View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6692_high_17 (Length: 239)
Name: NF6692_high_17
Description: NF6692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6692_high_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 19545096 - 19545321
Alignment:
| Q |
1 |
caattggtcaggtaaaaaactacacagaccctttcacctaacacaacattaactaacaaagatagattagcaaaattatacagttcatgataacaactat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19545096 |
caattggtcaggtaaaaaactacacagaccctttcacctaacacaacattaactaacaaagatagattagcaaaattatacagttcatgataacaactat |
19545195 |
T |
|
| Q |
101 |
tattttgcaggtagcaattgaagtaatttatgttgcaatccaaagtttaatctattccaatatcctttactggatgcttgggttcccaccgcaagttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19545196 |
tattttgcaggtagcaattgaagtaatttatgttgcaatccaaagtttaatctattccaatatcctttactggatgcttgggttcccaccgcaagttgaa |
19545295 |
T |
|
| Q |
201 |
aatttcttttggttctacttcttgat |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
19545296 |
aatttcttttggttctacttcttgat |
19545321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 43531171 - 43530965
Alignment:
| Q |
3 |
attggtcaggtaaaaaactacacagaccctttcacctaacacaacattaactaacaaagatagattagcaaaattatacagttcatgataacaacta--t |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||| |||||||||| ||||||||||| ||||||||||||| |||| || |||||||||||| | |
|
|
| T |
43531171 |
attggtcaggtaaaa--ctacaca-accctttcacctaaaacaacattaattaacaaagataaattagcaaaattacacagatc-tgataacaactacat |
43531076 |
T |
|
| Q |
101 |
tattttgcaggtagcaattgaagtaatttatgttgcaatccaaagtttaatctattccaatatcctttactggatgcttgggttcccaccgcaagttgaa |
200 |
Q |
| |
|
|||| ||||||| |||||||| ||||||||||| ||||||||||| |||| ||||| |||||||||||| |||| ||||||||| |||||||||| || |
|
|
| T |
43531075 |
tattatgcaggtggcaattgaggtaatttatgtaacaatccaaagtctaatatattctaatatcctttac-cgatgtttgggttccaaccgcaagttaaa |
43530977 |
T |
|
| Q |
201 |
aatttcttttgg |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
43530976 |
aatttcttttgg |
43530965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 106 - 188
Target Start/End: Original strand, 43530880 - 43530967
Alignment:
| Q |
106 |
tgcaggtagcaattgaagtaatttatgttgcaatccaaag-----tttaatctattccaatatcctttactggatgcttgggttccca |
188 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||| | |||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43530880 |
tgcaggtggcaattgaagtaatttatgtagcaatccaaagtagtctctaatatattccaatatcctttactggatgtttgggttccca |
43530967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University