  34333063 gcgggcatggctaggagtggtaggggtcgactctcaatcaacttcaaatcattttttgcaatttattaattacgcaggttgttcgagagggcgacggtct 34333162  T
Q  301 tttttcca 308  Q
    || |||||    
T  34333163 ttcttcca 34333170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 4 - 311
Target Start/End: Original strand, 40930579 - 40930886
Alignment:
Q  4 cataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttacctg 103  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| ||| | ||  ||||||||||||||| |||||||||||| |||||| ||||||||     
T  40930579 cataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagggattggttacctacaaaaaataatttggcaaaccgtggccttttacctt 40930678  T
Q  104 tgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcg 203  Q
    || |||||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||||  ||||||| |||||||||||||| |||||||    
T  40930679 tggaggcgcggttgtgtgtttctggttgtgggaacgtcgaagatgtcaatcatttgtttttgtcttgttcaacttttagtgccttatggccaatggtgcg 40930778  T
Q  204 agcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtctttt 303  Q
     |||||||| ||||||||||||||||| ||||||||||||||  ||||| ||||||||||||||||||| |||||||||| | ||||| |||| |||||     
T  40930779 ggcatggcttggagtggtaggggtcgactctcaatcaacttcggatcattttttgcaatttattaattatgcaggttgttcgagagggtgacgttctttc 40930878  T
Q  304 ttccattt 311  Q
    || |||||    
T  40930879 tttcattt 40930886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 2364369 - 2364062
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||| || | ||  |||||||||||||| ||||||||||||||||||||||| ||     
T  2364369 tggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctat 2364270  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| ||| |||||| || ||| |||| ||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||| ||||||||  ||||    
T  2364269 ctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggt 2364170  T
Q  201 gcgagca-tggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtc 299  Q
    ||| ||| ||| ||||||||||||| ||||| ||||||||||||||| ||||  || ||||||||||| |||| |||||||||| | ||||| |||||||    
T  2364169 gcg-gcattggttaggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtc 2364071  T
Q  300 ttttttcca 308  Q
    ||| |||||    
T  2364070 tttcttcca 2364062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 19920277 - 19920584
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||  || | ||  |||||||||||||| ||||||||| |||||| |||||| ||     
T  19920277 tggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaaatcgaggcattctat 19920376  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| ||| |||||| ||||||||||| ||||||||||| ||||||| |  ||||||||||||||||||||||||||||||||| ||||||||  ||||    
T  19920377 ctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaagatgcttctcatttgtttttgtcttgtgtaacttttggtgcattatggccgatggt 19920476  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtct 300  Q
    ||| |  ||| |||| |||||||| ||||| |||| |||| ||||| ||||| ||  ||||||||| ||||| |||||||||| | ||||| ||||||||    
T  19920477 gcgggattggttaggcgtggtaggtgtcgactctcgatcatcttcagatcattttgagcaatttatcaattatgcaggttgttcgagagggcgacggtct 19920576  T
Q  301 tttttcca 308  Q
    || |||||    
T  19920577 ttcttcca 19920584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 10323619 - 10323926
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||| || | ||  |||||||||||||| |||||||||||| |||||||||| ||     
T  10323619 tggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagggatcggttacctacaaaacttaatttggcaactcgtggcattctat 10323718  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||| | | | |||||| || ||| |||| ||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||| ||||||||  ||||    
T  10323719 ctggggatgagcggttatgcgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggt 10323818  T
Q  201 gcgagca-tggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtc 299  Q
    ||| ||| ||| ||||||||||||| ||||| ||||||||||||||  ||||  || ||||||||||  | || |||||||||| | ||||| |||||||    
T  10323819 gcg-gcattggttaggagtggtaggtgtcgactctcaatcaacttctgatcactttgtgcaatttatacaatatgcaggttgttcgagagggcgacggtc 10323917  T
Q  300 ttttttcca 308  Q
    ||| |||||    
T  10323918 tttcttcca 10323926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 7312868 - 7312568
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||| || | ||  |||||||||||||| ||||||||||||||||||||||| |      
T  7312868 tggcataaacaggtacctctcaaagtatctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctgt 7312769  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| ||| |||| | ||||||||||| ||||||| ||| |||||||||  |||||||||||||||||||| |||||||||||| |||  |||  ||||    
T  7312768 ctgtggaggagcggctttgtgtttctggatgtgggattgtcgaagatgtttctcatttgtttttgtcttgtgcaacttttggtgcatta-agccgatggt 7312670  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtct 300  Q
    ||| |  ||| |||| |||||||| ||||| |||| |||||||||| ||||| ||  |||||||||| |||| |||||||||| | ||||| |||| |||    
T  7312669 gcgggattggttaggcgtggtaggtgtcgactctcgatcaacttcagatcattttgagcaatttatttattatgcaggttgttcgagagggcgacgatct 7312570  T
Q  301 tt 302  Q
    ||    
T  7312569 tt 7312568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 7032410 - 7032133
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    ||||| |||||||||||||||||||| ||||||||||| ||| ||||  || | ||  |||||||||||||||  ||| |||| ||| ||||  ||||||    
T  7032410 tggcacaaacaggttcctctcaaaatttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaattgtggtcttttac 7032311  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || | ||||||| |||||| || || || |||   || |||||||||| ||||||||| |||   ||    |||||  | || |||||| |   |||    
T  7032310 ctttggatgcgcggtcgtgtgtctcaggttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggt 7032211  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcagg 278  Q
    ||| |||||||| |||||||| |||||||| |||||||| |||||  || || | ||||||||||||||||| |||||    
T  7032210 gcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagg 7032133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 267
Target Start/End: Original strand, 35214555 - 35214685
Alignment:
Q  137 atgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctca 236  Q
    ||||||||||||| ||||||||||| |||||||||  || ||||||||| || |||||  ||||||| |||||||| || || | |||||| ||||||||    
T  35214555 atgttgaagatgtgaatcatttgttcttgtcttgtccaatttttggtgcattgtggcctatggtgcgggcatggcttggtgtcgaaggggtagattctca 35214654  T
Q  237 atcaacttcatatcatcttttgcaatttatt 267  Q
      | |  ||||||||| || |||||||||||    
T  35214655 tgctatctcatatcattttgtgcaatttatt 35214685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 26771037 - 26771237
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    ||||||||||||| |||||| ||| | ||||| ||| ||||| | || ||| | ||  | |||||||| |||   ||||||||||| ||||| ||  | |    
T  26771037 tggcataaacaggctcctcttaaagtctctattcttacttggcggcttttgagggatcgtttacctacgaaagcaaatttggcaaaccgtggtatcattc 26771136  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || ||| || |||||||||  |||| |||||| | || |||||||| ||||| ||||||||||||||   || |||| |||||||||||||||||||    
T  26771137 ctttggaggtgcagttgtgtgtcactggttgtgggcacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgccttatggccattggt 26771236  T
Q  201 g 201  Q
    |    
T  26771237 g 26771237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 36801234 - 36801358
Alignment:
Q  112 cggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggc 211  Q
    ||||| ||||| || || |||||| | ||||||||||| |||||||| ||||||||||||  || ||||||||| || ||||| |||||||| || ||||    
T  36801234 cggttttgtgtatcgggatgtgggcaggttgaagatgtaaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtgcgggcttggc 36801333  T
Q  212 taggagtggtaggggtcgattctca 236  Q
    | || || | |||||| ||||||||    
T  36801334 ttggtgtcgaaggggtagattctca 36801358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 7031194 - 7031300
Alignment:
Q  130 tgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcg 229  Q
    |||||| | ||||||||||| |||||||| ||||||||||||   ||||||||||| || |||||  ||||||| || ||||| || || | ||||||||    
T  7031194 tgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcg 7031293  T
Q  230 attctca 236  Q
    |||||||    
T  7031294 attctca 7031300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 33496501 - 33496404
Alignment:
Q  139 gttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctca 236  Q
    ||||||||||| |||||||| ||||||||||||  || ||||||||| || ||||| |||||||| || ||||| || || | |||||| ||||||||    
T  33496501 gttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggggtagattctca 33496404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 285
Target Start/End: Original strand, 12342411 - 12342557
Alignment:
Q  139 gttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctcaat 238  Q
    ||||||||||| |||||||| || || ||||||  || ||||||||| || ||||| |||||||| || ||||| || || | || ||||||||||||      
T  12342411 gttgaagatgtgaatcatttattcttctcttgtccaatttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaagaggtcgattctcata 12342510  T
Q  239 caacttcatatcatcttttgcaatttattaattacgcaggttgtttg 285  Q
    | |  ||| ||||| || ||||||||||| | || |||||| |||||    
T  12342511 ctatctcagatcattttgtgcaatttattgaatatgcaggtggtttg 12342557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 11203773 - 11203700
