View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6692_low_13 (Length: 418)
Name: NF6692_low_13
Description: NF6692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6692_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 33033383 - 33033791
Alignment:
| Q |
1 |
aactcctatatcttctcttgcaaggatgttagtacacctttactatcatagctcaaacaacttgtatgatgctgaggttaagtttgattgaaccagaaat |
100 |
Q |
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| T |
33033383 |
aactcctatatcttctcttgcaaggatgttggtacacctttactatcatagctcaaacaacttgtatgatgctgaggttaagtttgattgaaccagaaat |
33033482 |
T |
|
| Q |
101 |
caatcatgttatggaggagccagaacaacaatttcattgcgattagatgggaaaaaatgcgagagaaatttattgcactgagttttgatggggcggtggc |
200 |
Q |
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| T |
33033483 |
caatcatgttatggaggagccagaacaacaatttcattgcgattagatgggaaaaaatgcgagagaaatttattgca--gagttttgatggggcggtggt |
33033580 |
T |
|
| Q |
201 |
aggagagtcaagaccagcaggttgtggaggagctatacgaaactataatggtggtttccctgctgcattctcagctaaagggatacagtgaacataatct |
300 |
Q |
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| T |
33033581 |
aggagagtcaagaccagcaggttgtggaggagctatacgaaactataatggtggtttccctgctgcattctcagctaaagggatacagtgaacataatct |
33033680 |
T |
|
| Q |
301 |
gcaaacattatgtttcttattttattgatagttttgtattataggtgatgaacttaggctccagtctccctagaaaccaatcatattcaagtaaggtcgt |
400 |
Q |
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| T |
33033681 |
gcaaacattatgtttcttattttattgatagttttgtattataggtgatgaacttaggctccagtctccctagaaaccaatcatattcaagtaaggtcgt |
33033780 |
T |
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| Q |
401 |
atctgatgtcc |
411 |
Q |
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| T |
33033781 |
atccgatgtcc |
33033791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 397
Target Start/End: Original strand, 33033211 - 33033312
Alignment:
| Q |
296 |
aatctgcaaacattatgtttcttattttattgatagttttgtattataggtgatgaacttaggctccagtctccctagaaaccaatcatattcaagtaag |
395 |
Q |
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|||||||||||||||||| | |||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| ||| | |||||| ||| |
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| T |
33033211 |
aatctgcaaacattatgtaacctattttgttgatagttttgtactataggtgatgaacttaggttcctgtctccctagaaaccgatcctgttcaagcaag |
33033310 |
T |
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| Q |
396 |
gt |
397 |
Q |
| |
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|| |
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| T |
33033311 |
gt |
33033312 |
T |
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