View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6691_low_2 (Length: 319)
Name: NF6691_low_2
Description: NF6691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6691_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 410393 - 410133
Alignment:
| Q |
1 |
agttggagtgtgaggcatgtgaagtgagatgaaatcagcggttgtgattgcttgatcaaatgagactaattccacaccaacagcacgtgctctatcagct |
100 |
Q |
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| T |
410393 |
agttggagtgagaggcatgtgaagtgagatgaaatcagcggttgtgattgcttgatcaaatgaaactaattccacaccaacagcacgtgctctatcagct |
410294 |
T |
|
| Q |
101 |
ggagcataagggtcatgagcaatcacattcattcctaatccttttgcacgccttgcaacttcagatccaacttttccaaatcccattattgctaatgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
410293 |
ggagcataagggtcatgagcaatcacattcattcctaatccttttgcacgccttgcaacttcagatccaacttttccaaaccccattattgctaatgttt |
410194 |
T |
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| Q |
201 |
tcccaaccatagatactcccacatacttgcttcttagccattttcctgcaaaaattatcaa |
261 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
410193 |
tcccaaccatagatactccaacatacttgcttctcagccattttcctgcaaaaattatcaa |
410133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 234
Target Start/End: Complemental strand, 48785548 - 48785408
Alignment:
| Q |
94 |
atcagctggagcataagggtcatgagcaatcacattcattcctaatccttttgcacgccttgcaacttcagatccaacttttccaaatcccattattgct |
193 |
Q |
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|||||| ||||||||||| ||||||||||| || ||||| || | || || |||||||| ||||| |||| |||||| || ||||||||||||| || |
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| T |
48785548 |
atcagcaggagcataaggatcatgagcaataaccttcataccaagccccttagcacgcctagcaacctcagttccaaccttcccaaatcccattacagca |
48785449 |
T |
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| Q |
194 |
aatgttttcccaaccatagatactcccacatacttgcttct |
234 |
Q |
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| T |
48785448 |
agtgtcttcccaactagggaaactccaacatacttacttct |
48785408 |
T |
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