View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6691_high_3 (Length: 274)
Name: NF6691_high_3
Description: NF6691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6691_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 34 - 260
Target Start/End: Complemental strand, 29838664 - 29838438
Alignment:
| Q |
34 |
tattaactacttttcagtttaatttgcctattgcgacaaattagcaattactagtcattaaatgtacatgcacgcatgcacgatcacagaagcacacaga |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29838664 |
tattaactacttttcagtttaatttgcctattgcgacaaattagcaattactagtcattaaatgtacatgcacgcatgcacgatcacagaagcacacaga |
29838565 |
T |
|
| Q |
134 |
agaaacaagatcatttgataatgtcaagttattacgcggttgtcaccatttatacacgatttgcaagcatttaccaatcattttgtagtattacttggta |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29838564 |
agaaacaagatcatttgataatgtcaagttattacgcggttgtcaccatttatacgcgatttgcaagcatttaccaatctttttgtagtattacttggta |
29838465 |
T |
|
| Q |
234 |
cataccatctgatactctctgctgatg |
260 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
29838464 |
cataccatctgatactctctgctgatg |
29838438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University