View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6692_high_14 (Length: 244)
Name: NF6692_high_14
Description: NF6692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6692_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 53043840 - 53043619
Alignment:
| Q |
5 |
gttggtcttctggtaggttgattagatgaatcaggggctcacctctattatgactgtccaagcggaaactattttgaatatcaggcttttgcaatcggtt |
104 |
Q |
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| T |
53043840 |
gttggtcttctggtaggtggattagatgaatcaggggctcacctctattacaactgtccaagcggaaactattttgaatatcaggcttttgcaatcggtt |
53043741 |
T |
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| Q |
105 |
cgcgttcacaagctgcaatgacatatttggaacgcaagtttaacaacttcacagcctcatcccgggaagatctgatcaaagatgcactcattgcaactag |
204 |
Q |
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| T |
53043740 |
cgcgttcacaagctgcaatgacatatttggaatgcaagtttaacaacttcacagcctcatcgcgggaagatctgatcaaagatgcactcattgcaactag |
53043641 |
T |
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| Q |
205 |
ggaatccttgcaaggtgaaaag |
226 |
Q |
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||||||||||||||| |||||| |
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| T |
53043640 |
ggaatccttgcaaggagaaaag |
53043619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 7130942 - 7130717
Alignment:
| Q |
1 |
tggtgttggtcttctggtaggttgattagatgaatcaggggctcacctctattatgactgtccaagcggaaactattttgaatatcaggcttttgcaatc |
100 |
Q |
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||||||||||||||| |||| | |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
7130942 |
tggtgttggtcttcttgtagctggattagatgaatcaggggctcacctctattataactgcccaagcggaaactattttgaatatcaggcatttgcaatc |
7130843 |
T |
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| Q |
101 |
ggttcgcgttcacaagctgcaatgacatatttggaacgcaagtttaacaacttcacagcctcatcccgggaagatctgatcaaagatgcactcattgcaa |
200 |
Q |
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| T |
7130842 |
ggttcacgctcacaagctgcaaagacatatttggaacgcaaatttaacaatttcacagcctcctcccgggaagatctgatcaaagatgcgctcattgcaa |
7130743 |
T |
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| Q |
201 |
ctagggaatccttgcaaggtgaaaag |
226 |
Q |
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| T |
7130742 |
ctagggagtccttgcaaggtgaaaag |
7130717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 3401671 - 3401889
Alignment:
| Q |
5 |
gttggtcttctggtaggttgattagatgaatcaggggctcacctctattatgactgtccaagcggaaactattttgaatatcaggcttttgcaatcggtt |
104 |
Q |
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||||||||||| |||| | ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||| | || |
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| T |
3401671 |
gttggtcttcttgtagctggattagatgaatcagaggctcacctctattacaactgcccaagcggaaactattttgaatatcaggcagttgcaattgatt |
3401770 |
T |
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| Q |
105 |
cgcgttcacaagctgcaatgacatatttggaacgcaagtttaacaacttcacagcctcatcccgggaagatctgatcaaagatgcactcattgcaactag |
204 |
Q |
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| T |
3401771 |
cacgctcacaagctgcaaagacatatttggaacgcaaatttaacaacttcacagcctcctcccgggaagatctgatcaaggatgcactcattgcaactag |
3401870 |
T |
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| Q |
205 |
ggaatccttgcaaggtgaa |
223 |
Q |
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||| ||||||||||||||| |
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| T |
3401871 |
ggagtccttgcaaggtgaa |
3401889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 41 - 226
Target Start/End: Original strand, 20865037 - 20865222
Alignment:
| Q |
41 |
gctcacctctattatgactgtccaagcggaaactattttgaatatcaggcttttgcaatcggttcgcgttcacaagctgcaatgacatatttggaacgca |
140 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||||||| || |||| | |||||| ||||||||||||||||| |
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| T |
20865037 |
gctcacctctattacaactgcccaagcggaaactattttgaacatcaggcatttgcaatcggttcacgctcactacctgcaaagacatatttggaacgca |
20865136 |
T |
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| Q |
141 |
agtttaacaacttcacagcctcatcccgggaagatctgatcaaagatgcactcattgcaactagggaatccttgcaaggtgaaaag |
226 |
Q |
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| T |
20865137 |
aagttaacaacttcgcagcctcctcccgaaaagatctgatcaagaatgcactcattgcaattagggagtccttgctaggtgaaaag |
20865222 |
T |
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