View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6692_low_28 (Length: 280)

Name: NF6692_low_28
Description: NF6692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6692_low_28
NF6692_low_28
[»] chr5 (3 HSPs)
chr5 (15-273)||(7817131-7817389)
chr5 (18-166)||(6641016-6641164)
chr5 (32-163)||(23945012-23945143)
[»] chr3 (10 HSPs)
chr3 (15-273)||(26432588-26432846)
chr3 (15-163)||(53608303-53608451)
chr3 (14-131)||(17718393-17718510)
chr3 (14-131)||(19019622-19019739)
chr3 (15-115)||(3659666-3659766)
chr3 (16-169)||(11897148-11897301)
chr3 (15-169)||(23424497-23424651)
chr3 (15-169)||(38647179-38647333)
chr3 (33-166)||(15473446-15473579)
chr3 (15-115)||(49149817-49149917)
[»] scaffold0036 (1 HSPs)
scaffold0036 (15-273)||(75904-76161)
[»] chr8 (3 HSPs)
chr8 (15-268)||(14759921-14760174)
chr8 (15-268)||(26973452-26973705)
chr8 (16-169)||(23132579-23132732)
[»] chr4 (4 HSPs)
chr4 (15-271)||(54477303-54477558)
chr4 (15-163)||(33803974-33804122)
chr4 (17-171)||(3881716-3881870)
chr4 (94-166)||(46784475-46784547)
[»] chr2 (8 HSPs)
chr2 (15-271)||(40328174-40328430)
chr2 (15-271)||(35135114-35135370)
chr2 (21-169)||(177501-177649)
chr2 (15-115)||(39012526-39012626)
chr2 (16-171)||(14653672-14653827)
chr2 (69-271)||(3778943-3779145)
chr2 (33-166)||(16322463-16322596)
chr2 (24-169)||(26791326-26791471)
[»] chr6 (3 HSPs)
chr6 (15-169)||(24893836-24893990)
chr6 (15-169)||(24990663-24990817)
chr6 (15-169)||(27852952-27853106)
[»] chr1 (2 HSPs)
chr1 (14-151)||(50236580-50236717)
chr1 (14-171)||(50451893-50452050)
[»] chr7 (1 HSPs)
chr7 (15-115)||(16770016-16770116)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 7817131 - 7817389
Alignment:
Q  15 gacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 114  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7817131 gacatcacaatcaagctcatcatgcattgtgtatcatcctccaactactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 7817230  T
Q  115 taagatagggtgatcctttatctccataccttttcattatttgcatggaaaagctatttgttgccattagtgccgccgtcaaccaaggaagataggatcc 214  Q
    | ||| ||||||| ||||||||||| |||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||| | |||| ||||||    
T  7817231 tcagacagggtgaccctttatctccttaccttttcattctttgcatggaaaagctatatgttgctattagtgccgccgtcaatcaaaggagatgggatcc 7817330  T
Q  215 gatccaaatcataaatacggggcctcagatatctcacttactttttgcagatgatgtcc 273  Q
    ||||||||||| ||||| |||||||| |||||||||  || |||||| |||||||||||    
T  7817331 gatccaaatcacaaatagggggcctcggatatctcatctattttttgtagatgatgtcc 7817389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 6641164 - 6641016
Alignment:
Q  18 atcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctaa 117  Q
    |||||||||||||| |||||| ||||||| || ||  ||| ||||||| | |||||||| || |||||| |  |  |||||||||| |||||||| ||      
T  6641164 atcacaatcaagcttatcatgtattgtgtctcctcagccacttactctctcttatggaacggaaacaaaatgtcccctttcaagcccactcatggcctcc 6641065  T
Q  118 gatagggtgatcctttatctccataccttttcattatttgcatggaaaa 166  Q
    || | ||||||||  | ||||| ||||| |||||||| |||||||||||    
T  6641064 gaaaaggtgatccgctctctccctacctcttcattatgtgcatggaaaa 6641016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 23945012 - 23945143
Alignment:
Q  32 catcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcct 131  Q
    ||||||||||||||| || || || |  ||||||||  | |||||||| |||||| ||||| ||||||||||| | || ||||| ||| |||||||||||    
T  23945012 catcatgcattgtgtttcctcatctacatactctatactgtggaatggaaacaaaattcctcctttcaagccttcacacggtctcagacagggtgatcct 23945111  T
Q  132 ttatctccataccttttcattatttgcatgga 163  Q