Alignment:
Q  139 gttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggct 212  Q
    ||||||||||| |||||||| ||||||||||||  || ||||||| | || ||||| |||||||| || |||||    
T  11203773 gttgaagatgtgaatcatttatttttgtcttgtccaatttttggttcattgtggcctttggtgcgggcttggct 11203700  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 29523935 - 29524028
Alignment:
Q  143 aagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctca 236  Q
    ||||||| |||||||| || |||||||||  || ||||||||| || ||||| |||||| | || ||||| || || | |||||||||||||||    
T  29523935 aagatgtgaatcatttattcttgtcttgtccaatttttggtgcattgtggcctttggtgtgggcttggcttggtgtcgaaggggtcgattctca 29524028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 13396480 - 13396173
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    ||||||||||| |||||||||||| ||||||||||||||||| ||||  || ||||  ||||||||||||||| |||||||||||| |||||||||||||    
T  13396480 tggcataaacaagttcctctcaaagtatctatccttgcttggcgactcctgagagatcggttacctacaaaaaataatttggcaaaccgtggcattttac 13396381  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||    
T  13396380 ctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggt 13396281  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtct 300  Q
    ||| |||||||||||||||||||||||||| ||||||||||||||| |||||  | ||||||||||||||||||||||||||||| || || ||||||||    
T  13396280 gcgggcatggctaggagtggtaggggtcgaatctcaatcaacttcagatcattgtctgcaatttattaattacgcaggttgtttgagaaggcgacggtct 13396181  T
Q  301 tttttcca 308  Q
    || |||||    
T  13396180 ttcttcca 13396173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 32266656 - 32266349
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||  |||||||||| |||| |||||||||||| |||||||||||||    
T  32266656 tggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatcggttacctacgaaaagtaatttggcaaaccgtggcattttac 32266557  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || |||||| ||||    
T  32266556 ctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattgtggccaatggt 32266457  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtct 300  Q
    ||||||||||||||||||||| || ||||||||||| ||||| ||| ||||| |||||||||||||||||||||||||||||| | ||||| | ||||||    
T  32266456 gcgagcatggctaggagtggtgggagtcgattctcattcaacctcagatcattttttgcaatttattaattacgcaggttgttcgagagggcgtcggtct 32266357  T
Q  301 tttttcca 308  Q
    || |||||    
T  32266356 ttcttcca 32266349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 41665417 - 41665724
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |  |  ||||   |||||||||||||| |||||||||||| | || ||||||||    
T  41665417 tggcataaacaggttcctctcaaagtatctatccttgcttggcgattcctaagagatcagttacctacaaaaaataatttggcaaaccatgacattttac 41665516  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||    
T  41665517 ctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggt 41665616  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtct 300  Q
    ||| ||||||||||||||||||||||| || ||||||||||||||| |||||  | ||||||||||||||||||||||||||||| || || |||| |||    
T  41665617 gcgggcatggctaggagtggtaggggttgaatctcaatcaacttcagatcattgtctgcaatttattaattacgcaggttgtttgagaaggcgacgatct 41665716  T
Q  301 tttttcca 308  Q
    || |||||    
T  41665717 ttcttcca 41665724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 9922693 - 9922398
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    ||||||| |||||||||||||||| | ||||||||||| ||  ||||  || | ||  ||||||||||||||  |||||||||||| |||||||||||||    
T  9922693 tggcatacacaggttcctctcaaagtttctatccttgcatgacgacttctgagggatcggttacctacaaaagataatttggcaaaccgtggcattttac 9922594  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || |||||||| ||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  9922593 ctctggaggcgcggatgtgtgtttctggttgtgggaatgtagaagatgtcaatcatttgtttttgtcttgtgcaacttttagtgccttatggccattggt 9922494  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacg 296  Q
    |||||||||||| |||||||||||||| || ||||||||||||||| ||||| |  |||||||||||||||| ||||| |||| | ||||| ||||    
T  9922493 gcgagcatggcttggagtggtaggggttgactctcaatcaacttcagatcatttagtgcaatttattaattatgcaggatgttcgagagggcgacg 9922398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 8299895 - 8299588
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||| || | ||  |||||||||||||| ||||||||||||||||||||||| ||     
T  8299895 tggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctat 8299796  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| ||| ||| || |||||| |||| ||||||| ||| |||||||||| ||||||||||||||| |||| |||||||||||| ||||||||  ||||    
T  8299795 ctgtggaggagcgattatgtgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcctgtgcaacttttggtgcattatggccgatggt 8299696  T
Q  201 gcgagca-tggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtc 299  Q
    ||| ||| ||| ||||||||||||| ||||| ||||||||||||||| ||||  || ||||||||||| |||| |||||||||| | ||||| |||||||    
T  8299695 gcg-gcattggttaggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtc 8299597  T
Q  300 ttttttcca 308  Q
    ||| |||||    
T  8299596 tttcttcca 8299588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 7924478 - 7924171
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||| ||||||||| | ||||||||||||||| ||||| || | ||  |||||||||||||| ||||||||||||||||||||||| ||     
T  7924478 tggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctat 7924379  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| ||| |||||| || ||| |||| ||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||| ||||||||  ||||    
T  7924378 ctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggt 7924279  T
Q  201 gcgagca-tggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtc 299  Q
    ||| ||| ||| ||||||||||||| ||||| ||||||||||||||| ||||  || ||||||||||| |||| |||||||||| | |||||  ||||||    
T  7924278 gcg-gcattggttaggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcaacggtc 7924180  T
Q  300 ttttttcca 308  Q
    ||| |||||    
T  7924179 tttcttcca 7924171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 172195 - 171888
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||  || | ||| ||||||| |||||| ||||||||| ||| |||| |||| ||     
T  172195 tggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggaccggttacccacaaaacttaatttggtaaaccgtgacattctat 172096  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || ||| |||||| ||||||||||| ||||| ||||| |||||||||  |||||||||||||||||||| ||||||||  || ||||||||  ||||    
T  172095 ctatggaggagcggttatgtgtttctggctgtggtaatgtcgaagatgtttctcatttgtttttgtcttgtgcaacttttgacgcattatggccgatggt 171996  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtct 300  Q
    ||| |  ||| ||||||||||||||||||| ||||||||||||||| || || || |||||||||||||||| || ||||||| | ||||| ||||||||    
T  171995 gcgggattggttaggagtggtaggggtcgactctcaatcaacttcagataattttgtgcaatttattaattatgccggttgttcgagagggcgacggtct 171896  T
Q  301 tttttcca 308  Q
    || |||||    
T  171895 ttcttcca 171888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 125 - 308
Target Start/End: Complemental strand, 20497052 - 20496869
Alignment:
Q  125 ctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcat-ggctaggagtggtag 223  Q
    |||| ||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||| ||||||||  ||||||| |||| || ||||||||||||    
T  20497052 ctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcg-gcattggttaggagtggtag 20496954  T
Q  224 gggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtcttttttcca 308  Q
    | ||||| ||||||||||||||| ||||  || ||||||||||| |||| |||||||||| | ||||| |||||||||| |||||    
T  20496953 gtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttcca 20496869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 168 - 308
Target Start/End: Original strand, 32567480 - 32567620
Alignment:
Q  168 ttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttatt 267  Q
    ||||||||||||| |||| ||||||||| |||||| |||||||||||||||||| || ||||||||||| ||||| ||| ||||| ||||||||||||||    
T  32567480 ttgtgtaacttttagtgcattatggccaatggtgccagcatggctaggagtggtgggagtcgattctcattcaacctcagatcattttttgcaatttatt 32567579  T
Q  268 aattacgcaggttgtttgggagggagacggtcttttttcca 308  Q
    ||||| ||||||||||   ||||| | |||||||| |||||    
T  32567580 aattatgcaggttgttcaagagggcgtcggtctttcttcca 32567620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 139 - 281
Target Start/End: Complemental strand, 5181624 - 5181481
Alignment:
Q  139 gttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctcaat 238  Q
    ||||||||||  |||||| |||||||||||||   ||||||||||||||| ||||||||||||   |||||||| || |||||||||||||| |||||      
T  5181624 gttgaagatgagaatcatatgtttttgtcttgcccaacttttggtgccttgtggccattggtgtaggcatggctcggtgtggtaggggtcgactctcaga 5181525  T
Q  239 caacttcatatcatcttttgc-aatttattaattacgcaggttg 281  Q
    ||||| || | ||| |||||| ||||||||||||||||||||||    
T  5181524 caactacaaaccattttttgcaaatttattaattacgcaggttg 5181481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 13200215 - 13200046
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||| ||| | || ||||||||||||   |||||| | ||  | ||||||||||||   ||||||||| | ||  | ||| |||    
