View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6691_low_1 (Length: 365)
Name: NF6691_low_1
Description: NF6691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6691_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 23 - 348
Target Start/End: Original strand, 4815271 - 4815596
Alignment:
| Q |
23 |
ggatgaattgagaatcaaggtagatgattttctgctgaaaatgaattaggaaactagaagagagaaagtgaaagctaacaaggatgattttagagcatgg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4815271 |
ggatgaattgagaatcaaggtagatgattttctgctgaaaatgaattaggaaactagaagagagaaagtgaaagctaacaaggatgattttagagcatgg |
4815370 |
T |
|
| Q |
123 |
ttctctgaact--gctcaagaatatagagttaattgaccggagaaggaattcacacagtgtcatcttccagctctttctgaagacatgctagaaccctac |
220 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4815371 |
ttctctgaactctgctcaagaatatagagttaattgaccggagaaggaatttaca--gtgtcatcttccagctctttctgaagacatgctagaaccctac |
4815468 |
T |
|
| Q |
221 |
atcttctctatattagtgtctaacactccattctttcatctgaagctagatctctttgaacttcatatcgttctatctgatcctatactacaagactttg |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4815469 |
atcttctctatattagtgtctaacactccattctttcatctgaagctagatctctttgaacttcatatcgttctatctgatcctatactacaagactttg |
4815568 |
T |
|
| Q |
321 |
tgtatgttgttgaatttcataagttcct |
348 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
4815569 |
tgtatgttgttgaatttcataagttcct |
4815596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University