View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6692_low_14 (Length: 403)
Name: NF6692_low_14
Description: NF6692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6692_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 67 - 385
Target Start/End: Original strand, 7894739 - 7895055
Alignment:
| Q |
67 |
tgactcggtgtcgtgttgaacactagacacgtctttcatcagaagtgtcggtgctacaaaggttatttgtttttctctttatatctgtcattttggttgt |
166 |
Q |
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| T |
7894739 |
tgactcggtgtcgtgttgaacactagacacgtctttcatcagaagtgtcggtgctacaaaggctatttgtttttctctttatatctgtcattttggttgt |
7894838 |
T |
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| Q |
167 |
tcttgttgttgcaatatcaatgttattgttatctgtgtagcacatacacttttgattgatttcgagtctaatgtatgacatgtgtccaccactgatatga |
266 |
Q |
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| T |
7894839 |
tcttgttgctgcaatatcaatgttattgttatctgtgtagcacatacacttttgattgaaggtgagtctaatgtatgacatgtgtcccccaccgatatga |
7894938 |
T |
|
| Q |
267 |
caattacacatgattacatannnnnnnnnnnnnngtagtagatagatgtgattacattgaattgtgttactttttcaaattatcggtgtcgacgcgtcaa |
366 |
Q |
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| T |
7894939 |
caatgactcgtgattacata-tttttttatttttgtagt-gatagatgtgattacattgaattgtgttactttttcaaattatcggtgtcgacgcgtcaa |
7895036 |
T |
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| Q |
367 |
tgtccatgtcgtgtatggt |
385 |
Q |
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| T |
7895037 |
tgtccatgttgtgtatggt |
7895055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 4785030 - 4785086
Alignment:
| Q |
71 |
tcggtgtcgtgttgaacactagacacgtctttcatcagaagtgtcggtgctacaaag |
127 |
Q |
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| T |
4785030 |
tcggtatcatgttggacaccagacacgtcttcgatcagaagtgtcggtgctacaaag |
4785086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 4012786 - 4012829
Alignment:
| Q |
79 |
gtgttgaacactagacacgtctttcatcagaagtgtcggtgcta |
122 |
Q |
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| T |
4012786 |
gtgttggacaccagacacgtctttcatcggaagtgtcggtgcta |
4012829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 35070047 - 35069998
Alignment:
| Q |
80 |
tgttgaacactagacacgtctttcatcagaagtgtcggtgctacaaaggt |
129 |
Q |
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| T |
35070047 |
tgttgaacactagacacaccttcaatcagaagtgtcggtgctacataggt |
35069998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 18888083 - 18888039
Alignment:
| Q |
89 |
ctagacacgtctttcatcagaagtgtcggtgctacaaaggttatt |
133 |
Q |
| |
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| T |
18888083 |
ctagacatgtctttgatctgaagtgtcgatgctacaaaggttatt |
18888039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 38461839 - 38461883
Alignment:
| Q |
78 |
cgtgttgaacactagacacgtctttcatcagaagtgtcggtgcta |
122 |
Q |
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| T |
38461839 |
cgtgttgaacactagacacatcttcgatcataagtgtcggtgcta |
38461883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 10250773 - 10250736
Alignment:
| Q |
312 |
atgtgattacattgaattgtgttactttttcaaattat |
349 |
Q |
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| T |
10250773 |
atgtgattacattgaattgtgttattttctcaaattat |
10250736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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