T  13200215 tggcataaacaggttcctctaaaagtttcaatccttgcttggcagctattgagggatcgtttacctacaaaatacaatttggcagagcgcagaattctac 13200116  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttg 170  Q
    || || |||| ||||| |||||| ||||||||||| ||||||||||||| | |||| |||||||||||||    
T  13200115 ctatggaggctcggttttgtgttactgggtgtgggcatgttgaagatgtgactcatatgtttttgtcttg 13200046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 2529948 - 2529809
Alignment:
Q  31 atccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttacctgtgaaggcgcggttgtgtgtttctgggt 130  Q
    |||||||||||| | |||||| | ||  | ||||||||||||   ||||||| | ||||||| ||| ||| | || |||| ||||| |||||| | ||||    
T  2529948 atccttgcttggcggctattgagggatcgcttacctacaaaatacaatttggtagatcgtggaattctacttttggaggctcggttttgtgttacagggt 2529849  T
Q  131 gtgggaatgttgaagatgttaatcatttgtttttgtcttg 170  Q
    ||||| ||||||||||||| | ||||||||||||||||||    
T  2529848 gtgggcatgttgaagatgtgactcatttgtttttgtcttg 2529809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 2170306 - 2170197
Alignment:
Q  127 gggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtagggg 226  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||  || ||||||||| || |||||  ||||||| || ||||| || || | |||||    
T  2170306 gggtgtgggcaggttgaagatgtgaatcatttgtttttgtcttgtccaatttttggtgcattgtggcctatggtgcgggcttggcttggtgtcgaagggg 2170207  T
Q  227 tcgattctca 236  Q
    | ||||||||    
T  2170206 tagattctca 2170197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 20824259 - 20824153
Alignment:
Q  130 tgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcg 229  Q
    |||||| | ||||||||||| |||||||| ||||||||||||   ||||||||||| || |||||  ||||||| || ||||| || || | ||||||||    
T  20824259 tgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcg 20824160  T
Q  230 attctca 236  Q
    |||||||    
T  20824159 attctca 20824153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 37434086 - 37433989
Alignment:
Q  139 gttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctca 236  Q
    ||||||||||| |||||||| ||||||||||||  || ||||||||| || ||||| |||||||| || |||||  | || | |||||||||||||||    
T  37434086 gttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtgcgggcttggctttgtgtcgaaggggtcgattctca 37433989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 34137011 - 34137211
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||| ||||||||| | ||||| ||||||||| | ||  ||   ||  | |||||||| |||   ||||||||||| || || ||  | |    
T  34137011 tggcataaacaggtacctctcaaagtctctattcttgcttggcggcttatgatggatcgtttacctacgaaagaaaatttggcaaaccgcggtatcattc 34137110  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| ||| ||||||||||| | |||| ||||||   ||| || |||| ||||| ||||||||||||||   || |||||||||||| |||||||||||    
T  34137111 ctgtggaggggcggttgtgtgctactggttgtgggtgcgttcaaaatgtgaatcacttgtttttgtcttgcccaaattttggtgccttgtggccattggt 34137210  T
Q  201 g 201  Q
    |    
T  34137211 g 34137211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 43270542 - 43270307
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||| | ||| | ||||||||| ||||| |||| |||   ||  | || ||||| ||||  ||||||| | | ||||  ||| ||     
T  43270542 tggcataaacaggttcctttaaaagtttctatccttacttggcgactgttgaaggatcgtttgcctactaaaacaaatttggtagaacgtgagattctat 43270443  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| | || ||||| |||||  | || |||||| | ||||||||||| |||||||||||||||||||||  || ||||||||| || ||| |  ||||    
T  43270442 ctgtggaagctcggttttgtgtaacgggttgtgggcaggttgaagatgtgaatcatttgtttttgtcttgtccaatttttggtgcattgtggtctatggt 43270343  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctca 236  Q
    ||| || ||||| || || | |||||| ||||||||    
T  43270342 gcgggcttggcttggtgtcgaaggggtagattctca 43270307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 17699436 - 17699339
Alignment:
Q  139 gttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctca 236  Q
    ||||||||||| |||||||| ||||||||||||  || ||||||||| || || || |||||||| || ||||| || || | |||||| ||||||||    
T  17699436 gttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtgacctttggtgcgggcttggcttggtgtcgaaggggtagattctca 17699339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 11277300 - 11277607
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||| ||| ||||  |||||||||| |||| |||||||||||| |||||||||||||    
T  11277300 tggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagatcggttacctacgaaaaataatttggcaaaccgtggcattttac 11277399  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||| ||||    
T  11277400 ctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgttttagtcttgtgtaaattttagtgcattatggccaatggt 11277499  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtct 300  Q
    ||||||||||||||||||||| || ||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| | ||||| | ||||||    
T  11277500 gcgagcatggctaggagtggtgggagtcgattctcattcaacttcagatcattttttgcaatttattaattacgcaggttgttcgagagggcgtcggtct 11277599  T
Q  301 tttttcca 308  Q
    || |||||    
T  11277600 ttcttcca 11277607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 308
Target Start/End: Complemental strand, 37919632 - 37919329
Alignment:
Q  5 ataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttacctgt 104  Q
    |||||||||||||||||||| ||||||||||||||||| ||||  || ||||  ||||||||||||||| |||||||||||| ||| ||||||||||| |    
T  37919632 ataaacaggttcctctcaaagtatctatccttgcttggcgactcctgagagattggttacctacaaaaaataatttggcaaaccgttgcattttaccttt 37919533  T
Q  105 gaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcga 204  Q
    | |||||||||||||||||||| | |||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |||||||     
T  37919532 ggaggcgcggttgtgtgtttctagttgtgggaacgttgaagatgttaatcatttatttttgtcttgtgtaacttttagtgcattatggccaatggtgcgg 37919433  T
Q  205 gcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtcttttt 304  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |  |||||||||| |    
T  37919432 gcatggctaggagtggtaggggtcgaatctcaatcaacttcagatcattttttgcaatttattaattacgcaggttgtttgagaagatgacggtctttct 37919333  T
Q  305 tcca 308  Q
    ||||    
T  37919332 tcca 37919329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 29968067 - 29967760
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||||||| ||||||||||||||||  |||| ||| ||||  |||||||||| |||| |||||||||||| | |||||||||||    
T  29968067 tggcataaacaggttcctctcaaagtatctatccttgcttgaggacttttgagagatcggttacctacgaaaagtaatttggcaaaccatggcattttac 29967968  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||    
T  29967967 ctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgctttatggccaatggt 29967868  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtct 300  Q
    ||||||||||||||||||||| || || |||||||| ||||| | | ||||||||||||||||||| |||||||||||||||| | ||||  | ||||||    
T  29967867 gcgagcatggctaggagtggtgggagtagattctcattcaaccttagatcatcttttgcaatttatcaattacgcaggttgttcgagaggacgtcggtct 29967768  T
Q  301 tttttcca 308  Q
    || |||||    
T  29967767 ttcttcca 29967760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 47877075 - 47876768
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||  || ||||   |||||||||||||| |||||||||||| |||||||||||||    
T  47877075 tggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagagatcagttacctacaaaaaataatttggcaaaccgtggcattttac 47876976  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || |||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||  ||||||| |||| ||||| | |||| |    
T  47876975 ctttggaggcgcggttgtgtgtttctggatgcgggaacgttgaagatgttaatcatttgtttttgtcttgttcaacttttagtgcattatgacaattgat 47876876  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtct 300  Q
    ||| |||||||||||||||||||||||||| ||| ||||||||||| || || ||||||||||||||||||| |||||||||| | ||||| || |||||    
T  47876875 gcgggcatggctaggagtggtaggggtcgactcttaatcaacttcagattattttttgcaatttattaattatgcaggttgttcgagagggcgatggtct 47876776  T
Q  301 tttttcca 308  Q
    || |||||    
T  47876775 ttcttcca 47876768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 235485 - 235794
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaatta--atttggcaaatcgtggcatttt 98  Q
    |||||||||||||||| ||||||| | ||||||||||||||| ||||  || | ||  |||||||||||||||  |  |||||||||| |||||||||||    
T  235485 tggcataaacaggttcatctcaaagtctctatccttgcttggcgacttctgagggatcggttacctacaaaaaaaatcatttggcaaaccgtggcatttt 235584  T
Q  99 acctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattg 198  Q
    |||| || |||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||  ||||||| |||||||||||||| ||    
T  235585 acctttggaggcgcggttgtgtgtttctggttgcgagaacgttgaagatgttaatcatttgtttttgtcttgttcaacttttagtgccttatggccaatg 235684  T
Q  199 gtgcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggt 298  Q
    ||||| |||||||| ||||||||||||||||| |||||||||| |||| ||||| ||||||||||||||||||| |||||||||| | ||||| |||| |    
T  235685 gtgcgggcatggctcggagtggtaggggtcgactctcaatcaaattcagatcattttttgcaatttattaattatgcaggttgttcgagagggcgacgtt 235784  T
Q  299 cttttttcca 308  Q
    |||| |||||    
T  235785 ctttcttcca 235794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 17720727 - 17720445
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    ||||||| |||||||||||||||| | ||||||||||| ||| ||||  || | ||  ||||||||||||||  |||||||||||| |||||||||||||    
