View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6692_low_10 (Length: 451)
Name: NF6692_low_10
Description: NF6692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6692_low_10 |
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| [»] scaffold0008 (8 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 391; Significance: 0; HSPs: 8)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Complemental strand, 70342 - 69913
Alignment:
| Q |
8 |
tggacatcaccctcccacaatatgccaatacttttgttaaaataaggatggttacccatctagtcctgggaactttaaagggtgcatctggaaaattact |
107 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
70342 |
tggacatcacc-tcctacaatatgccaatacttttgttaaaatacggatggttacccatctagtcctgggaactttaaagggtgcatctggaaaattact |
70244 |
T |
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| Q |
108 |
tattctaatgattggttattgaaacaatccccacacaccttcctgtgattttcattaaagttccctttcactacctcacacacatcttcaattgcacttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
70243 |
tattctaatgattggttattgaaacaatccccacacaccttcctgtgattttcattaaagttccctttcactacctcacacacatcttcaattgcacttg |
70144 |
T |
|
| Q |
208 |
gtttagaggaagcatgcatttctgtgaaataacttgtgagaatatgctcaaccatccccttttctccacatactctttgtatctacaaatcaatcttcca |
307 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
70143 |
gtctagaggaaacatgcatttctgtgaaataacttgtgagaatatgctcaaccatccccttttctccacatactctttgtatctttaaatcaatcttcca |
70044 |
T |
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| Q |
308 |
tttacaaaggcgtttttctcttcatatatgatgttaggaaggatttgttttaacctatttgcaattgtttttgtcacaattttcatcactacgttacaaa |
407 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
70043 |
tttacaaaggcgttttgctcttcatatatgatgttaggaaggatttgttttaacctatttgcaattgtttttgtcacaattttcatcactacgttacaaa |
69944 |
T |
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| Q |
408 |
gactaataggtctgaaatccatggttgatgt |
438 |
Q |
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| T |
69943 |
ggctaataggtctgaaatccatggttgatgt |
69913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Complemental strand, 78185 - 77756
Alignment:
| Q |
8 |
tggacatcaccctcccacaatatgccaatacttttgttaaaataaggatggttacccatctagtcctgggaactttaaagggtgcatctggaaaattact |
107 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
78185 |
tggacatcacc-tcctacaatatgccaatacttttgttaaaatacggatggttacccatctagtcctgggaactttaaagggtgcatctggaaaattact |
78087 |
T |
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| Q |
108 |
tattctaatgattggttattgaaacaatccccacacaccttcctgtgattttcattaaagttccctttcactacctcacacacatcttcaattgcacttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
78086 |
tattctaatgattggttattgaaacaatccccacacaccttcctgtgattttcattaaagttccctttcactacctcacacacatcttcaattgcacttg |
77987 |
T |
|
| Q |
208 |
gtttagaggaagcatgcatttctgtgaaataacttgtgagaatatgctcaaccatccccttttctccacatactctttgtatctacaaatcaatcttcca |
307 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
77986 |
gtctagaggaaacatgcatttctgtgaaataacttgtgagaatatgctcaaccatccccttttctccacatactctttgtatctttaaatcaatcttcca |
77887 |
T |
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| Q |
308 |
tttacaaaggcgtttttctcttcatatatgatgttaggaaggatttgttttaacctatttgcaattgtttttgtcacaattttcatcactacgttacaaa |
407 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77886 |
tttacaaaggcgttttgctcttcatatatgatgttaggaaggatttgttttaacctatttgcaattgtttttgtcacaattttcatcactacgttacaaa |
77787 |
T |
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| Q |
408 |
gactaataggtctgaaatccatggttgatgt |
438 |
Q |
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| ||||||||||||||||||||||||||||| |
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| T |
77786 |
ggctaataggtctgaaatccatggttgatgt |
77756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 372 - 425
Target Start/End: Complemental strand, 70500 - 70447
Alignment:
| Q |
372 |
ttgtttttgtcacaattttcatcactacgttacaaagactaataggtctgaaat |
425 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
70500 |
ttgtttttgtcacaattatcatcactacgttacaaagactaatatgtctgaaat |
70447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 372 - 425
Target Start/End: Complemental strand, 78343 - 78290
Alignment:
| Q |
372 |
