View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6692_high_22 (Length: 221)
Name: NF6692_high_22
Description: NF6692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6692_high_22 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 16027725 - 16027496
Alignment:
| Q |
1 |
ttatgttggaagtttcttaaatatg--------tgagata-tttccttagattaagggtgactaaaaattatggtttttataaaccacacaatatttatt |
91 |
Q |
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| T |
16027725 |
ttatgttggaagtttcttaaatatgataatgaatgagatagtttccttagattaagggtgactaaaaataatggtttttataaaccacacaatatttatt |
16027626 |
T |
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| Q |
92 |
cttctatttgtgaggtatcaaatgtaaaatcttagttgttcacgacaactctagatgacatttgggtgatggaaagactatcaatttcttgttagataat |
191 |
Q |
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| T |
16027625 |
cttctatttgtgaggtatcaaatgtaaaatcttagttgttcacgacagctctagatgacagttgggtgatggaaagactatcaaattcttgtttgataat |
16027526 |
T |
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| Q |
192 |
tggcattgtgaacctttagttgatgtccat |
221 |
Q |
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| T |
16027525 |
tggcattgtgaacctttagttgatgaccat |
16027496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 14608182 - 14608137
Alignment:
| Q |
176 |
tttcttgttagataattggcattgtgaacctttagttgatgtccat |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14608182 |
tttcttgttagataattggcattgtgaacctttagttgatgaccat |
14608137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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