View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6691_low_4 (Length: 306)
Name: NF6691_low_4
Description: NF6691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6691_low_4 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 11845593 - 11845451
Alignment:
| Q |
8 |
agtactattctagctatttcatgctttttactcctttcttgagttctagaattctaagatattcattgctattgagtcaaaataaaatgctactaaaagg |
107 |
Q |
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| T |
11845593 |
agtactattctagctatttcatgctttttactcctttcttgagttctagaattctaagatattcattgctattgagtcaaaataaaatgctactaaaagg |
11845494 |
T |
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| Q |
108 |
ccagaattgtagacttatacgtatgactaattgttgttataaa |
150 |
Q |
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| T |
11845493 |
ccagaattgtagacttatacgtatgactaattgttgttataaa |
11845451 |
T |
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Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 23924597 - 23924456
Alignment:
| Q |
1 |
atgtcctagtactattctagctatttcatgctttttactcctttcttgagttctagaattctaagatattcattgctattgagtcaaaataaaatgctac |
100 |
Q |
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| T |
23924597 |
atgtcctagtactattctagctatttcatgctttttactcctttcttgagttttagaattctaagatattcattgctattgagtcaaaataaaatgctac |
23924498 |
T |
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| Q |
101 |
taaaaggccagaattgtagacttatacgtatgactaattgtt |
142 |
Q |
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| T |
23924497 |
taaaaggccagaattgtagacttatacgtatgactaattgtt |
23924456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 192 - 300
Target Start/End: Complemental strand, 23924437 - 23924329
Alignment:
| Q |
192 |
aaactaaacacaaaatatatagttgtgtctttgaagcatattgaggatccaatccaggagcatgcaaaaggggttgatcagagtattggtgaggtaagtt |
291 |
Q |
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| T |
23924437 |
aaactaaacacaaaatatatagttgtgtctttgaagcatattgaggatccagtccaggagcatgcaaaaggggttgatcagagtattggtgaggtaagtt |
23924338 |
T |
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| Q |
292 |
gttcatctc |
300 |
Q |
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| T |
23924337 |
gttcatctc |
23924329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 10642224 - 10642298
Alignment:
| Q |
226 |
agcatattgaggatccaatccaggagcatgcaaaaggggttgatcagagtattggtgaggtaagttgttcatctc |
300 |
Q |
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| T |
10642224 |
agcatattgaggatccagtccaggagcatgcaaaaggggttgatcagagtatcggtgaggtaagttgttcatctc |
10642298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 300
Target Start/End: Original strand, 10642187 - 10642216
Alignment:
| Q |
271 |
agagtattggtgaggtaagttgttcatctc |
300 |
Q |
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| T |
10642187 |
agagtattggtgaggtaagttgttcatctc |
10642216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 300
Target Start/End: Complemental strand, 32713560 - 32713531
Alignment:
| Q |
271 |
agagtattggtgaggtaagttgttcatctc |
300 |
Q |
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| T |
32713560 |
agagtattggtgaggtaagttgttcatctc |
32713531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 279
Target Start/End: Original strand, 88860 - 88941
Alignment:
| Q |
198 |
aacacaaaatatatagttgtgtctttgaagcatattgaggatccaatccaggagcatgcaaaaggggttgatcagagtattg |
279 |
Q |
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| T |
88860 |
aacacagaagatatagctgtgtctttggatcatgttgaggatcccactgaggagcatgcaaaaggggttgataagagtattg |
88941 |
T |
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