T  17720727 tggcatacacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaagataatttggcaaaccgtggcattttac 17720628  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || |||||||| ||||||||||| | ||||||||||  ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  17720627 ctctggaggcgcggatgtgtgtttctagttgtgggaatgaagaagatgttaatcatttgtttttgtcttgtgcaacttttagtgccttatggccattggt 17720528  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtt 283  Q
    || ||||||||| |||||||||||||| || ||||||||||||||| ||||| |  |||||||||||||||| ||||| ||||    
T  17720527 gcaagcatggcttggagtggtaggggttgactctcaatcaacttcagatcatttagtgcaatttattaattatgcaggatgtt 17720445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 4938176 - 4938483
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||| ||||||||| | ||||||||||||||| ||||| || | ||  |||||||||||||| ||||||||||||||||||||||| ||     
T  4938176 tggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctat 4938275  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| ||| |||||| || ||| |||| ||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||| ||||||||  ||||    
T  4938276 ctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggt 4938375  T
Q  201 gcgagca-tggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtc 299  Q
    ||| ||| ||| ||||||||||||| ||||| ||||||||||||||| ||||  || ||||||||||  | || |||||||||| | ||||| |||||||    
T  4938376 gcg-gcattggttaggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttatacaatatgcaggttgttcgagagggcgacggtc 4938474  T
Q  300 ttttttcca 308  Q
    ||| |||||    
T  4938475 tttcttcca 4938483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 69 - 308
Target Start/End: Original strand, 31177421 - 31177660
Alignment:
Q  69 aaaaattaatttggcaaatcgtggcattttacctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtct 168  Q
    |||| |||||||| |||||||||||||| ||  |||| ||| |||||| |||||| |||| ||||||| ||| |||||||||| ||||||||||||||||    
T  31177421 aaaacttaatttgacaaatcgtggcattctatatgtggaggagcggttatgtgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtct 31177520  T
Q  169 tgtgtaacttttggtgccttatggccattggtgcgagca-tggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttatt 267  Q
    |||| |||||||||||| ||||||||  ||||||| ||| ||| ||||||||||||| ||||| ||||||||||||||| ||||  || ||||||||||     
T  31177521 tgtgcaacttttggtgcattatggccgatggtgcg-gcattggttaggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttata 31177619  T
Q  268 aattacgcaggttgtttgggagggagacggtcttttttcca 308  Q
     |||| |||||||||| | | ||| |||||||||| |||||    
T  31177620 cattatgcaggttgttcgagtgggcgacggtctttcttcca 31177660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 25619551 - 25619381
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||| | ||| | ||||||||||||||| |  | ||| | ||  | |||||||| |||   || |||||| |||||||||||  |     
T  25619551 tggcataaacaggttcctttaaaagtttctatccttgcttggcggttgttgagggaacgattacctactaaatccaacttggcagatcgtggcattgcat 25619452  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgt 171  Q
    ||||| |||  || || |||||  | || |||||| ||||||||||||| |||||| ||||||||||||||    
T  25619451 ctgtggaggaccgattttgtgtcacaggatgtgggcatgttgaagatgtgaatcatatgtttttgtcttgt 25619381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 18530452 - 18530367
Alignment:
Q  151 aatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctca 236  Q
    |||||||||||||||||||||  || ||||||||| || |||||  ||||||| || ||||| || || | |||||| ||||||||    
T  18530452 aatcatttgtttttgtcttgtccaatttttggtgcattgtggcctatggtgcgggcttggcttggtgtcgaaggggtagattctca 18530367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 37254711 - 37254639
Alignment:
Q  140 ttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggct 212  Q
    |||||||||| |||||| ||||||||||||||  || ||| ||||| || |||||  ||||||| ||||||||    
T  37254711 ttgaagatgtgaatcatatgtttttgtcttgtccaattttcggtgcattgtggcctatggtgcgggcatggct 37254639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 308
Target Start/End: Complemental strand, 8228115 - 8227811
Alignment:
Q  4 cataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttacctg 103  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||| ||||  |||||||||| |||| |||||||||||| |||| ||||||||||     
T  8228115 cataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatcggttacctacgaaaagtaatttggcaaaccgtgacattttacctt 8228016  T
Q  104 tgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcg 203  Q
    || |||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||    
T  8228015 tggaggcgcggttgtgtgtttctggatgtgagaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcg 8227916  T
Q  204 agcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtctttt 303  Q
    |||||||||||||||||| || ||||||||||| ||||| ||| ||||| |||||||||||||||||||||||||||||| | ||||| | ||||||||     
T  8227915 agcatggctaggagtggtgggagtcgattctcattcaacctcagatcattttttgcaatttattaattacgcaggttgttcgagagggcgtcggtctttc 8227816  T
Q  304 ttcca 308  Q
    |||||    
T  8227815 ttcca 8227811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 23238476 - 23238168
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    ||||||||| |||||||||||||| | |||||||||||||||||||| ||| ||||  |||||||||| |||| |||||||||||| ||||||||||||     
T  23238476 tggcataaataggttcctctcaaagtttctatccttgcttggagacttttgagagatcggttacctacgaaaagtaatttggcaaaccgtggcattttag 23238377  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||    
T  23238376 ctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggt 23238277  T
Q  201 gcgagcatggctaggagtggtaggg-gtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtc 299  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||| ||  ||||| |||||||||||||||||||||||||||||| | ||||| | |||||    
T  23238276 gcgagcatggctaggagtggtggggagtcgattctcattcaacgtctgatcattttttgcaatttattaattacgcaggttgttcgagagggcgtcggtc 23238177  T
Q  300 ttttttcca 308  Q
    ||| |||||    
T  23238176 tttcttcca 23238168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 28535723 - 28536018
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    ||||||| |||||||||||||||| | ||||||||||||||| ||||  || | ||  ||||||||||||||| |||||||||||| |||||||||||||    
T  28535723 tggcatacacaggttcctctcaaagtttctatccttgcttggcgacttctgagggatcggttacctacaaaaaataatttggcaaaccgtggcattttac 28535822  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || |||||| | ||||||||||||| ||||||||||| ||||||||  ||||||||||||||||||||| ||||||| |||||||||||||| ||||    
T  28535823 ctttggaggcgcagatgtgtgtttctggttgtgggaatgtagaagatgtcgatcatttgtttttgtcttgtgcaacttttagtgccttatggccaatggt 28535922  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacg 296  Q
    ||| |||||||| |||||||||||||| || ||||||||||||||| ||||| || |||||||||||||||| || ||||||| | ||||| ||||    
T  28535923 gcgggcatggcttggagtggtaggggttgactctcaatcaacttcagatcattttgtgcaatttattaattatgctggttgttcgagagggcgacg 28536018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 9 - 311
Target Start/End: Original strand, 35983847 - 35984149
Alignment:
Q  9 acaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttacctgtgaag 108  Q
    |||||||||||||||| ||||||||||||||||| ||||  || |  |  ||||||||||||||| |||||||||||| | || |||||||||| || ||    
T  35983847 acaggttcctctcaaagtatctatccttgcttggcgacttctgaggaatcggttacctacaaaaaataatttggcaaaccatgacattttacctttggag 35983946  T
Q  109 gcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcat 208  Q
    |||||||||||||||| ||| ||||||||||| |||| ||| |||||||||||||||||||||| ||||||| |||||||||||||| ||||||| ||||    
T  35983947 gcgcggttgtgtgtttttggttgtgggaatgtagaagttgtcaatcatttgtttttgtcttgtgcaacttttagtgccttatggccaatggtgcgggcat 35984046  T
Q  209 ggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtcttttttcca 308  Q
    | || ||||||||||||||||| ||||||||||||||| ||||| || |||||||||||||||| |||||||||| | ||||| |||| ||||| || ||    
T  35984047 gacttggagtggtaggggtcgactctcaatcaacttcagatcattttatgcaatttattaattatgcaggttgttcgagagggcgacgttctttctttca 35984146  T
Q  309 ttt 311  Q
    |||    
T  35984147 ttt 35984149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 12825291 - 12824984
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    ||||||||||| |||||||||||| ||| ||||||||||||| ||||  || | ||  |||||||||||||| ||||||||||||||||||||||| ||     
T  12825291 tggcataaacaagttcctctcaaagtatgtatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctat 12825192  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| ||| |||||| ||||||||||| ||||||| ||| |||||||||  |||||||||||||||||||| |||||||||||| ||||||||  ||||    
T  12825191 ctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggt 12825092  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtct 300  Q
    ||| |  ||| |||| |||||||| ||||| |||| |||||||||| ||||| ||  ||||||||||||||| |||||||||| | ||||| ||||||||    
T  12825091 gcgggattggttaggcgtggtaggtgtcgactctcgatcaacttcagatcattttgagcaatttattaattatgcaggttgttcgagagggcgacggtct 12824992  T
Q  301 tttttcca 308  Q
    || |||||    
T  12824991 ttcttcca 12824984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 27117209 - 27117516
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||  || | ||| ||||||| |||||| ||||||||| ||| ||||||||| ||     
