View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6692_low_15 (Length: 403)
Name: NF6692_low_15
Description: NF6692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6692_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 391
Target Start/End: Complemental strand, 5771901 - 5771526
Alignment:
| Q |
11 |
tggacatcacttacaataatatgaggtagcnnnnnnngtcttagattgtcgtaacatgtcaaaccttccaacaagctatagnnnnnnngagaatatacca |
110 |
Q |
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| T |
5771901 |
tggacatcacttacaataatatgaggtagctttgtt-gtcttagattgtcgtaacatgtcaaaccttccaacaagctatagaaaaaaagagaatatacca |
5771803 |
T |
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| Q |
111 |
atcaaaatagattttttagtatgcttatgcctcattggacaaaacaaaaacaaacataacctatgttttgagcgaggcataaaattcatgtatgacgaat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5771802 |
atcaaaatagattttttagtatgcttatgcctcattggacaaaacaaaaacaaacataacctatgttttgagcgaggcataaaattcatgtatgacgaat |
5771703 |
T |
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| Q |
211 |
catgtaagaaaaatgtattagaaactcaccacgacacactacacttacactaatttcagaacctacctagagcttcaaaatgttcagttattatttgagt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5771702 |
catgtaagaaaaatgtattagaaactcaccacgacacactacacttacactaatttcagaacctacctagagcttcaaaatgttcagt---tatttgagt |
5771606 |
T |
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| Q |
311 |
agcaaagctgtttggattaagaaaagggttagtacagaaaatgatttcacaagctcagataagccaatatccttaaatgat |
391 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5771605 |
agc-aagctgtttggattaagaaaagggttagtacagaaaatgatttcacaagctcagataagccaatatccttaaatgat |
5771526 |
T |
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