     |||| ||||| || || ||| |||| |||||    
T  23945112 ctatcaccatatctctttattctttgtatgga 23945143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 273
Target Start/End: Complemental strand, 26432846 - 26432588
Alignment:
Q  15 gacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 114  Q
    |||||||| ||||| ||||||||||||||||| ||||| || || ||||||||  | ||||||||||||||  | || |||||||| ||| |||||||||    
T  26432846 gacatcaccatcaaactcatcatgcattgtgtctcttcatcaaactactctatactttggaatgggaacaagttgccgtctttcaaaccttctcatggtc 26432747  T
Q  115 taagatagggtgatcctttatctccataccttttcattatttgcatggaaaagctatttgttgccattagtgccgccgtcaaccaaggaagataggatcc 214  Q
    |  || | |||||||| || || || || || ||||| |||||||||||||||||||  | ||| || |   ||||||||| ||||||||||| ||| ||    
T  26432746 tccgacaaggtgatccattgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacc 26432647  T
Q  215 gatccaaatcataaatacggggcctcagatatctcacttactttttgcagatgatgtcc 273  Q
    ||| |||||||    ||||||||| ||  |||| ||| | ||||||||| |||||||||    
T  26432646 gattcaaatcactcctacggggccgcatttatcccacctcctttttgcaaatgatgtcc 26432588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 163
Target Start/End: Complemental strand, 53608451 - 53608303
Alignment:
Q  15 gacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 114  Q
    |||||||| ||||||||||||||||||||||| || ||||| |  | ||||||| | |||||||| |||||| | |||||||||| |||| | |||||||    
T  53608451 gacatcaccatcaagctcatcatgcattgtgtttcctcctctaccttctctattctttggaatggaaacaaaatgccttctttcaggccttcacatggtc 53608352  T
Q  115 taagatagggtgatcctttatctccataccttttcattatttgcatgga 163  Q
    | ||| ||||||||||| |||| |||||||| || ||| |||| |||||    
T  53608351 tcagacagggtgatcctctatccccatacctctttattctttgtatgga 53608303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 17718510 - 17718393
Alignment:
Q  14 ggacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggt 113  Q
    |||| |||| ||||||||||||||||||||||| || || ||||  | ||||||||| |||||||| |||||| | ||| | ||||||||| ||||||||    
T  17718510 ggacgtcaccatcaagctcatcatgcattgtgtttcctcatccaccttctctattttgtggaatggaaacaaaatgcctcccttcaagccttctcatggt 17718411  T
Q  114 ctaagatagggtgatcct 131  Q
    ||  || |||||||||||    
T  17718410 ctctgacagggtgatcct 17718393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 19019739 - 19019622
Alignment:
Q  14 ggacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggt 113  Q
    |||| |||| ||||||||||||||||||||||| || || ||||  | ||||||||| |||||||| |||||| | ||| | ||||||||| ||||||||    
T  19019739 ggacgtcaccatcaagctcatcatgcattgtgtttcctcatccaccttctctattttgtggaatggaaacaaaatgcctcccttcaagccttctcatggt 19019640  T
Q  114 ctaagatagggtgatcct 131  Q
    ||  || |||||||||||    
T  19019639 ctctgacagggtgatcct 19019622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 3659766 - 3659666
Alignment:
Q  15 gacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 114  Q
    ||||| || ||||||||||||||||||||||| || |||||||  | |||| |||| |||||||| || || ||||||  ||| ||||||||||||||||    
T  3659766 gacattaccatcaagctcatcatgcattgtgtctcatcctccaccttctctgttttgtggaatggcaataagcttcctaattttaagcctactcatggtc 3659667  T
Q  115 t 115  Q
    |    
T  3659666 t 3659666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 11897148 - 11897301
Alignment:
Q  16 acatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtct 115  Q
    ||||||| |||||||||||||||||||| ||| ||||  | | |||||||||  | ||||| ||||||||  | ||  ||||||||||| ||||||| ||    
T  11897148 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 11897247  T
Q  116 aagatagggtgatcctttatctccataccttttcattatttgcatggaaaagct 169  Q