T  27117209 tggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggaccggttacccacaaaacttaatttggtaaaccgtggcattctat 27117308  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || ||| |||||| ||||||||||| ||||||||||| |||||||||  |||||||||||||||||||| ||||||||| || ||||||||  ||||    
T  27117309 ctatggaggagcggttatgtgtttctggctgtgggaatgtcgaagatgtttctcatttgtttttgtcttgtgcaacttttggagcattatggccgatggt 27117408  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtct 300  Q
    | | |  ||| ||||||||||||||||||| ||||||||||||||| ||||| || |||||||||||||||| |  ||||||| | ||||| ||||||||    
T  27117409 gtgggattggttaggagtggtaggggtcgactctcaatcaacttcagatcattttgtgcaatttattaattatgtcggttgttcgagagggcgacggtct 27117508  T
Q  301 tttttcca 308  Q
    || |||||    
T  27117509 ttcttcca 27117516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 19255170 - 19255453
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||| || |||||||| ||||||||||||||||| |  |  || | ||  ||||||||||||||| ||||||||||||| |||||||| | |    
T  19255170 tggcataaacagatttctctcaaagtatctatccttgcttggcggtttctgagggatcggttacctacaaaaaataatttggcaaattgtggcattattc 19255269  T
Q  101 ctgtgaag-gcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattgg 199  Q
    |  || || ||||||||||||||  |||| || ||| | ||||||||||| ||||||||||| |||||||||  ||||||||||||||||||| ||||||    
T  19255270 ccttggagcgcgcggttgtgtgtcactggatgcgggcacgttgaagatgtcaatcatttgttcttgtcttgtccaacttttggtgccttatggacattgg 19255369  T
Q  200 tgcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtt 283  Q
    |||| |||||||| |||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||    
T  19255370 tgcgggcatggctcggagtggtaggggtcgattctcaaacaacttcagatcattttttgcaatttattaattacgcaggttgtt 19255453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 30732362 - 30732669
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||||||| |||||||| |||||||| ||||  || | ||  |||||||||||||| ||||||||||||||||||||||| ||     
T  30732362 tggcataaacaggttcctctcaaagtatctatctttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctat 30732461  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| ||| |||||| ||||||||||| ||||||| ||| |||||||||  |||||||||||||||||||  |||||||||||| |||| |||  ||||    
T  30732462 ctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctcatttgtttttgtcttgtacaacttttggtgcattatagccgatggt 30732561  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtct 300  Q
    ||| |  ||| |||| |||||||| ||||| |||| |||||||||| ||||| ||  ||||||||||||||| |||||||||| | ||||| ||||||||    
T  30732562 gcgggattggttaggcgtggtaggtgtcgactctcgatcaacttcagatcattttgagcaatttattaattatgcaggttgttcgagagggcgacggtct 30732661  T
Q  301 tttttcca 308  Q
    || |||||    
T  30732662 ttcttcca 30732669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 5 - 308
Target Start/End: Complemental strand, 42928219 - 42927916
Alignment:
Q  5 ataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttacctgt 104  Q
    |||||||||||||||||||| | |||||||||| |||| | ||  || | ||  ||||| ||||||||| ||||||| ||||  |||||||||||||  |    
T  42928219 ataaacaggttcctctcaaagtctctatccttgtttggcggcttctgagggatcggttaactacaaaaaataatttgacaaactgtggcattttaccctt 42928120  T
Q  105 gaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcga 204  Q
    | ||| |||||||||||| ||||| || ||||| ||||||||||| ||||||||||| ||||| |||  ||||||| |||||||||| |||||||||||     
T  42928119 ggaggtgcggttgtgtgtctctggatgcgggaacgttgaagatgtcaatcatttgttcttgtcatgtccaacttttagtgccttatgaccattggtgcgg 42928020  T
Q  205 gcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtcttttt 304  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||||| | ||||| |||| || ||||    
T  42928019 gcatggctcggagtggtaggggtcgactctcaatcaacttcagatcattttttgcaatttattaattatgcaggttgttcgagagggcgacgttcatttt 42927920  T
Q  305 tcca 308  Q
    ||||    
T  42927919 tcca 42927916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 42513812 - 42513505
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||| ||||||||| | ||||||||||||||| ||||| || | ||  |||||||||||||| |||||||||||||||||| |||| ||     
T  42513812 tggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtgacattctat 42513713  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| ||| |||||| || ||| |||| ||||||| ||| |||||||||| |||||| ||||||||||||| |||||||||||| ||||||||  ||||    
T  42513712 ctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactcatttttttttgtcttgtgcaacttttggtgcattatggccgatggt 42513613  T
Q  201 gcgagca-tggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtc 299  Q
    ||| ||| ||| ||||||||||||| ||||| ||||||||||||||| ||||  || ||||||||||| |||| |||||||||| | ||||| |||||||    
T  42513612 gcg-gcattggttaggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtc 42513514  T
Q  300 ttttttcca 308  Q
    ||| |||||    
T  42513513 tttcttcca 42513505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 59 - 311
Target Start/End: Original strand, 12820055 - 12820307
Alignment:
Q  59 ggttacctacaaaaattaatttggcaaatcgtggcattttacctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcattt 158  Q
    |||||||||||||| ||||||||||||||||||||||| || ||||| ||| |||||| ||||||||||| ||||||| ||| ||||||||   ||||||    
T  12820055 ggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtctctcattt 12820154  T
Q  159 gtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttg 258  Q
    |||||||||||||| |||||||||||| ||||||||  ||||||| |  ||| |||| |||||||| ||||| |||| |||||||||| ||||| ||  |    
T  12820155 gtttttgtcttgtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtaggtgtcgactctcgatcaacttcagatcattttgag 12820254  T
Q  259 caatttattaattacgcaggttgtttgggagggagacggtcttttttccattt 311  Q
    |||||||||||||| |||||||||| | ||||| |||||||||| ||||||||    
T  12820255 caatttattaattatgcaggttgttcgagagggcgacggtctttcttccattt 12820307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 125 - 311
Target Start/End: Complemental strand, 3418751 - 3418565
Alignment:
Q  125 ctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcat-ggctaggagtggtag 223  Q
    |||| ||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||| ||||||||  ||||||| |||| || ||||||||||||    
T  3418751 ctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcg-gcattggttaggagtggtag 3418653  T
Q  224 gggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtcttttttccattt 311  Q
    | ||||| ||||||||||||||| ||||  || ||||||||||| |||| |||||||||| | ||||| |||||||||| ||||||||    
T  3418652 gtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccattt 3418565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 189 - 311
Target Start/End: Complemental strand, 25824915 - 25824793
Alignment:
Q  189 atggccattggtgcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttggga 288  Q
    ||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||||| | ||    
T  25824915 atggccaatggtgcgggcatggcttggagtggtaggggtcgactctcaatcaacttcagatcattttttgcaatttattaattatgcaggttgttcgaga 25824816  T
Q  289 gggagacggtcttttttccattt 311  Q
    ||| |||| ||||| || |||||    
T  25824815 gggcgacgttctttctttcattt 25824793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 25857601 - 25857707
Alignment:
Q  130 tgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcg 229  Q
    |||||| | ||||||||||| |||||||| |||||||||||| | |||||||||||||| |||||  ||||||| || ||||| || || | ||||||||    
T  25857601 tgtgggcaggttgaagatgtgaatcatttatttttgtcttgtttgacttttggtgccttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcg 25857700  T
Q  230 attctca 236  Q
    |||||||    
T  25857701 attctca 25857707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 31641603 - 31641513
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtgg 92  Q
    ||||||| |||||||||||| ||| | ||||||||||| ||||||||| || | ||  ||||||||||||||| |||||||||||| |||||    
T  31641603 tggcatacacaggttcctct-aaagtttctatccttgcatggagactactgagggatcggttacctacaaaaaataatttggcaaaccgtgg 31641513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 8300359 - 8300465
Alignment:
Q  130 tgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcg 229  Q
    |||||| | ||||||||||| |||||||| ||||||||||||   |||||||||||||| |||||  || |||| || ||||| || || | ||||||||    
T  8300359 tgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgccttgtggcctctgatgcgggcttggcttggtgtcgaaggggtcg 8300458  T
Q  230 attctca 236  Q
    |||||||    
T  8300459 attctca 8300465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 33385533 - 33385622
Alignment:
Q  112 cggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtg 201  Q
    ||||| ||||| || || |||||| | ||||||||||| |||||||| ||||||||||||  || ||||||||| || ||||| ||||||    
T  33385533 cggttttgtgtatcgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtg 33385622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 10776745 - 10776663
Alignment:
Q  112 cggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggcc 194  Q
    ||||| ||||| || || |||||| | ||||||||||| |||||||| ||||||||||||  || ||||||||| || |||||    
T  10776745 cggttttgtgtatcgggatgtgggcaagttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggcc 10776663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 27766996 - 27766900
Alignment:
Q  139 gttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctca 236  Q