ttgtttttgtcacaattttcatcactacgttacaaagactaataggtctgaaat |
425 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
78343 |
ttgtttttgtcacaattatcatcactacgttacaaagactaatatgtctgaaat |
78290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 69821 - 69698
Alignment:
| Q |
8 |
tggacatcaccctcccacaatatgccaatacttttgttaaaataaggatggttacccatctagtcctgggaactttaaagggtgcatctggaaaattact |
107 |
Q |
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||||||||||| ||| |||| ||||||||||||||| |||||||||| | || |||||||| |||||| | |||||||| ||||||| || |||||||| |
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| T |
69821 |
tggacatcacc-tcctacaaaatgccaatacttttggtaaaataaggctagtaacccatctggtcctgaggactttaaatggtgcatttgaaaaattacg |
69723 |
T |
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| Q |
108 |
tattctaatgattggttattgaaac |
132 |
Q |
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| ||||| | ||||||| |||||| |
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| T |
69722 |
tcttctacttcttggttagtgaaac |
69698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 77664 - 77541
Alignment:
| Q |
8 |
tggacatcaccctcccacaatatgccaatacttttgttaaaataaggatggttacccatctagtcctgggaactttaaagggtgcatctggaaaattact |
107 |
Q |
| |
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||||||||||| ||| |||| ||||||||||||||| |||||||||| | || |||||||| |||||| | |||||||| ||||||| || |||||||| |
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| T |
77664 |
tggacatcacc-tcctacaaaatgccaatacttttggtaaaataaggctagtaacccatctggtcctgaggactttaaatggtgcatttgaaaaattacg |
77566 |
T |
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| Q |
108 |
tattctaatgattggttattgaaac |
132 |
Q |
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| ||||| | ||||||| |||||| |
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| T |
77565 |
tcttctacttcttggttagtgaaac |
77541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 69695 - 69654
Alignment:
| Q |
168 |
ttccctttcactacctcacacacatcttcaattgcacttggt |
209 |
Q |
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||||||||||||||||||||||||| || ||||||||||||| |
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| T |
69695 |
ttccctttcactacctcacacacatgtttaattgcacttggt |
69654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 77538 - 77497
Alignment:
| Q |
168 |
ttccctttcactacctcacacacatcttcaattgcacttggt |
209 |
Q |
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||||||||||||||||||||||||| || ||||||||||||| |
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| T |
77538 |
ttccctttcactacctcacacacatgtttaattgcacttggt |
77497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 423
Target Start/End: Complemental strand, 29943305 - 29943235
Alignment:
| Q |
353 |
tgttttaacctatttgcaattgtttttgtcacaattttcatcactacgttacaaagactaataggtctgaa |
423 |
Q |
| |
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||||| |||||||||||||| | ||| |||||||| |||||||| |||||||| ||||| || |||||||| |
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| T |
29943305 |
tgtttcaacctatttgcaatagctttggtcacaatcttcatcaccacgttacagagacttattggtctgaa |
29943235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 8710960 - 8711024
Alignment:
| Q |
359 |
aacctatttgcaattgtttttgtcacaattttcatcactacgttacaaagactaataggtctgaa |
423 |
Q |
| |
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|||||||||||||| ||||| || || ||||||||||| || |||||||| ||||| || ||||| |
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| T |
8710960 |
aacctatttgcaatggttttggttacgattttcatcaccacattacaaaggctaattggcctgaa |
8711024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 423
Target Start/End: Original strand, 20925919 - 20925983
Alignment:
| Q |
359 |
aacctatttgcaattgtttttgtcacaattttcatcactacgttacaaagactaataggtctgaa |
423 |
Q |
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|||||||||||||| ||||| || || ||||||||||| || |||||||| ||||| || ||||| |
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| T |
20925919 |
aacctatttgcaatggttttggttacgattttcatcaccacattacaaaggctaattggcctgaa |
20925983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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