      || | |||||||| || || || || ||||||||  ||||||||||||||||    
T  11897248 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 11897301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 23424497 - 23424651
Alignment:
Q  15 gacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 114  Q
    |||||||| |||||||||||||| ||||||||  | |||||||  | ||| || |||||||| || |||||| | ||  |||||||||| || |||||||    
T  23424497 gacatcaccatcaagctcatcatacattgtgtcacctcctccacattctcaatattatggaaaggtaacaaaatgccccctttcaagcccacacatggtc 23424596  T
Q  115 taagatagggtgatcctttatctccataccttttcattatttgcatggaaaagct 169  Q
    | ||| | ||||| ||  | ||||| || ||||||||  | ||||||||||||||    
T  23424597 tcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagct 23424651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 38647333 - 38647179
Alignment:
Q  15 gacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 114  Q
    |||||||| ||||||||||||||||||||||| || || ||||  | ||||||| | ||||| || || ||| | ||  |||| |||||| | || ||||    
T  38647333 gacatcaccatcaagctcatcatgcattgtgtttcatcatccaccttctctattctttggaacggtaataaaatgcccccttttaagccttcccacggtc 38647234  T
Q  115 taagatagggtgatcctttatctccataccttttcattatttgcatggaaaagct 169  Q
    | ||| | ||||||||  | ||||| ||||| |||||| | ||||||||||||||    
T  38647233 tcagacaaggtgatccgctctctccctacctcttcattttatgcatggaaaagct 38647179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 166
Target Start/End: Complemental strand, 15473579 - 15473446
Alignment:
Q  33 atcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcctt 132  Q
    |||||||||||||| ||  |  ||||||||||| | ||||||||||| |||||| | ||| |||||||||| |||||||| ||  || | ||||| ||      
T  15473579 atcatgcattgtgtctccgcagccaattactctctcttatggaatggaaacaaaatgcctcctttcaagcccactcatggcctccgacaaggtgacccac 15473480  T
Q  133 tatctccataccttttcattatttgcatggaaaa 166  Q
    | ||||||||||  |||||  |||||||||||||    
T  15473479 tttctccataccaattcatactttgcatggaaaa 15473446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 49149917 - 49149817
Alignment:
Q  15 gacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 114  Q
    ||||| || ||||| || || ||||| ||||| ||||| |||| || |||| ||||||||||| | |||||| | ||   ||||||||||||||||||||    
T  49149917 gacattaccatcaaacttattatgcaatgtgtttcttcttccactttctctgttttatggaattgtaacaaattgccgcatttcaagcctactcatggtc 49149818  T
Q  115 t 115  Q
    |    
T  49149817 t 49149817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 75904 - 76161
Alignment:
Q  15 gacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 114  Q
    |||||||| |||||||||||  |||||||| | ||||| || |  ||||| |||||||||||| ||||||| || ||||| |||||||||||||||||||    
T  75904 gacatcactatcaagctcattttgcattgtatttcttcatctagctactcaattttatggaat-ggaacaagctgccttccttcaagcctactcatggtc 76002  T
Q  115 taagatagggtgatcctttatctccataccttttcattatttgcatggaaaagctatttgttgccattagtgccgccgtcaaccaaggaagataggatcc 214  Q
    | ||| | ||||| |  || || || || ||||||||  |||||||||||||||| | |||||| || | |  |||  |||||||||| | || |||       
T  76003 tcagacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagctctctgttgctatcaatctcgctatcaaccaagggacatgggaagt 76102  T
Q  215 gatccaaatcataaatacggggcctcagatatctcacttactttttgcagatgatgtcc 273  Q
    ||||||||||| ||||| |||||| ||| |||||||| |  | ||||||||||||||||    
T  76103 gatccaaatcacaaatagggggccccaggtatctcacctcttctttgcagatgatgtcc 76161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 268
Target Start/End: Original strand, 14759921 - 14760174
Alignment:
Q  15 gacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 114  Q