    ||||||||||| |||||||| ||||||||||||  || ||||||||| || ||||| || ||||  || ||||| || || | |||||||||||||||    
T  27766996 gttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgctttgtggcc-tttgtgcaggcttggcttggtgtcgaaggggtcgattctca 27766900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 32228641 - 32228588
Alignment:
Q  256 ttgcaatttattaattacgcaggttgtttgggagggagacggtcttttttccat 309  Q
    ||||||||||||||||| |||||||||||| ||| | |||| || |||||||||    
T  32228641 ttgcaatttattaattatgcaggttgtttgagagcgcgacgttcctttttccat 32228588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 166; Significance: 7e-89; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 3 - 308
Target Start/End: Original strand, 24767474 - 24767779
Alignment:
Q  3 gcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttacct 102  Q
    |||||||||||||||| ||||| | ||||||||||||||  ||||  |  | ||  ||||||||||||||| ||||||||||||||||||||||||||||    
T  24767474 gcataaacaggttcctatcaaagtctctatccttgcttgacgacttcttagggatcggttacctacaaaaaataatttggcaaatcgtggcattttacct 24767573  T
Q  103 gtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgc 202  Q
     || |||||||||||||||||| ||| || ||||| ||||||||||||||| |||||||||||||||||  ||||||| |||||||||| ||||||||||    
T  24767574 ttggaggcgcggttgtgtgtttttggttgcgggaacgttgaagatgttaataatttgtttttgtcttgtccaacttttagtgccttatgaccattggtgc 24767673  T
Q  203 gagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtcttt 302  Q
    | |||||||| ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||||| | ||||| |||  |||||    
T  24767674 gggcatggctcggagtggtaggggtcgactctcaatcaacttcagatcattttttgcaatttattaattatgcaggttgttcgagagggcgacattcttt 24767773  T
Q  303 tttcca 308  Q
    ||||||    
T  24767774 tttcca 24767779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 2553729 - 2553486
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||| |||  |||  ||||||||||||||| |||||||||||| |||||||||||||    
T  2553729 tggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaaaccgtggcattttac 2553630  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || |||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| ||||    
T  2553629 ctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatgaccaatggt 2553530  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaactt 244  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||    
T  2553529 gcgggcatggctaggagtgataggggtcgattctcaatcaactt 2553486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 122 - 308
Target Start/End: Complemental strand, 21168196 - 21168010
Alignment:
Q  122 tttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggt 221  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  21168196 tttctgggtgtgggaatgttgaagatgttaatcatatgtttttgtcttgtgtaacttttggtgctttatggccattgatgcgagcatggctaggagtggt 21168097  T
Q  222 aggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtcttttttcca 308  Q
     |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||||||||||| |||||    
T  21168096 gggggtcgattctcaatcaacttcagatcattttttgcaatttattaattacgcaggttgttcgagagggagacggtctttcttcca 21168010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 12734217 - 12733910
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||  || | ||  |||||||||||||| ||||||||| ||  ||||||||| ||     
T  12734217 tggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaacccgtggcattctat 12734118  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || ||| |||||| ||||||||| | ||||||||||| |||||||||  |||||||||||||||||||| ||||||||| || ||||||||  ||||    
T  12734117 ctctggaggagcggttatgtgtttctagatgtgggaatgtcgaagatgtttctcatttgtttttgtcttgtgcaacttttggagcattatggccgatggt 12734018  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtct 300  Q
    ||  |  ||| ||||||||||||||||||| ||||||||||||||| ||||| || |||||||||||||||| || ||||||| | ||||| ||||||||    
T  12734017 gcaggattggttaggagtggtaggggtcgactctcaatcaacttcagatcattttgtgcaatttattaattatgccggttgttcgagagggcgacggtct 12733918  T
Q  301 tttttcca 308  Q
    || |||||    
T  12733917 ttcttcca 12733910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 18651282 - 18651586
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||||||| | ||||||||||||||| ||||  || | ||  ||||||||||||||| |||||||| ||| ||||| |||||||    
T  18651282 tggcataaacaggttcctctcaaagtctctatccttgcttggcgacttctgagggatcggttacctacaaaaaataatttggaaaaccgtgggattttac 18651381  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtt-tttgtcttgtgtaacttttggtgccttatggccattgg 199  Q
    || || | |||||||||||||| ||||| || ||||  ||||||||||| ||||| ||||| ||||| | ||  ||||||| | ||||||| ||||||||    
T  18651382 ctttggatgcgcggttgtgtgtctctggatgcgggaccgttgaagatgtcaatcacttgttctttgtgt-gtccaacttttagcgccttattgccattgg 18651480  T
Q  200 tgcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtc 299  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||| ||||| | ||||||||||||||||| |||||||||| | ||||| |||| ||    
T  18651481 tgcgagcatggctaggagtggtcggggtcgactctcaatcaacttcagatcatttgttgcaatttattaattatgcaggttgttcgagagggcgacgatc 18651580  T
Q  300 tttttt 305  Q
    ||||||    
T  18651581 tttttt 18651586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 151 - 283
Target Start/End: Original strand, 5734439 - 5734571
Alignment:
Q  151 aatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatc 250  Q
    |||||||||||||||||||||||||||||| |||| |||||  ||||||||||||||||||| ||||||||| |||| || ||||||||||||||| |||    
T  5734439 aatcatttgtttttgtcttgtgtaacttttagtgctttatgatcattggtgcgagcatggcttggagtggtaagggttgactctcaatcaacttcagatc 5734538  T
Q  251 atcttttgcaatttattaattacgcaggttgtt 283  Q
    || || |||||||||||||||| ||||||||||    
T  5734539 attttgtgcaatttattaattatgcaggttgtt 5734571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 14373039 - 14373241
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||| ||||| ||| ||||||| |||||||||   || ||| |  || | |||||||| |||   ||||||||||| ||||||||| |      
T  14373039 tggcataaacaggtacctctaaaagtatctattcttgcttggcagcttttgaggaacggcttacctacgaaaggaaatttggcaaaccgtggcattattt 14373138  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || ||| ||||||||||||||| || | |||| ||| ||||||||| |||||||||||||||||||||  |  |||||||||||||||| | |||||    
T  14373139 ctatggaggggcggttgtgtgtttccggttatgggcatgatgaagatgtaaatcatttgtttttgtcttgtccattttttggtgccttatggtctttggt 14373238  T
Q  201 gcg 203  Q
    |||    
T  14373239 gcg 14373241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 20883081 - 20883316
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    ||||||||| |||||||| | ||| | ||||||||||||||| | || ||| | ||  | |||||||| |||   || |||| | ||||||||||| ||     
T  20883081 tggcataaataggttcctttaaaagtttctatccttgcttggcggctgttgagggattgtttacctactaaatcgaacttggtagatcgtggcattatat 20883180  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| |||| ||||| |||||  | || |||||| ||||||||||| | |||||| ||||||||||||||  || ||| ||||| || |||||  ||||    
T  20883181 ctgtggaggctcggttttgtgtcacgggatgtgggcatgttgaagatatgaatcatatgtttttgtcttgtccaattttcggtgcattgtggcctatggt 20883280  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctca 236  Q
    |||  ||||||| || || | |||||| ||||||||    
T  20883281 gcggacatggcttggtgtcgaaggggtagattctca 20883316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 17573832 - 17573938
Alignment:
Q  130 tgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcg 229  Q
    |||||| | ||||||||||| |||||||| ||||||||||||   |||||||||||||| |||||  ||||||| || ||||| || || | ||||||||    
T  17573832 tgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgccttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcg 17573931  T
Q  230 attctca 236  Q
    |||||||    
T  17573932 attctca 17573938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 17579258 - 17579364
Alignment:
Q  130 tgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcg 229  Q
    |||||| | ||||||||||| |||||||| ||||||||||||   |||||||||||||| |||||  ||||||| || ||||| || || | ||||||||    
T  17579258 tgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgccttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcg 17579357  T
Q  230 attctca 236  Q
    |||||||    
T  17579358 attctca 17579364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 21168291 - 21168194
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctaca-aaaattaatttggcaaatcgtggcattt 97  Q
    ||||||||| |||||||||||||| |||||||||| ||||||||||| |||| |||  | ||||||||| ||||  || |||||||| ||||||||||    
T  21168291 tggcataaataggttcctctcaaagtatctatcctagcttggagacttttgcaagatcgattacctacaaaaaaaaaaattggcaaaccgtggcattt 21168194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 21630295 - 21630392
Alignment:
Q  139 gttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctca 236  Q
    ||||||||||| |||||||| ||||||||||||  || ||||||||| || ||||| |||||||| || ||||| || || | |||||||||||||||    
T  21630295 gttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgctttgtggcctttggtgcgggcttggcttggtgtcgaaggggtcgattctca 21630392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 17606520 - 17606617
Alignment:
Q  139 gttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctca 236  Q
    ||||||||||| |||||||| ||||||||||||  || ||||||||| || ||| | |||||||| || ||||| || || | |||||||||||||||    
