View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6691_high_4 (Length: 245)
Name: NF6691_high_4
Description: NF6691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6691_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 39226100 - 39226341
Alignment:
| Q |
1 |
ctcttttcccatgcaacacttcacctaaactaccatttgtcatgtactcataaacaagcaaattagtgtctctatttgaacaaaatgctaacaacttcac |
100 |
Q |
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| T |
39226100 |
ctcttttcccatgcaacacttcacctaaactaccatttgtcatgtactcataaacaagcaaattagtgtctctatttgaacaaaatgctaacaacttcac |
39226199 |
T |
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| Q |
101 |
aatgtatctgtgccttattctaccaagtgtttttatttcagctgataaaccgttatcataagaacaacctttgttaattcctaataactttttcacagct |
200 |
Q |
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| T |
39226200 |
aatgtatctgtgccttattctaccaagtgtttttatttcagctgataaaccattatcataagaacaacctttgttaattcctaataactttttcacagct |
39226299 |
T |
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| Q |
201 |
actttttctccatttggcattgttcctccatatacaacacca |
242 |
Q |
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| T |
39226300 |
actttttctccatttggcattgttcctccatatacaacacca |
39226341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 16735125 - 16734890
Alignment:
| Q |
1 |
ctcttttcccatgcaacacttcacctaaactaccatttgtcatgtactcataaacaagcaaattagtgtctctatttgaacaaaatgctaacaacttcac |
100 |
Q |
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| T |
16735125 |
ctctttttccatgcaaaacttcaccaaggctaccattttccatgtaatcataaacaagcaaatttgtttctttgtttgtacaaaatgcaaccaacctaac |
16735026 |
T |
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| Q |
101 |
aatgtatctgtgccttattctaccaagtgtttttatttcagctgataaaccgttat---cataagaacaa------cctttgttaattcctaataacttt |
191 |
Q |
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| T |
16735025 |
aatatacctgtgtctgattctacctaatgtcttaatttctgctgaaaagccgttatcggcatgagaagaagaatttcctttgttgattcctaacaatttc |
16734926 |
T |
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| Q |
192 |
ttcacagctactttttctccatttggcattgttcct |
227 |
Q |
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| T |
16734925 |
ttcacagcaatttcatctccatttggcattgttcct |
16734890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 36941918 - 36941954
Alignment:
| Q |
25 |
ctaaactaccatttgtcatgtactcataaacaagcaa |
61 |
Q |
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||||||||||||||| |||||||||||| |||||||| |
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| T |
36941918 |
ctaaactaccatttggcatgtactcatacacaagcaa |
36941954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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