View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6692_high_13 (Length: 244)
Name: NF6692_high_13
Description: NF6692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6692_high_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 19544690 - 19544921
Alignment:
| Q |
13 |
acatcatacttgatgtttgatgtcttttcctaatgagatctctaatccacaagaaaaattgtgaataaagtgcaggatagtaatatttctttaaatcact |
112 |
Q |
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| T |
19544690 |
acatcatacttgatgtttgatgtcttttcctaatgagatctctaatccacaagaaaaattgtgaataaagtgcaggatagtaatatttctttaaatcact |
19544789 |
T |
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| Q |
113 |
agcaccaataagaactgttgctttcctcatctgagaacatgtgtaatcaacaatttatttttccaaatctacatgataaagttataaaaatacatagtgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19544790 |
agcaccaataagaactgttgctttcctcatctgagaacatgtgtaatcaacaatttatttttccaaatctacatgataaagttataaaaatacatagtgt |
19544889 |
T |
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| Q |
213 |
agtatctatatatgttacatgagaaaaaatat |
244 |
Q |
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||||| |||||||||||||||||||||||||| |
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| T |
19544890 |
agtatttatatatgttacatgagaaaaaatat |
19544921 |
T |
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