T  17606520 gttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggtctttggtgcgggcttggcttggtgtcgaaggggtcgattctca 17606617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 15958861 - 15959061
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||| ||| | ||||| ||||||||| | || ||| | ||    |||||||| |||   ||||||||||| | ||| ||  | |    
T  15958861 tggcataaacaggttcctcttaaagtctctattcttgcttggcggcttttgagggatcatttacctacgaaagcaaatttggcaaaccatggtatcattc 15958960  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || ||| || |||||||||  |||  |||||| | || |||||||| ||||| |||||||| |||||   || ||||||||||||||||||||||||    
T  15958961 ctttggaggtgcagttgtgtgtcactgattgtgggcacgtggaagatgtgaatcacttgtttttatcttgcccaatttttggtgccttatggccattggt 15959060  T
Q  201 g 201  Q
    |    
T  15959061 g 15959061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 10577435 - 10577497
Alignment:
Q  139 gttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtg 201  Q
    ||||||||||| |||||||| ||||||||||||  || ||||||||| || ||||| ||||||    
T  10577435 gttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtg 10577497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 11462375 - 11462270
Alignment:
Q  130 tgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcg 229  Q
    |||||| ||||||||||||| |||||| ||||||||||||||  || ||| ||||| || | |||  ||||||| |||||||| || || | |||||| |    
T  11462375 tgtgggcatgttgaagatgtgaatcatatgtttttgtcttgtccaattttcggtgcattgt-gcctatggtgcgggcatggcttggtgtcgaaggggtag 11462277  T
Q  230 attctca 236  Q
    |||||||    
T  11462276 attctca 11462270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 3344 - 3062
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||| ||| | |||||||||||||||||||| ||| ||||  |||||||||| ||||  ||||||||||| | |||||||||||    
T  3344 tggcataaacaggttcctcttaaagtttctatccttgcttggagacttttgagagatcggttacctacgaaaagcaatttggcaaaccatggcattttac 3245  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||    
T  3244 ctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggt 3145  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtt 283  Q
    |||||||||| |||||||||| || ||||| ||||| || |  ||| ||||| ||||||||||||| ||||||||||||||||    
T  3144 gcgagcatggttaggagtggtgggagtcgactctcattctatctcagatcattttttgcaatttatcaattacgcaggttgtt 3062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 51052572 - 51052265
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||  || | ||  |||||||||||||| ||||||||||||||||||||||| ||     
T  51052572 tggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctat 51052473  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| ||| |||||| ||||||||||| ||||||| ||| |||||||||  |||||||||||||||||||| |||||||||||| ||||||||  ||||    
T  51052472 ctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggt 51052373  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtct 300  Q
    ||| |  ||| |||| |||||||| ||||| |||| |||||||||| ||||| ||  ||||||||||||||| |||||||||| | ||||| ||||||||    
T  51052372 gcgggattggttaggcgtggtaggtgtcgactctcgatcaacttcagatcattttgagcaatttattaattatgcaggttgttcgagagggcgacggtct 51052273  T
Q  301 tttttcca 308  Q
    || |||||    
T  51052272 ttcttcca 51052265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 152 - 311
Target Start/End: Complemental strand, 6259758 - 6259599
Alignment:
Q  152 atcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatca 251  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6259758 atcatttgtttttgtcttgtgtaacttttggtgctttatggccattggtgcgagcatggctaggagtggtaggggtcgattctcaatcaacttcagatca 6259659  T
Q  252 tcttttgcaatttattaattacgcaggttgtttgggagggagacggtcttttttccattt 311  Q
    | ||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||    
T  6259658 ttttttgcaatttattaattacgtaggttgttcgagagggagacggtcttttttccattt 6259599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 11909153 - 11909460
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||||||| |||||||| |||||||| ||||  || | ||  |||||||||||||| ||||||||||||||||||||||| ||     
T  11909153 tggcataaacaggttcctctcaaagtatctatcattgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctat 11909252  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| ||| |||| | ||||||||||| ||||||| ||| |||||||||  |||||||||||||||||||| |||||||||||| ||||||||  ||||    
T  11909253 ctgtggaggagcggctatgtgtttctggatgtgggattgtcgaagatgtttctcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggt 11909352  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtct 300  Q
    ||  |  ||| |||| |||||||| ||||| |||| |||||||||| ||||| ||  |||||||||| |||| |||||||||||| ||||| ||||||||    
T  11909353 gcaggattggttaggcgtggtaggtgtcgactctcgatcaacttcagatcattttgagcaatttatttattatgcaggttgtttgagagggtgacggtct 11909452  T
Q  301 tttttcca 308  Q
    || |||||    
T  11909453 ttcttcca 11909460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 6050695 - 6050387
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||| ||||||||| | ||||||||||||||| ||||| || | ||  |||||||||||||| |||||||||||||| |||||||| ||     
T  6050695 tggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaattgtggcattctat 6050596  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| ||| |||||| || ||| |||| ||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||| ||||||||  ||||    
T  6050595 ctgtggaggagcggttctgcgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggt 6050496  T
Q  201 gcgagca-tggctaggagtggtaggggtcgattctcaatcaacttc-atatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggt 298  Q
    ||| ||| ||| ||||||||||||| ||||| |||||||||||||| | ||||  || ||||||||||| |||| |||||||||| | ||||| ||||||    
T  6050495 gcg-gcattggttaggagtggtaggtgtcgactctcaatcaacttcaagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggt 6050397  T
Q  299 cttttttcca 308  Q
    |||| |||||    
T  6050396 ctttcttcca 6050387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 35541141 - 35540834
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||| || | ||  ||||||| ||||||  |||||||||||||||||||||| ||     
T  35541141 tggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagggatcggttacccacaaaacataatttggcaaatcgtggcattctat 35541042  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| |||  || || || ||| |||| ||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||| ||||||||  ||||    
T  35541041 ctgtggaggaacgattatgcgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggt 35540942  T
Q  201 gcgagca-tggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtc 299  Q
    ||| ||| ||| ||||||||||||| ||||| ||||||||||||||| ||||  || ||||||||||| |||| |||||||||| | ||||| |||||||    
T  35540941 gcg-gcattggttaggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtc 35540843  T
Q  300 ttttttcca 308  Q
    ||| |||||    
T  35540842 tttcttcca 35540834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 158 - 308
Target Start/End: Complemental strand, 4842339 - 4842189
Alignment:
Q  158 tgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatctttt 257  Q
    |||||||||||||||||||||||  ||| ||||||||  ||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||  |      
T  4842339 tgtttttgtcttgtgtaacttttaatgcattatggcctatggtgcgggcatggctaggagtggtaggggtcgaatctcaatcaacttcagatcattgtca 4842240  T
Q  258 gcaatttattaattacgcaggttgtttgggagggagacggtcttttttcca 308  Q
    |||||||||| ||||||||||||||||| || || |||||||||| |||||    
T  4842239 gcaatttattcattacgcaggttgtttgagaaggcgacggtctttcttcca 4842189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 26059755 - 26059676
Alignment:
Q  229 gattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtcttttttcca 308  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| | ||||| |||||||||| |||||    
T  26059755 gattctcaatcaacttcagatcattttttgcaatttattaattatgcaggttgttcgagagggtgacggtctttcttcca 26059676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 47623125 - 47623323
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||| ||||||||| ||||||| ||||||||| | || ||| | ||| | |||||||| ||    ||||||||||| |||| |||| | |    
T  47623125 tggcataaacaggtacctctcaaagtatctattcttgcttggcggcttttgagggaccgcttacctacgaagggaaatttggcaaaccgtgacattattc 47623224  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || ||| |||||  ||||||||||| |||||| ||| ||||||||| ||||| |||||| |||||||   |  |||||||||||||||| | |||||    
T  47623225 ctatggaggggcggt--tgtgtttctggttgtgggcatgatgaagatgtgaatcacttgtttctgtcttgcccattttttggtgccttatggtctttggt 47623322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 285
Target Start/End: Complemental strand, 43388321 - 43388175
Alignment:
Q  139 gttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctcaat 238  Q
    ||||||||||| |||||||| ||||||||||||  || ||||||||| || ||||| |||||||| || ||||| || || | |||||||||||||||      
T  43388321 gttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggggtcgattctcata 43388222  T
Q  239 caacttcatatcatcttttgcaatttattaattacgcaggttgtttg 285  Q
    | |  ||||||||  || ||||||||||| | || |||||| |||||    
T  43388221 ctatctcatatcactttgtgcaatttattgaatatgcaggtggtttg 43388175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 16917986 - 16918092
Alignment:
Q  130 tgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcg 229  Q