    ||||| ||||| | |||||||||||| ||||| ||||| ||||| ||||| || ||||||||||| |||||||| ||||  ||||| || || | ||| |    
T  14759921 gacataacaataaggctcatcatgcactgtgtttcttcatccaactactccatcttatggaatggaaacaaactcccttacttcaaacccacacgtggcc 14760020  T
Q  115 taagatagggtgatcctttatctccataccttttcattatttgcatggaaaagctatttgttgccattagtgccgccgtcaaccaaggaagataggatcc 214  Q
    |  |  | || ||||| || || |||||||| |||||| |||| ||||||||||| | | |||| || | | | || ||||| |||||||| | ||| ||    
T  14760021 ttcgccaaggagatccgttgtccccatacctcttcattctttgtatggaaaagctctctattgctataaattcagcggtcaatcaaggaagttgggaacc 14760120  T
Q  215 gatccaaatcataaatacggggcctcagatatctcacttactttttgcagatga 268  Q
    | | ||||||| |||||||||||| |||||||||||| |||| |||||||||||    
T  14760121 ggttcaaatcacaaatacggggccccagatatctcacctactatttgcagatga 14760174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 268
Target Start/End: Original strand, 26973452 - 26973705
Alignment:
Q  15 gacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 114  Q
    ||||| ||||| | |||||||||||| ||||| ||||| ||||| ||||| || ||||||||||| |||||||||||||  ||||| || || | ||| |    
T  26973452 gacataacaataaggctcatcatgcactgtgtttcttcatccaactactccatcttatggaatggaaacaaacttccttacttcaaacccacacgtggcc 26973551  T
Q  115 taagatagggtgatcctttatctccataccttttcattatttgcatggaaaagctatttgttgccattagtgccgccgtcaaccaaggaagataggatcc 214  Q
    |  |  | || ||||| || || |||||||| |||||| |||| ||||||||||| | | |||| || | | | || ||||| |||||||| | ||| ||    
T  26973552 ttcgccaaggagatccgttgtcaccatacctcttcattctttgtatggaaaagctctctattgctataaattcagctgtcaatcaaggaagttgggaacc 26973651  T
Q  215 gatccaaatcataaatacggggcctcagatatctcacttactttttgcagatga 268  Q
    | | ||||||| |||||||||||| || ||||||||| |||| ||||| |||||    
T  26973652 ggttcaaatcacaaatacggggccccaaatatctcacctactatttgccgatga 26973705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 23132732 - 23132579
Alignment:
Q  16 acatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtct 115  Q
    ||||||| |||||| ||||||||||||| ||| ||||  | | |||||||||  | ||||| ||||||||  | ||  ||||||||||| ||||||| ||    
T  23132732 acatcaccatcaagttcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 23132633  T
Q  116 aagatagggtgatcctttatctccataccttttcattatttgcatggaaaagct 169  Q
      || | |||||| | || || || || ||||||||  ||||||||||||||||    
T  23132632 ccgacaaggtgatacgttgtccccttatcttttcatcctttgcatggaaaagct 23132579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 271
Target Start/End: Complemental strand, 54477558 - 54477303
Alignment:
Q  15 gacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 114  Q
    |||||||| ||||||||||||||||||||||| || || || || |||| |||  | |||||||| ||||| ||||| |||||||||||||| |||||||    
T  54477558 gacatcaccatcaagctcatcatgcattgtgtttcatcatcaaaatactttatcctttggaatggaaacaagcttccatctttcaagcctacacatggtc 54477459  T
Q  115 taagatagggtgatcctttatctccataccttttcattatttgcatggaaaagctatttgttgccattagtgccgccgtcaaccaaggaagataggatcc 214  Q
    |  |  | ||||||||||| || || || || |||||| ||||||||||||| || | | |||| || | | | | |||||| ||||| |  | ||| ||    
T  54477458 tgcgccaaggtgatcctttgtccccttatctcttcattctttgcatggaaaatctctctattgctatcaattcagtcgtcaatcaagggaattgggaacc 54477359  T
Q  215 gatccaaatcataaatacggggcctcagatatctcacttactttttgcagatgatgt 271  Q
     |||||||||| ||||| |||||| || ||||||||| | || ||||||||||||||    
T  54477358 aatccaaatcacaaata-ggggccccaaatatctcacctcctctttgcagatgatgt 54477303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 33803974 - 33804122
Alignment:
Q  15 gacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 114  Q
