View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6691_low_5 (Length: 297)

Name: NF6691_low_5
Description: NF6691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6691_low_5
NF6691_low_5
[»] chr1 (2 HSPs)
chr1 (158-289)||(38183846-38183977)
chr1 (14-106)||(38183640-38183731)
[»] chr4 (2 HSPs)
chr4 (158-283)||(49011200-49011323)
chr4 (62-105)||(49011122-49011165)


Alignment Details
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 158 - 289
Target Start/End: Original strand, 38183846 - 38183977
Alignment:
Q  158 agatgtatgcatctcaccatactgatttaacatctaaccatcatgaaagagaaagtgaggttataaagctacaagtacaatccttgttcaatgcccacaa 257  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38183846 agatgtatgcatctcaccatattgatttaacatctaactatcatgaaagagaaagtgaggttataaagctacaagtacaatccttgttcaatgcccacaa 38183945  T
Q  258 aagcatctaaccacagacagaagaaagaaaca 289  Q
    ||||||||||||||||||||||||||||||||    
T  38183946 aagcatctaaccacagacagaagaaagaaaca 38183977  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 38183640 - 38183731
Alignment:
Q  14 ccaagaatattcagttatacctaaatttatttttnnnnnnnttgtataaaaatattgaaattgatcttattcatatagttttttcaaaatccc 106  Q
    |||| ||||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38183640 ccaaaaatattcagttatacctaaatttatttt-aaaaaaattggataaaaatattgaaattgatcttattcatatagttttttcaaaatccc 38183731  T

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Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 158 - 283
Target Start/End: Original strand, 49011200 - 49011323
Alignment:
Q  158 agatgtatgcatctcaccatactgatttaacatctaaccatcatgaaagagaaagtgaggttataaagctacaagtacaatccttgttcaatgcccacaa 257  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||  |||||||||||||||||||| |||||||    
T  49011200 agatgtatgcatcttaccatactgatttaacatctaaccattatgaaagagaaagtgaggtgataaagct--aagtacaatccttgttcaattcccacaa 49011297  T
Q  258 aagcatctaaccacagacagaagaaa 283  Q
    ||||| ||||||||||||||||||||    
T  49011298 aagcagctaaccacagacagaagaaa 49011323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 49011122 - 49011165
Alignment:
Q  62 aaaatattgaaattgatcttattcatatagttttttcaaaatcc 105  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  49011122 aaaatattgaaattgatcttattcgtatagttttttcaaaatcc 49011165  T

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