    |||||| | ||||||||||| |||||||| ||||||||||||   ||||||||||| || |||||  ||||||| || ||||| || || | ||||||||    
T  16917986 tgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcg 16918085  T
Q  230 attctca 236  Q
    |||||||    
T  16918086 attctca 16918092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 37191258 - 37191469
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||| ||||| | | ||| | | ||||||||||||| | || ||| ||||  | |||||||| |||   || |||||| |||||||||||  |     
T  37191258 tggcataaactggttcatttaaaagtttatatccttgcttggcggctgttgagagatcgattacctactaaatccaacttggcagatcgtggcattacat 37191357  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| |||  || || |||||  | || |||||| ||||||||||||| |||||| ||||||||||||||  || ||| ||||| ||||||||  ||||    
T  37191358 ctgtggaggatcgattttgtgtcacgggatgtgggcatgttgaagatgtgaatcatatgtttttgtcttgtccaattttcggtgcattatggcctatggt 37191457  T
Q  201 gcgagcatggct 212  Q
    ||| | ||||||    
T  37191458 gcgggaatggct 37191469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 13352173 - 13352124
Alignment:
Q  234 tcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtt 283  Q
    ||||||||||||| ||||| ||||| ||||||||||||| ||||||||||    
T  13352173 tcaatcaacttcagatcattttttgtaatttattaattatgcaggttgtt 13352124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 105891 - 106198
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||| ||||||||| | ||||||||||||||| ||||| || | ||  |||||||||||||| ||||||||||||||||||||||| ||     
T  105891 tggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctat 105990  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| ||| |||||| || ||| |||| ||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||| ||||||||  ||||    
T  105991 ctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggt 106090  T
Q  201 gcgagca-tggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtc 299  Q
    ||| ||| ||| ||||||||||||| ||||| ||||||||||||||| ||||  || ||||||||||| |||| |||||||||| | ||||| |||||||    
T  106091 gcg-gcattggttaggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtc 106189  T
Q  300 ttttttcca 308  Q
    ||| |||||    
T  106190 tttcttcca 106198  T

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Target: scaffold0369 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 11253 - 11560
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||  |  | ||  |||||||||||||| ||||||||||||| ||||||||| ||     
T  11253 tggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctcagggatcggttacctacaaaacttaatttggcaaaccgtggcattctat 11352  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| ||| |||||| ||||||||||| ||||||||||| ||| |||||  |||||||||||||||||||| ||||||||| || ||||||||  ||||    
T  11353 ctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaaaatgtttttcatttgtttttgtcttgtgcaacttttggagcattatggccgatggt 11452  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtct 300  Q
    ||| |  ||| ||||||||||||||||||| ||||||||||||||| ||||| ||  ||||||||||||||| || ||||||| | ||||| | ||||||    
T  11453 gcgggattggttaggagtggtaggggtcgactctcaatcaacttcagatcattttgagcaatttattaattatgccggttgttcgagagggcggcggtct 11552  T
Q  301 tttttcca 308  Q
    || |||||    
T  11553 ttcttcca 11560  T

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Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 41207108 - 41206826
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||||||||||||| | ||||||||||||||| | ||  || | ||  ||||||||||||||| |||||||||||||||||||||| | |    
T  41207108 tggcataaacaggttcctctcaaagtctctatccttgcttggcggcttctgagggatcggttacctacaaaaaataatttggcaaatcgtggcattattc 41207009  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    |  || ||||||||||||||||  |||| || ||| | ||||||||||| ||||||||||| |||||||||  ||||||||||||||||||||||||| |    
T  41207008 ccttggaggcgcggttgtgtgtcactggatgcgggcacgttgaagatgtcaatcatttgttcttgtcttgtccaacttttggtgccttatggccattgat 41206909  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtt 283  Q
    ||| |||||||| |||||||||||||| || |||||  |||||||| ||||| |||||||||||||||| |||||| ||||||    
T  41206908 gcgggcatggctcggagtggtaggggttgactctcagacaacttcagatcattttttgcaatttattaactacgcaagttgtt 41206826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 4552261 - 4551954
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    ||||||||| |||||||||| ||| ||||||||||||||||| ||||  || | ||  |||||||||||||| ||||||||||||||||||||||| ||     
T  4552261 tggcataaataggttcctcttaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctat 4552162  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    ||||| ||| |||||| ||||||||||| ||||||| ||| ||| |||||  |||||||||||||||||||| |||||||||||| ||||| ||  ||||    
T  4552161 ctgtggaggagcggttatgtgtttctggatgtgggattgtcgaaaatgtttctcatttgtttttgtcttgtgcaacttttggtgcattatgaccgatggt 4552062  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggttgtttgggagggagacggtct 300  Q
    ||| |  ||| |||| |||||||| ||||| |||| |||||||||| ||||| ||  ||||||||||||||| |||||||||| | ||||| ||||||||    
T  4552061 gcgggattggttaggcgtggtaggtgtcgactctcgatcaacttcagatcattttgagcaatttattaattatgcaggttgttcgagagggcgacggtct 4551962  T
Q  301 tttttcca 308  Q
    || |||||    
T  4551961 ttcttcca 4551954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 3 - 279
Target Start/End: Complemental strand, 15917744 - 15917468
Alignment:
Q  3 gcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttacct 102  Q
    ||||||| |||||||||| ||| | | ||||||||||||| ||||  || | ||  | |||||||||||| ||||||||||||||||||| ||| | |||    
T  15917744 gcataaataggttcctctgaaagtctgtatccttgcttggggactgctgagggatcgtttacctacaaaagttaatttggcaaatcgtggtattattcct 15917645  T
Q  103 gtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgc 202  Q
     || | | ||||||||||||  |||| |||||| ||||||||||||| |||||| ||||||||||||||  ||||||||| || || |||||||||||||    
T  15917644 ttggaagtgcggttgtgtgtcactggttgtgggcatgttgaagatgtgaatcatatgtttttgtcttgtccaacttttggcgcgttgtggccattggtgc 15917545  T
Q  203 gagcatggctaggagtggtaggggtcgattctcaatcaacttcatatcatcttttgcaatttattaattacgcaggt 279  Q
      ||||||||  | || |||||||||| ||||||  | | |||| | ||| |||||||||||||| |||| ||||||    
T  15917544 aggcatggctcagtgttgtaggggtcggttctcaggctatttcagaccattttttgcaatttattcattatgcaggt 15917468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 12645628 - 12645394
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    ||||||||||||||| |||| ||| | || |||||||||||| | |||||| | ||  | ||||||||||||   |||||| || ||||  | ||| |||    
T  12645628 tggcataaacaggtttctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaatttgacagatcgcagaattctac 12645529  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || |||| ||||| |||||| | ||||||||| ||||||||||||| | ||||||||||||||||||   || |||||| || || |||||  ||||    
T  12645528 ctttggaggctcggttttgtgttacagggtgtgggcatgttgaagatgtgactcatttgtttttgtcttgcccaatttttggcgcattgtggcctatggt 12645429  T
Q  201 gcgagcatggctaggagtggtaggggtcgattctc 235  Q
    ||| || ||||| || || | |||||| |||||||    
T  12645428 gcgggcttggcttggtgtcgaaggggtagattctc 12645394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 28252812 - 28252610
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    |||||||||||||| ||||| ||| ||||||| ||||||||| | || ||| | ||  | |||||||| ||    ||||||||||| | ||||||| | |    
T  28252812 tggcataaacaggtacctctaaaagtatctattcttgcttggcggcttttgagggatcgcttacctacgaagggaaatttggcaaaccatggcattattc 28252713  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
     | || ||| |||||| |||||||| || |||||  ||| ||||||||| |||||||||||||||||||||  |  |||||||||||||||| | |||||    
T  28252712 atatggaggggcggttatgtgtttccggttgtggtcatgatgaagatgtgaatcatttgtttttgtcttgtccattttttggtgccttatggtctttggt 28252613  T
Q  201 gcg 203  Q
    |||    
T  28252612 gcg 28252610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 17765010 - 17765210
Alignment:
Q  1 tggcataaacaggttcctctcaaaatatctatccttgcttggagactattgcgagacaggttacctacaaaaattaatttggcaaatcgtggcattttac 100  Q
    ||||||||||||| |||||| ||| | ||||| ||||||||| | |||||| | ||    |||||||| |||   ||||||||||| ||||| ||  | |    
T  17765010 tggcataaacaggctcctcttaaagtctctattcttgcttggcggctattgagggatcatttacctacgaaagcaaatttggcaaaccgtggtatcattc 17765109  T
Q  101 ctgtgaaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggt 200  Q
    || || ||||||||||||||||  |||| |||||  | || |||||||| ||||| ||||||||||||||   || |||||||||||||||| |||||||    
T  17765110 ctttggaggcgcggttgtgtgtcactggttgtggtcacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttggtgccttatggtcattggt 17765209  T
Q  201 g 201  Q
    |    
T  17765210 g 17765210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 11000127 - 11000233
Alignment:
Q  130 tgtgggaatgttgaagatgttaatcatttgtttttgtcttgtgtaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcg 229  Q
    |||||| ||||||||||||| ||||||||||| || ||||||  || ||||||||| || |||||  ||||||| |||||||| || || | |||||| |    
T  11000127 tgtgggcatgttgaagatgtgaatcatttgttcttatcttgtccaatttttggtgcattgtggcctatggtgcgggcatggcttggtgtcgaaggggtag 11000226  T
Q  230 attctca 236  Q
    |||||||    
T  11000227 attctca 11000233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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