    |||||||| ||||||||||||||||||||||| || || || |  ||||||||  | |||||||| |||||| | ||| ||||||||||| | ||  |||    
T  33803974 gacatcaccatcaagctcatcatgcattgtgtttcctcatctacatactctatactgtggaatggaaacaaaatgcctcctttcaagccttcacacagtc 33804073  T
Q  115 taagatagggtgatcctttatctccataccttttcattatttgcatgga 163  Q
    | ||| ||||||||||| |||| ||||| || || ||| |||| |||||    
T  33804074 tcagacagggtgatcctctatcaccatatctctttattctttgtatgga 33804122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 3881716 - 3881870
Alignment:
Q  17 catcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtcta 116  Q
    |||||| ||||| || ||||||||||||||  | |||||||  | |||||| ||||||||||| |||||| | ||   |||||| ||||| ||||| ||     
T  3881716 catcaccatcaaacttatcatgcattgtgtcacctcctccaccttctctatcttatggaatggtaacaaaatgccgcatttcaaacctacacatggcctc 3881815  T
Q  117 agatagggtgatcctttatctccataccttttcattatttgcatggaaaagctat 171  Q
     || | ||||||||  | ||||  ||||| |||||| |||| |||||||||||||    
T  3881816 cgacaaggtgatccgctttctctttacctcttcattctttgtatggaaaagctat 3881870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 46784547 - 46784475
Alignment:
Q  94 ctttcaagcctactcatggtctaagatagggtgatcctttatctccataccttttcattatttgcatggaaaa 166  Q
    ||||||| ||||||||||| || ||| | ||||||||| ||||||| ||||| |||||  |||||||| ||||    
T  46784547 ctttcaaacctactcatggccttagacaaggtgatcctctatctccctacctcttcatcctttgcatgaaaaa 46784475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 271
Target Start/End: Original strand, 40328174 - 40328430
Alignment:
Q  15 gacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 114  Q
    ||||| || ||||| |||||||||||||||||  | ||  | |  ||||| |||||||||||||| ||||| ||| || ||||||||||||||||||| |    
T  40328174 gacattaccatcaaactcatcatgcattgtgttacctcaccgagctactcaattttatggaatggaaacaagctttctcctttcaagcctactcatggac 40328273  T
Q  115 taagatagggtgatcctttatctccataccttttcattatttgcatggaaaagctatttgttgccattagtgccgccgtcaaccaaggaagataggatcc 214  Q
    |  |  | ||||| || || ||||| || ||||||||  | || |||||||| || | |||||| || | | |||| ||||||||||| |||| ||| ||    
T  40328274 ttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaaactctctgttgcaatcaattccgctgtcaaccaagggagatgggaacc 40328373  T
Q  215 gatccaaatcataaatacggggcctcagatatctcacttactttttgcagatgatgt 271  Q
    ||| ||||||| |||||||||| |  || |||||||| |||| ||||||||||||||    
T  40328374 gatacaaatcacaaatacgggggccaaggtatctcacctactctttgcagatgatgt 40328430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 271
Target Start/End: Complemental strand, 35135370 - 35135114
Alignment:
Q  15 gacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 114  Q
    ||||| || ||||| |||||||||||||||||  | ||  | |  ||||| |||||||||||||| ||||| ||  || ||||||||||||||||||| |    
T  35135370 gacattaccatcaaactcatcatgcattgtgttacctcaccaagctactcaattttatggaatggaaacaagctctctcctttcaagcctactcatggac 35135271  T
Q  115 taagatagggtgatcctttatctccataccttttcattatttgcatggaaaagctatttgttgccattagtgccgccgtcaaccaaggaagataggatcc 214  Q
    |  |  | ||||| || || ||||| || ||||||||  | || |||||||| || | |||||| || | | |||| ||||||||||| |||| ||| ||    
T  35135270 ttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaaactctctgttgcaatcaattccgctgtcaaccaagggagatgggaacc 35135171  T
Q  215 gatccaaatcataaatacggggcctcagatatctcacttactttttgcagatgatgt 271  Q
    ||| ||||||| |||||||||| |  || |||||||| |||| ||||||||||||||    
T  35135170 gatacaaatcacaaatacgggggccaaggtatctcacctactctttgcagatgatgt 35135114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 177501 - 177649
Alignment:
Q  21 acaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagat 120  Q
