View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6692_low_2 (Length: 631)
Name: NF6692_low_2
Description: NF6692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6692_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 33 - 363
Target Start/End: Original strand, 31948968 - 31949289
Alignment:
| Q |
33 |
gataagtagtttaattgttagaaattcactttaaaattgaatatgtggagaatctagagttcgaacttcgactcttacgactcttacatatattaatatc |
132 |
Q |
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| T |
31948968 |
gataagtagtttaattgttagaaattcactttaaaattaaatatgtggagaattcagagtttgaacttcgacccttac---------atatattaatgtc |
31949058 |
T |
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| Q |
133 |
tctacttgagctaaactcacggtagaatgctttttagtttaattgttagattaattgaagnnnnnnncaagtttataccatgatatatgcaaagtaaact |
232 |
Q |
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| T |
31949059 |
tctacttgagctaaactcacggtagaatgctttttagtttaattgttagattatttgaagaaaaaaacaagtttataccatgatatatgcaaagtaaact |
31949158 |
T |
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| Q |
233 |
caaactaatgtcattaactagcatccctatcaacccaatctttcccaaactgacaactatacttcacccgatgtgaagtaataatcacttaatcaattgt |
332 |
Q |
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| T |
31949159 |
caaactaatgtcattaactagcatccctatcaacccaatcttacccaaactaacaactatatttcacccgatgtgaagtaataatcacctaatcaattgt |
31949258 |
T |
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| Q |
333 |
agtattgtgcgtaataaacagtaaaaaaacc |
363 |
Q |
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| T |
31949259 |
agtattgtgcgtaataaacagtaaaaaaacc |
31949289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 420 - 612
Target Start/End: Original strand, 31949348 - 31949540
Alignment:
| Q |
420 |
tctgctaatcccgtgtgttttgatttagacattgagcattgagaaaccgttcattcatttacagttgttacatattgatccttctctccgtatagatttt |
519 |
Q |
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| T |
31949348 |
tctgctaatcccgtgtgttttgatttagacattgagcattgagaaaccgttcattcatttacagttgttacatattgatccttctctccgtatagatttt |
31949447 |
T |
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| Q |
520 |
tccaaactttttaaaaacatattgcaagcgaacaatgccgtgcaacctctagatgaaaggctgtcatcgtttggaaacctattgtgaatgaac |
612 |
Q |
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| T |
31949448 |
tccaaactttttaaaaacatattgcaagcgaacaatgccgttcaacctctagacgaaaggctgtcatcgtttggaaacctattgtgaatgaac |
31949540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 509 - 612
Target Start/End: Complemental strand, 31953149 - 31953046
Alignment:
| Q |
509 |
gtatagatttttccaaactttttaaaaacatattgcaagcgaacaatgccgtgcaacctctagatgaaaggctgtcatcgtttggaaacctattgtgaat |
608 |
Q |
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| T |
31953149 |
gtatagatttttccaaactttttaaacacaacttgcaagcgaactcaaccgcgcagcctctaggccaaaggttgtcatcgtttggaaacctattgtgaat |
31953050 |
T |
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| Q |
609 |
gaac |
612 |
Q |
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|||| |
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| T |
31953049 |
gaac |
31953046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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