    |||||||| |||||||||||||||||  |||| || |  | |||| || | |||||||| ||||||   ||| || |||||||||||||||||||||||     
T  177501 acaatcaaactcatcatgcattgtgtcacttcttcaacattctctgttctttggaatggaaacaaatggcctcctatcaagcctactcatggtctaagac 177600  T
Q  121 agggtgatcctttatctccataccttttcattatttgcatggaaaagct 169  Q
    | ||||| ||||| ||||| ||||| ||||| || ||||||||||||||    
T  177601 aaggtgaccctttgtctccttacctattcatcatctgcatggaaaagct 177649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 39012526 - 39012626
Alignment:
Q  15 gacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 114  Q
    ||||| || ||||| ||||||||||||||||| || |||||||  | |||| |||| |||||||| || || ||||||  ||| ||||||||||||||||    
T  39012526 gacattaccatcaaactcatcatgcattgtgtctcatcctccaccttctctgttttgtggaatggcaataagcttcctaattttaagcctactcatggtc 39012625  T
Q  115 t 115  Q
    |    
T  39012626 t 39012626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 171
Target Start/End: Complemental strand, 14653827 - 14653672
Alignment:
Q  16 acatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtct 115  Q
    ||||||| |||||||||||||||||||| ||| ||||  | | |||||||||  | ||||||||||||||  | ||  ||||||||||| ||||||| ||    
T  14653827 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcct 14653728  T
Q  116 aagatagggtgatcctttatctccataccttttcattatttgcatggaaaagctat 171  Q
       | | |||||||| || || || ||  |||||||  ||||||||||||||||||    
T  14653727 ccaacaaggtgatccgttgtccccttattttttcatcctttgcatggaaaagctat 14653672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 271
Target Start/End: Complemental strand, 3779145 - 3778943
Alignment:
Q  69 ttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcctttatctccataccttttcattatttgcatggaaaagc 168  Q
    ||||||||||| ||||| ||  || ||||||||||||||||||| ||  |  | ||||| ||  | ||||| || ||||||||  | || |||||||| |    
T  3779145 ttatggaatggaaacaagctctctcctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcctctgtatggaaaaac 3779046  T
Q  169 tatttgttgccattagtgccgccgtcaaccaaggaagataggatccgatccaaatcataaatacggggcctcagatatctcacttactttttgcagatga 268  Q
    | | |||||| || | | |||| ||||| ||||| |||| ||| || || ||||||| |||||||||| |  || ||||||| ||||| |||||||||||    
T  3779045 tctctgttgcaatcaattccgctgtcaatcaagggagatgggaaccaatacaaatcacaaatacgggggccaaggtatctcatttactctttgcagatga 3778946  T
Q  269 tgt 271  Q
    |||    
T  3778945 tgt 3778943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 166
Target Start/End: Original strand, 16322463 - 16322596
Alignment:
Q  33 atcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagggtgatcctt 132  Q
    |||||||||||||| || ||  ||||||| ||| |  |||||||||| |||||  | ||| |||||||||| |||||||| ||  || | ||||| ||      
T  16322463 atcatgcattgtgtctcctcagccaattattctctcctatggaatggaaacaagatgcctcctttcaagcccactcatggccttcgacaaggtgacccgc 16322562  T
Q  133 tatctccataccttttcattatttgcatggaaaa 166  Q
    | ||||| |||||||||||  |||||||||||||    
T  16322563 tttctccgtaccttttcatactttgcatggaaaa 16322596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 26791326 - 26791471
Alignment:
Q  24 atcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctaagatagg 123  Q
    |||||||||||||||||||| ||  |||| ||||  | ||||||| | |||||||| || |   | ||| ||||| ||||||||||||| || ||  |||    
T  26791326 atcaagctcatcatgcattgcgttacttcatccagcttctctattctttggaatggaaataggttgcctcctttcgagcctactcatggcctcaggcagg 26791425  T
Q  124 gtgatcctttatctccataccttttcattatttgcatggaaaagct 169  Q
    |||||||  | || || |||||||| ||| |||||||||| |||||    
T  26791426 gtgatccgctttccccgtacctttttattctttgcatggagaagct 26791471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 24893990 - 24893836
Alignment:
Q  15 gacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 114  Q
    |||||||| |||||||||||||||||||||||  | |||||||  | ||| || ||||||||||| |||||| | ||  |||||||||| || |||||||    
T  24893990 gacatcaccatcaagctcatcatgcattgtgtcacctcctccacattctccatattatggaatggtaacaaaatgccccctttcaagcccacacatggtc 24893891  T
Q  115 taagatagggtgatcctttatctccataccttttcattatttgcatggaaaagct 169  Q
    | ||| | ||||| ||  | ||||| || ||||||||  | ||||||||||||||    
T  24893890 tcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagct 24893836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 24990817 - 24990663
Alignment:
Q  15 gacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 114  Q
    |||||||| ||||| ||||||||||| |||||  | ||||||| ||  |||||||||||||| || |||||| | ||  |||||||||| || |||||||    
T  24990817 gacatcaccatcaaactcatcatgcactgtgtcacctcctccactttttctattttatggaacggtaacaaaatgccccctttcaagcccacccatggtc 24990718  T
Q  115 taagatagggtgatcctttatctccataccttttcattatttgcatggaaaagct 169  Q
    | ||| | ||||| ||  | ||||| || ||||||||| |||||||||| |||||    
T  24990717 tcagacaaggtgacccgctctctccttatcttttcattctttgcatggagaagct 24990663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 27853106 - 27852952
Alignment:
Q  15 gacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 114  Q
    ||||| |||| |||| |||| |||||||||||  | ||||| | |  ||||||| | ||||| || |||||| | ||||||||||||||| |||||||||    
T  27853106 gacattacaaccaagttcattatgcattgtgttacctcctcaattctctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtc 27853007  T
Q  115 taagatagggtgatcctttatctccataccttttcattatttgcatggaaaagct 169  Q
    ||||| | || || ||||||||||| ||| | |||||  |||| |||||||||||    
T  27853006 taagacaaggggaccctttatctccttacttattcatcctttgtatggaaaagct 27852952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 50236717 - 50236580
Alignment:
Q  14 ggacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggt 113  Q
    ||||||||| | ||| ||||||||||||||||| || ||  |||  |||||||| |||||||| ||||||||  | ||  |||||||||||||||||||     
T  50236717 ggacatcaccaccaaactcatcatgcattgtgtctcctcacccacctactctatcttatggaacgggaacaagatgccccctttcaagcctactcatggc 50236618  T
Q  114 ctaagatagggtgatcctttatctccataccttttcat 151  Q
    || ||||| ||||||||  | || || |||||||||||    
T  50236617 ctcagataaggtgatccgctttccccttaccttttcat 50236580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 50451893 - 50452050
Alignment:
Q  14 ggacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggt 113  Q
    ||||||||| ||||| || ||||||||||||||  | ||||||| || |||||| ||||||||||| |||||| | ||   |||||| ||||| |||||     
T  50451893 ggacatcaccatcaaacttatcatgcattgtgtcacctcctccactttctctatcttatggaatggtaacaaaatgccgcatttcaaacctacacatggc 50451992  T
Q  114 ctaagatagggtgatcctttatctccataccttttcattatttgcatggaaaagctat 171  Q
    ||  || | ||||||||  | ||||| ||||| |||||| |||| ||||| |||||||    
T  50451993 ctccgacaaggtgatccgctttctccttacctcttcattctttgtatggagaagctat 50452050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 16770116 - 16770016
Alignment:
Q  15 gacatcacaatcaagctcatcatgcattgtgtatcttcctccaattactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 114  Q
    ||||| || ||||| || || ||||| ||||| ||||| |||| || |||||||||||||||||| |||||| | ||   |||||| |||||||||||||    
T  16770116 gacattaccatcaaacttattatgcactgtgtttcttcttccactttctctattttatggaatggtaacaaattgccgcatttcaaacctactcatggtc 16770017  T
Q  115 t 115  Q
    |    
T  16770016 t 16770016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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